View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11745_low_199 (Length: 240)
Name: NF11745_low_199
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11745_low_199 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 7631427 - 7631204
Alignment:
| Q |
18 |
atacattatataagaactctggtttaacggtttttatcatagaactcaaaagcaaagtaatagaataacctatgatacatgtcaaagcacagcacttttc |
117 |
Q |
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| T |
7631427 |
atacattatataagaactatgatttaacggtttttatcatagaactcaaaagcaaagtaatagaataacctatgatacatgtcaaagcacaacacttttc |
7631328 |
T |
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| Q |
118 |
atttgttaattgtttgtggtcaaaacaatacaataattttgaagag-aaaacgagaagagaggatgtaagtacatagataggaattaaatgagtatgggc |
216 |
Q |
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| T |
7631327 |
atttgttaattgtttgtggtcaatacaatacaataattttgaagagaaaaacgagaagagaggatgtaagtacatagataggaataaaatgagtatgggc |
7631228 |
T |
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| Q |
217 |
ataaaattgaagaaaatatcaatt |
240 |
Q |
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|||||||||||||||||||||||| |
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| T |
7631227 |
ataaaattgaagaaaatatcaatt |
7631204 |
T |
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