View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11745_low_197 (Length: 240)
Name: NF11745_low_197
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11745_low_197 |
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Alignment Details
Target: chr4 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 36285757 - 36285668
Alignment:
| Q |
1 |
ctcggaatataatgatgaactttgataaattcaaattaccttgtacactggaccaaaaccaccctggccaagcatattttctgagtgata |
90 |
Q |
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| T |
36285757 |
ctcggaatataatgatgaactttgataaattcaaattaccttgtacactggaccaaaaccaccctggccaagcatattttctgagtgata |
36285668 |
T |
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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 191 - 223
Target Start/End: Complemental strand, 36285670 - 36285638
Alignment:
| Q |
191 |
ataacccttacccctatgccaaaatgtatgatg |
223 |
Q |
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| T |
36285670 |
ataacccttacccctatgccaaaatgtatgatg |
36285638 |
T |
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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 116
Target Start/End: Original strand, 16569606 - 16569701
Alignment:
| Q |
21 |
tttgataaattcaaattaccttgtacactggaccaaaaccaccctggccaagcatattttctgagtgatagttgtttgttgctgtggcaacctttc |
116 |
Q |
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| T |
16569606 |
tttgataaataaaaattactttgtaaactggactaaaacaatcctggccaagcttattttctcagtgaaagtgttttgttactttggcaagctttc |
16569701 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 71
Target Start/End: Original strand, 2746127 - 2746162
Alignment:
| Q |
36 |
ttaccttgtacactggaccaaaaccaccctggccaa |
71 |
Q |
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| T |
2746127 |
ttaccttgtacactgaaccaaaaccaccctggccaa |
2746162 |
T |
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