View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11745_low_205 (Length: 239)
Name: NF11745_low_205
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11745_low_205 |
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Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 35939752 - 35939975
Alignment:
| Q |
1 |
tggtttgtattttaaaatannnnnnnctaaaatgagaaaagtggacatacactcaagcatttgccgcaagaatctctgcctgttggcccagctggtccac |
100 |
Q |
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| T |
35939752 |
tggtttgtattttaaaatatttttttctaaaatgagaaaagtggacatacagtcaagcatttgccgcaagaatctctgcctgttggcccagctggtccac |
35939851 |
T |
|
| Q |
101 |
aaaaggcagtccaaccatatttgctacgccatgacaagggttggttggcatcccaggtagcacagtatacactggcagtgttgtagtcccagttaatatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35939852 |
aaaaggcagtccaaccatatttgctacgccatgacaagggctggttggcatcccaggtagcacagtatacactggcagtgttgtagtcccagttaatatt |
35939951 |
T |
|
| Q |
201 |
ctgagggttgtaattattgtatgt |
224 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
35939952 |
ctgagggttgtaattattgtatgt |
35939975 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 27 - 213
Target Start/End: Original strand, 35953388 - 35953574
Alignment:
| Q |
27 |
ctaaaatgagaaaagtggacatacactcaagcatttgccgcaagaatctctgcc-tgttggcccagctggtccacaaaaggcagtccaaccatatttgct |
125 |
Q |
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|||||||||| ||||||| ||||| |||||||| ||||||||||| |||||||| || ||||| | |||||||||||||||||||| ||||| || |
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| T |
35953388 |
ctaaaatgagtaaagtggtcataccctcaagcacttgccgcaagagtctctgccatgagggccctgg-ggtccacaaaaggcagtccagccatacttttg |
35953486 |
T |
|
| Q |
126 |
acgccatgacaagggttggttggcatcccaggtagcacagtatacactggcagtgttgtagtcccagttaatattctgagggttgtaa |
213 |
Q |
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| T |
35953487 |
acgccatgacaagggctggttggcatcccatgtagcacagtaaacactggcagtgttgtagttccagttaatattctgagggttgtaa |
35953574 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 94 - 213
Target Start/End: Original strand, 35947917 - 35948036
Alignment:
| Q |
94 |
ggtccacaaaaggcagtccaaccatatttgctacgccatgacaagggttggttggcatcccaggtagcacagtatacactggcagtgttgtagtcccagt |
193 |
Q |
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|
|||||||||||||||||||||||||| || |||||||| |||||| ||||| ||||||||||||||||||||||||||||| ||||||| ||||| | |
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| T |
35947917 |
ggtccacaaaaggcagtccaaccatactttttacgccattccaagggctggtttgcatcccaggtagcacagtatacactggctctgttgtaatcccaat |
35948016 |
T |
|
| Q |
194 |
taatattctgagggttgtaa |
213 |
Q |
| |
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|||||||||||||||||||| |
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| T |
35948017 |
taatattctgagggttgtaa |
35948036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 94 - 155
Target Start/End: Original strand, 35929119 - 35929180
Alignment:
| Q |
94 |
ggtccacaaaaggcagtccaaccatatttgctacgccatgacaagggttggttggcatccca |
155 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||| |||| |||||||| |
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|
| T |
35929119 |
ggtccacagaaggcagtccaaccatatttgctacgccatgacaagggctggtctgcatccca |
35929180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 94 - 142
Target Start/End: Original strand, 31175100 - 31175148
Alignment:
| Q |
94 |
ggtccacaaaaggcagtccaaccatatttgctacgccatgacaagggtt |
142 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| ||||||||||| |||| |
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|
| T |
31175100 |
ggtccacaaaaggcagcccaaccatatttgcttcgccatgacaatggtt |
31175148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 97 - 137
Target Start/End: Original strand, 31206440 - 31206480
Alignment:
| Q |
97 |
ccacaaaaggcagtccaaccatatttgctacgccatgacaa |
137 |
Q |
| |
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||||||||||||| ||||||||||||||| ||||||||||| |
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| T |
31206440 |
ccacaaaaggcagcccaaccatatttgcttcgccatgacaa |
31206480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 97 - 134
Target Start/End: Complemental strand, 47583404 - 47583367
Alignment:
| Q |
97 |
ccacaaaaggcagtccaaccatatttgctacgccatga |
134 |
Q |
| |
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|||||||| |||||||||||||| |||||||||||||| |
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| T |
47583404 |
ccacaaaaagcagtccaaccatacttgctacgccatga |
47583367 |
T |
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