View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11745_low_207 (Length: 239)

Name: NF11745_low_207
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11745_low_207
NF11745_low_207
[»] chr8 (11 HSPs)
chr8 (2-153)||(21406375-21406529)
chr8 (2-153)||(21800867-21801021)
chr8 (2-150)||(44726602-44726753)
chr8 (2-153)||(38135426-38135580)
chr8 (2-153)||(44727323-44727478)
chr8 (5-71)||(38134472-38134538)
chr8 (16-71)||(21835098-21835153)
chr8 (2-45)||(4529159-4529202)
chr8 (2-45)||(23512664-23512707)
chr8 (2-45)||(30026158-30026201)
chr8 (2-45)||(36314227-36314270)
[»] chr6 (7 HSPs)
chr6 (2-153)||(32222634-32222788)
chr6 (1-153)||(9048191-9048346)
chr6 (2-153)||(9048904-9049059)
chr6 (2-149)||(35242014-35242165)
chr6 (2-153)||(32223333-32223488)
chr6 (2-45)||(3177652-3177695)
chr6 (18-50)||(35243083-35243115)
[»] chr7 (6 HSPs)
chr7 (2-153)||(40142475-40142629)
chr7 (1-153)||(42024904-42025059)
chr7 (3-153)||(7611574-7611726)
chr7 (2-153)||(42024392-42024545)
chr7 (1-71)||(40141519-40141589)
chr7 (9-45)||(34508702-34508738)
[»] chr1 (20 HSPs)
chr1 (2-153)||(46217134-46217288)
chr1 (3-153)||(46043612-46043765)
chr1 (2-153)||(51288969-51289123)
chr1 (1-144)||(48751233-48751379)
chr1 (2-152)||(29424487-29424640)
chr1 (2-144)||(51289785-51289930)
chr1 (2-150)||(29425154-29425306)
chr1 (2-153)||(46216499-46216654)
chr1 (2-151)||(45943546-45943698)
chr1 (2-153)||(3940056-3940210)
chr1 (2-125)||(48749866-48749992)
chr1 (2-73)||(46044649-46044720)
chr1 (2-71)||(3941049-3941118)
chr1 (149-219)||(1670322-1670392)
chr1 (149-219)||(6815382-6815452)
chr1 (2-45)||(7820737-7820780)
chr1 (113-150)||(48750508-48750545)
chr1 (47-90)||(26454000-26454043)
chr1 (2-45)||(51461778-51461821)
chr1 (3-45)||(7820234-7820276)
[»] chr3 (5 HSPs)
chr3 (2-150)||(54964739-54964890)
chr3 (1-153)||(33471567-33471722)
chr3 (2-45)||(36719323-36719366)
chr3 (2-45)||(19843299-19843342)
chr3 (2-45)||(51755407-51755450)
[»] chr4 (10 HSPs)
chr4 (2-153)||(17343226-17343380)
chr4 (5-153)||(19994103-19994254)
chr4 (2-150)||(9472960-9473111)
chr4 (2-141)||(9473490-9473632)
chr4 (1-71)||(17342241-17342311)
chr4 (2-71)||(19993154-19993224)
chr4 (149-219)||(53648815-53648885)
chr4 (1-45)||(46561877-46561921)
chr4 (2-45)||(55704663-55704706)
chr4 (2-50)||(36004221-36004269)
[»] chr2 (9 HSPs)
chr2 (2-153)||(43258550-43258704)
chr2 (2-153)||(43257823-43257978)
chr2 (2-87)||(42176127-42176212)
chr2 (2-71)||(42177113-42177182)
chr2 (87-153)||(42176242-42176308)
chr2 (2-45)||(16741313-16741356)
chr2 (2-45)||(28420049-28420092)
chr2 (2-45)||(29905588-29905631)
chr2 (2-45)||(39211490-39211533)
[»] chr5 (7 HSPs)
chr5 (1-144)||(1396367-1396513)
chr5 (2-153)||(17966706-17966860)
chr5 (2-153)||(1397198-1397352)
chr5 (2-153)||(25983466-25983619)
chr5 (2-101)||(17965950-17966052)
chr5 (6-71)||(25984134-25984199)
chr5 (108-153)||(25984075-25984120)
[»] scaffold0012 (2 HSPs)
scaffold0012 (2-101)||(232629-232731)
scaffold0012 (2-63)||(232741-232802)
[»] scaffold1500 (1 HSPs)
scaffold1500 (2-71)||(658-727)


Alignment Details
Target: chr8 (Bit Score: 129; Significance: 7e-67; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 2 - 153
Target Start/End: Original strand, 21406375 - 21406529
Alignment:
Q  2 tttttacaaaaaccttatattgtcattattaatatttattgattctaatactacttaattcattgtgattttacgaggaaacata---aacactctttta 98  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||   ||||||||||||    
T  21406375 tttttacaaaaaccttatattgtcattattaatatttattgattctaatactatttaattcattgtgattttatgaggaaacataatcaacactctttta 21406474  T
Q  99 atgctttggattacattaaagaattaaacaagaaagttatgattttctttttctt 153  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21406475 atgttttggattacattaaagaattaaacaagaaagttatgattttctttttctt 21406529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 2 - 153
Target Start/End: Original strand, 21800867 - 21801021
Alignment:
Q  2 tttttacaaaaaccttatattgtcattattaatatttattgattctaatactacttaattcattgtgattttacgaggaaacata---aacactctttta 98  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||   ||||||||||||    
T  21800867 tttttacaaaaaccttatattgtcattattaatatttattgattctaatactatttaattcattgtgattttatgaggaaacataatcaacactctttta 21800966  T
Q  99 atgctttggattacattaaagaattaaacaagaaagttatgattttctttttctt 153  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21800967 atgttttggattacattaaagaattaaacaagaaagttatgattttctttttctt 21801021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 2 - 150
Target Start/End: Original strand, 44726602 - 44726753
Alignment:
Q  2 tttttacaaaaaccttatattgtcattattaatatttattgattctaatactacttaattcattgtgattttacgaggaaacata---aacactctttta 98  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||   ||||||||||||    
T  44726602 tttttacaaaaaacttatattgtcattattaatatttattgattctaatactatttaattcattgtgattttatgaggaaacataatcaacactctttta 44726701  T
Q  99 atgctttggattacattaaagaattaaacaagaaagttatgattttcttttt 150  Q
    ||| ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  44726702 atgttttggattatattaaagaattaaacaagaaagttatgattttcttttt 44726753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 2 - 153
Target Start/End: Complemental strand, 38135580 - 38135426
Alignment:
Q  2 tttttacaaaaaccttatattgtcattattaatatttattgattctaatactacttaattcattgtgattttacgaggaaacataa---acactctttta 98  Q
    ||||||||||||| ||||||||||||||||||||||||| |||| |||||||| |||||| |||||||||||| ||||||||||||   |||||||||||    
T  38135580 tttttacaaaaactttatattgtcattattaatatttatcgattttaatactatttaattgattgtgattttatgaggaaacataatcaacactctttta 38135481  T
Q  99 atgctttggattacattaaagaattaaacaagaaagttatgattttctttttctt 153  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38135480 atgttttggattacattaaagaattaaacaagaaagttatgattttctttttctt 38135426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 2 - 153
Target Start/End: Complemental strand, 44727478 - 44727323
Alignment:
Q  2 tttttacaaaaaccttatattgtcattattaatatttatt-gattctaatactacttaattcattgtgattttacgaggaaacataa---acactctttt 97  Q
    |||| |||||||  ||||||||||||||| |||||||||| |||| |||||||| ||||||||||||||||||| ||||||||||||   ||||||||||    
T  44727478 ttttcacaaaaaaattatattgtcattatgaatatttatttgattataatactatttaattcattgtgattttatgaggaaacataatcaacactctttt 44727379  T
Q  98 aatgctttggattacattaaagaattaaacaagaaagttatgattttctttttctt 153  Q
    |||| |||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  44727378 aatgttttggattacattaaaaaattaaacaagaaagttatgattttctttttctt 44727323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 5 - 71
Target Start/End: Original strand, 38134472 - 38134538
Alignment:
Q  5 ttacaaaaaccttatattgtcattattaatatttattgattctaatactacttaattcattgtgatt 71  Q
    ||||||||||||||||||||| ||| ||||||||||||||||||||||||  |||||||||||||||    
T  38134472 ttacaaaaaccttatattgtcgttactaatatttattgattctaatactatgtaattcattgtgatt 38134538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 16 - 71
Target Start/End: Complemental strand, 21835153 - 21835098
Alignment:
Q  16 ttatattgtcattattaatatttattgattctaatactacttaattcattgtgatt 71  Q
    |||| ||||||||| ||||||||||||||||||||||||  |||||||||||||||    
T  21835153 ttattttgtcattactaatatttattgattctaatactatataattcattgtgatt 21835098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 4529202 - 4529159
Alignment:
Q  2 tttttacaaaaaccttatattgtcattattaatatttattgatt 45  Q
    |||||||||||||| || |||||||||| |||||||||||||||    
T  4529202 tttttacaaaaaccataaattgtcattaataatatttattgatt 4529159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 23512707 - 23512664
Alignment:
Q  2 tttttacaaaaaccttatattgtcattattaatatttattgatt 45  Q
    |||||||||||||| ||  |||||||||||||||||||||||||    
T  23512707 tttttacaaaaaccataatttgtcattattaatatttattgatt 23512664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 30026201 - 30026158
Alignment:
Q  2 tttttacaaaaaccttatattgtcattattaatatttattgatt 45  Q
    |||||||||||||| || |||||||||| |||||||||||||||    
T  30026201 tttttacaaaaaccataaattgtcattaataatatttattgatt 30026158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 36314270 - 36314227
Alignment:
Q  2 tttttacaaaaaccttatattgtcattattaatatttattgatt 45  Q
    |||| ||||||||| || ||||||||||||||||||||||||||    
T  36314270 ttttgacaaaaaccataaattgtcattattaatatttattgatt 36314227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 125; Significance: 2e-64; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 2 - 153
Target Start/End: Original strand, 32222634 - 32222788
Alignment:
Q  2 tttttacaaaaaccttatattgtcattattaatatttattgattctaatactacttaattcattgtgattttacgaggaaacata---aacactctttta 98  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||   ||||||||||||    
T  32222634 tttttacaaaaaacttatattgtcattattaatatttattgattctaatactatttaattcattgtgattttatgaggaaacataatcaacactctttta 32222733  T
Q  99 atgctttggattacattaaagaattaaacaagaaagttatgattttctttttctt 153  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32222734 atgttttggattacattaaagaattaaacaagaaagttatgattttctttttctt 32222788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 9048191 - 9048346
Alignment:
Q  1 atttttacaaaaaccttatattgtcattattaatatttattgattctaatactacttaattcattgtgattttacgaggaaacata---aacactctttt 97  Q
    ||||||||||||| |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||   |||||||||||    
T  9048191 atttttacaaaaaacttatattatcattattaatatttattgattctaatactatttaattcattgtgattttatgaggaaacataatcaacactctttt 9048290  T
Q  98 aatgctttggattacattaaagaattaaacaagaaagttatgattttctttttctt 153  Q
    |||  |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9048291 aatattttggattacattaaagaattaaacaagaaagttatgattttctttttctt 9048346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 2 - 153
Target Start/End: Complemental strand, 9049059 - 9048904
Alignment:
Q  2 tttttacaaaaaccttatattgtcattattaatatttatt-gattctaatactacttaattcattgtgattttacgaggaaacataa---acactctttt 97  Q
    |||| |||||||  |||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||||||||||||   ||||||||||    
T  9049059 ttttcacaaaaaaattatattgtcattattaatatttatttgattctaatactatttaattcattgtgattttatgaggaaacataatcaacactctttt 9048960  T
Q  98 aatgctttggattacattaaagaattaaacaagaaagttatgattttctttttctt 153  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9048959 aatgttttggattacattaaagaattaaacaagaaagttatgattttctttttctt 9048904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 2 - 149
Target Start/End: Original strand, 35242014 - 35242165
Alignment:
Q  2 tttttacaaaaaccttatattgtcattattaatatttattgattctaatactacttaattcattgtgattttacgaggaaacata---aacactctttta 98  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||   ||||||||||||    
T  35242014 tttttacaaaaaccatatattgtcattattaatatttattgattctaatactatttaactcattgtgattttacgaagaaacataatcaacactctttta 35242113  T
Q  99 atgctttggattacatt-aaagaattaaacaagaaagttatgattttctttt 149  Q
    ||| ||||||||||||| ||| ||||||||||||||||||||||||| ||||    
T  35242114 atgttttggattacattaaaaaaattaaacaagaaagttatgattttttttt 35242165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 2 - 153
Target Start/End: Complemental strand, 32223488 - 32223333
Alignment:
Q  2 tttttacaaaaaccttatattgtcattattaatatttatt-gattctaatactacttaattcattgtgattttacgaggaaacataa---acactctttt 97  Q
    |||| |||||||  ||||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||||| ||||||||||||   ||||||||||    
T  32223488 ttttcacaaaaaaattatattgtcattattattatttatttgattctaatactatttaattcattgtgattttatgaggaaacataatcaacactctttt 32223389  T
Q  98 aatgctttggattacattaaagaattaaacaagaaagttatgattttctttttctt 153  Q
    |||  |||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  32223388 aatattttggattacattaaagaattaaacaagaaagctatgattttctttttctt 32223333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 45
Target Start/End: Original strand, 3177652 - 3177695
Alignment:
Q  2 tttttacaaaaaccttatattgtcattattaatatttattgatt 45  Q
    |||| |||||||||  ||||||||||||||||||||||||||||    
T  3177652 ttttgacaaaaaccagatattgtcattattaatatttattgatt 3177695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 35243115 - 35243083
Alignment:
Q  18 atattgtcattattaatatttattgattctaat 50  Q
    |||||||||||| ||||||||||||||||||||    
T  35243115 atattgtcattactaatatttattgattctaat 35243083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 121; Significance: 4e-62; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 2 - 153
Target Start/End: Complemental strand, 40142629 - 40142475
Alignment:
Q  2 tttttacaaaaaccttatattgtcattattaatatttattgattctaatactacttaattcattgtgattttacgaggaaacata---aacactctttta 98  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||   ||||||||||||    
T  40142629 tttttacaaaaaccttatattatcattattaatatttattgattctaatactatttaattcattgtgattttatgaggaaacataatcaacactctttta 40142530  T
Q  99 atgctttggattacattaaagaattaaacaagaaagttatgattttctttttctt 153  Q
    ||| ||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  40142529 atgttttggattacattaaagaattaaacaagaaacttatgattttctttttctt 40142475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 42025059 - 42024904
Alignment:
Q  1 atttttacaaaaaccttatattgtcattattaatatttattgattctaatactacttaattcattgtgattttacgaggaaacataa---acactctttt 97  Q
    |||||||||||||||||| ||| |||||||||||||||||||||| |||||||| |||||||||||| ||| || ||| ||||||||   ||||||||||    
T  42025059 atttttacaaaaaccttaaattatcattattaatatttattgattttaatactatttaattcattgtaattctatgagtaaacataatcaacactctttt 42024960  T
Q  98 aatgctttggattacattaaagaattaaacaagaaagttatgattttctttttctt 153  Q
    |||| |||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  42024959 aatgttttggattacattaaagaattaaacaagaaaaatatgattttctttttctt 42024904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 3 - 153
Target Start/End: Complemental strand, 7611726 - 7611574
Alignment:
Q  3 ttttacaaaaaccttatattgtcattattaatatttattgattctaatactac---ttaattcattgtgattttacgaggaaacata---aacactcttt 96  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||| | | |||||||   ||||||||||    
T  7611726 ttttacaaaaactttatattgtcattattaatatttattgattctaatactactatttaattcattgtgattttatgggaaaacataatcaacactcttt 7611627  T
Q  97 taatgctttggattacattaaagaattaaacaagaaagttatgattttctttttctt 153  Q
    ||||| |||||||||||||||||||||    |||||||||||||||||| |||||||    
T  7611626 taatgttttggattacattaaagaatt----aagaaagttatgattttcattttctt 7611574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 2 - 153
Target Start/End: Original strand, 42024392 - 42024545
Alignment:
Q  2 tttttacaaaaaccttatattgtcattattaatatttattgattctaatactacttaattcattgtgattttacgaggaaacataaacac--tcttttaa 99  Q
    |||||||||||| |||| |||||||||||||||||||||||||| |||||||| |||||| |||||| || || ||| ||| |||| ||   | ||||||    
T  42024392 tttttacaaaaatcttaaattgtcattattaatatttattgattttaatactatttaatttattgtggttctatgagaaaatataatcaacatattttaa 42024491  T
Q  100 tgctttggattacattaaagaattaaacaagaaagttatgattttctttttctt 153  Q
    || | |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  42024492 tgttgtggattacattaaagaattaaataagaaagttatgattttctttttctt 42024545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 40141519 - 40141589
Alignment:
Q  1 atttttacaaaaaccttatattgtcattattaatatttattgattctaatactacttaattcattgtgatt 71  Q
    |||||||||||||| ||||||| |||||||||||||||||| ||||||||| || ||||||||||||||||    
T  40141519 atttttacaaaaactttatattatcattattaatatttattaattctaatattatttaattcattgtgatt 40141589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 45
Target Start/End: Original strand, 34508702 - 34508738
Alignment:
Q  9 aaaaaccttatattgtcattattaatatttattgatt 45  Q
    ||||||| ||||||||||||| |||||||||||||||    
T  34508702 aaaaaccatatattgtcattaataatatttattgatt 34508738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 121; Significance: 4e-62; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 2 - 153
Target Start/End: Complemental strand, 46217288 - 46217134
Alignment:
Q  2 tttttacaaaaaccttatattgtcattattaatatttattgattctaatactacttaattcattgtgattttacgaggaaacata---aacactctttta 98  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||   ||||||||||||    
T  46217288 tttttacaaaaaacttatattgtcattattaatatttattgattctaatactatttaattcattgtgattttatgaggaaacataatcaacactctttta 46217189  T
Q  99 atgctttggattacattaaagaattaaacaagaaagttatgattttctttttctt 153  Q
    ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  46217188 atgttttgaattacattaaagaattaaacaagaaagttatgattttctttttctt 46217134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 3 - 153
Target Start/End: Original strand, 46043612 - 46043765
Alignment:
Q  3 ttttacaaaaaccttatattgtcattattaatatttattgattctaatactacttaattcattgtgattttacgaggaaacata---aacactcttttaa 99  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |||||||||||   |||||||||||||    
T  46043612 ttttaaaaaaaccttatattgtcattattaatatttattgattctaatattatttaattcattgtgattttatgaggaaacataatcaacactcttttaa 46043711  T
Q  100 tgctttggattacattaaagaattaaacaagaaagttatgattttctttttctt 153  Q
    || |||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  46043712 tgttttggattacattaaagaattaaacaagaaagttataattttctttttctt 46043765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 2 - 153
Target Start/End: Original strand, 51288969 - 51289123
Alignment:
Q  2 tttttacaaaaaccttatattgtcattattaatatttattgattctaatactacttaattcattgtgattttacgaggaaacata---aacactctttta 98  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||  ||||||||||   ||||||||||||    
T  51288969 tttttacaaaaatcttatattgtcattattaatatttattgattctaatactaattaattcattgtgattttataaggaaacataatcaacactctttta 51289068  T
Q  99 atgctttggattacattaaagaattaaacaagaaagttatgattttctttttctt 153  Q
    ||  ||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  51289069 atattttggattacattaaagaattaaacaagaaaattatgattttctttttctt 51289123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 48751379 - 48751233
Alignment:
Q  1 atttttacaaaaaccttatattgtcattattaatatttattgattctaatactacttaattcattgtgattttacgaggaaacata---aacactctttt 97  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||   |||||||||||    
T  48751379 atttttacaaaaaccttatattatcattattaatatttattgattctaatactatttaattcattgtgattttaagaggaaacataatcaacactctttt 48751280  T
Q  98 aatgctttggattacattaaagaattaaacaagaaagttatgatttt 144  Q
    |||  ||| ||||||||||||||||||||||||||||||||||||||    
T  48751279 aatattttagattacattaaagaattaaacaagaaagttatgatttt 48751233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 2 - 152
Target Start/End: Original strand, 29424487 - 29424640
Alignment:
Q  2 tttttacaaaaaccttatattgtcattattaatatttattgattctaatactacttaattcattgtgattttacgaggaaacata---aacactctttta 98  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |||||||||||   ||||||||||||    
T  29424487 tttttacaaaaaacttatattgtcattattaatatttattgattctaatattatttaattcattgtgattttatgaggaaacataatcaacactctttta 29424586  T
Q  99 atgctttggattacattaaagaattaaacaagaaagttatgattttctttttct 152  Q
    ||  |||||||| |||||||||||||| ||||||||||||||||||||||||||    
T  29424587 atattttggattgcattaaagaattaaccaagaaagttatgattttctttttct 29424640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 2 - 144
Target Start/End: Complemental strand, 51289930 - 51289785
Alignment:
Q  2 tttttacaaaaaccttatattgtcattattaatatttattgattctaatactacttaattcattgtgattttacgaggaaacata---aacactctttta 98  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |||||||||||| ||| |||||||   ||||||||||||    
T  51289930 tttttacaaaaaccttatattgtcactattaatatttattgattctaatactatttaatttattgtgattttatgagaaaacataatcaacactctttta 51289831  T
Q  99 atgctttggattacattaaagaattaaacaagaaagttatgatttt 144  Q
    ||| |||||||||||||||||||||||| |||||||||||||||||    
T  51289830 atgttttggattacattaaagaattaaataagaaagttatgatttt 51289785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 2 - 150
Target Start/End: Complemental strand, 29425306 - 29425154
Alignment:
Q  2 tttttacaaaaaccttatattgtcattattaatatttatt-gattctaatactacttaattcattgtgattttacgaggaaacataa---acactctttt 97  Q
    |||| |||||||  |||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||||||||||||   ||||||||||    
T  29425306 ttttcacaaaaaaattatattgtcattattaatatttatttgattctaatactatttaattcattgtgattttatgaggaaacataatcaacactctttt 29425207  T
Q  98 aatgctttggattacattaaagaattaaacaagaaagttatgattttcttttt 150  Q
    |||| ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  29425206 aatgttttggattatattaaagaattaaacaagaaagttatgattttcttttt 29425154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 2 - 153
Target Start/End: Original strand, 46216499 - 46216654
Alignment:
Q  2 tttttacaaaaaccttatattgtcattattaatatttatt-gattctaatactacttaattcattgtgattttacgaggaaacataa---acactctttt 97  Q
    |||| |||||||  ||||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||||| ||||||||||||   ||||||||||    
T  46216499 ttttcacaaaaaaattatattgtcattattaatgtttatttgattctaatactatttaattcattgtgattttatgaggaaacataatcaacactctttt 46216598  T
Q  98 aatgctttggattacattaaagaattaaacaagaaagttatgattttctttttctt 153  Q
    |||| |||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  46216599 aatgttttggattacattaaaaaattaaacaagaaagttatgattttctttttctt 46216654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 2 - 151
Target Start/End: Complemental strand, 45943698 - 45943546
Alignment:
Q  2 tttttacaaaaaccttatattgtcattattaatatttattgattctaatactacttaattcattgtgattttacgaggaaacata---aacactctttta 98  Q
    ||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||||||   |||  |||||||    
T  45943698 tttttacaaaaaccttaaattgtcattattaatatttattgattttaatactatttaattcattgtgattctacgaggaaacataatcaacggtctttta 45943599  T
Q  99 atgctttggattacattaaagaattaaacaagaaagttatgattttctttttc 151  Q
    |||  |||||||||||||||||||||||||| ||| |||||||||||||||||    
T  45943598 atgtcttggattacattaaagaattaaacaaaaaaattatgattttctttttc 45943546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 2 - 153
Target Start/End: Original strand, 3940056 - 3940210
Alignment:
Q  2 tttttacaaaaaccttatattgtcattattaatatttattgattctaatactacttaattcatt-gtgattttacgaggaaacataa---acactctttt 97  Q
    |||||||||||| |||||||||||||||||||||||||||| || |||||||| |||||||||| ||||||||| ||||||||||||   ||||||||||    
T  3940056 tttttacaaaaatcttatattgtcattattaatatttattgttt-taatactatttaattcatttgtgattttatgaggaaacataatcaacactctttt 3940154  T
Q  98 aatgctttggattacattaaagaattaaacaagaaagttatgattttctttttctt 153  Q
    |||| |||| ||||||||||||||||||| ||||||| ||||||||||||||||||    
T  3940155 aatgttttgaattacattaaagaattaaataagaaagctatgattttctttttctt 3940210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 2 - 125
Target Start/End: Original strand, 48749866 - 48749992
Alignment:
Q  2 tttttacaaaaaccttatattgtcattattaatatttattgattctaatactacttaattcattgtgattttacgaggaaacata---aacactctttta 98  Q
    ||||||||||||| |||| ||||||||||||||||||||||||||||||| || ||||||||||||||||||| |||||||||||   ||||||||||||    
T  48749866 tttttacaaaaactttattttgtcattattaatatttattgattctaatattatttaattcattgtgattttatgaggaaacataatcaacactctttta 48749965  T
Q  99 atgctttggattacattaaagaattaa 125  Q
    ||  |||||||||||||||||||||||    
T  48749966 atattttggattacattaaagaattaa 48749992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 2 - 73
Target Start/End: Complemental strand, 46044720 - 46044649
Alignment:
Q  2 tttttacaaaaaccttatattgtcattattaatatttattgattctaatactacttaattcattgtgatttt 73  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||    
T  46044720 tttttacaaaaaccttatattgtcattactaatatttattgattctaatactaattaattcattgtgatttt 46044649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 2 - 71
Target Start/End: Complemental strand, 3941118 - 3941049
Alignment:
Q  2 tttttacaaaaaccttatattgtcattattaatatttattgattctaatactacttaattcattgtgatt 71  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |||||||||    
T  3941118 tttttacaaaaaccttatattgtcattattaatatttattgattctaatacaatttaattaattgtgatt 3941049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 149 - 219
Target Start/End: Original strand, 1670322 - 1670392
Alignment:
Q  149 ttcttagtatacaccaacaacacccaatactttttattttactgtcacttttcatattctctttcctcttc 219  Q
    |||||| ||||||||||||||||||||||||||||||||||| |||| ||||| |||||||||||||||||    
T  1670322 ttcttattatacaccaacaacacccaatactttttattttaccgtcatttttcctattctctttcctcttc 1670392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 149 - 219
Target Start/End: Original strand, 6815382 - 6815452
Alignment:
Q  149 ttcttagtatacaccaacaacacccaatactttttattttactgtcacttttcatattctctttcctcttc 219  Q
    |||||| |||||||||| ||| ||||||||||||||||||||||||||||||| |||||||||||||||||    
T  6815382 ttcttattatacaccaataactcccaatactttttattttactgtcacttttcctattctctttcctcttc 6815452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 7820780 - 7820737
Alignment:
Q  2 tttttacaaaaaccttatattgtcattattaatatttattgatt 45  Q
    |||||||||||||| || ||||||||||||||||||||||||||    
T  7820780 tttttacaaaaaccataaattgtcattattaatatttattgatt 7820737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 150
Target Start/End: Original strand, 48750508 - 48750545
Alignment:
Q  113 attaaagaattaaacaagaaagttatgattttcttttt 150  Q
    |||||||||||||||||||||||||||||||| |||||    
T  48750508 attaaagaattaaacaagaaagttatgatttttttttt 48750545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 47 - 90
Target Start/End: Original strand, 26454000 - 26454043
Alignment:
Q  47 taatactacttaattcattgtgattttacgaggaaacataaaca 90  Q
    |||||||| ||||||||||||||||||| ||| |||||||||||    
T  26454000 taatactatttaattcattgtgattttatgagaaaacataaaca 26454043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 51461821 - 51461778
Alignment:
Q  2 tttttacaaaaaccttatattgtcattattaatatttattgatt 45  Q
    |||||||||||||| || |||||||||| |||||||||||||||    
T  51461821 tttttacaaaaaccataaattgtcattaataatatttattgatt 51461778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 45
Target Start/End: Original strand, 7820234 - 7820276
Alignment:
Q  3 ttttacaaaaaccttatattgtcattattaatatttattgatt 45  Q
    ||||||||||||| || ||| ||||||||||||||||||||||    
T  7820234 ttttacaaaaaccataaattatcattattaatatttattgatt 7820276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 118; Significance: 2e-60; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 2 - 150
Target Start/End: Complemental strand, 54964890 - 54964739
Alignment:
Q  2 tttttacaaaaaccttatattgtcattattaatatttattgattctaatactacttaattcattgtgattttacgaggaaacata---aacactctttta 98  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||   ||||||||||||    
T  54964890 tttttacaaaaaccttatattgtcattattaatatttattgattctaatactatttaattcattgtgattttatgaggaaacataatcaacactctttta 54964791  T
Q  99 atgctttggattacattaaagaattaaacaagaaagttatgattttcttttt 150  Q
    ||  ||||||||||||||||||||||||||||||||||||| ||||||||||    
T  54964790 atattttggattacattaaagaattaaacaagaaagttatgcttttcttttt 54964739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 33471567 - 33471722
Alignment:
Q  1 atttttacaaaaaccttatattgtcattattaatatttattgattctaatactacttaattcattgtgattttacgaggaaacata---aacactctttt 97  Q
    |||||||||||||||||| ||| |||||||||||||||||||||| ||||| || |||||||||||||||| || |||||||||||   |||||||||||    
T  33471567 atttttacaaaaaccttaaattatcattattaatatttattgattttaatattatttaattcattgtgattctatgaggaaacataatcaacactctttt 33471666  T
Q  98 aatgctttggattacattaaagaattaaacaagaaagttatgattttctttttctt 153  Q
    ||||  |||||||| ||||||||||||| |||||||||||||||||||||||||||    
T  33471667 aatgtcttggattatattaaagaattaagcaagaaagttatgattttctttttctt 33471722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 45
Target Start/End: Original strand, 36719323 - 36719366
Alignment:
Q  2 tttttacaaaaaccttatattgtcattattaatatttattgatt 45  Q
    |||| |||||||||||| ||||||||||||||||||||||||||    
T  36719323 ttttgacaaaaaccttaaattgtcattattaatatttattgatt 36719366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 19843342 - 19843299
Alignment:
Q  2 tttttacaaaaaccttatattgtcattattaatatttattgatt 45  Q
    |||||||||||||| || |||||||||| |||||||||||||||    
T  19843342 tttttacaaaaaccataaattgtcattaataatatttattgatt 19843299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 51755450 - 51755407
Alignment:
Q  2 tttttacaaaaaccttatattgtcattattaatatttattgatt 45  Q
    |||||||||||||| || |||||||||| |||||||||||||||    
T  51755450 tttttacaaaaaccataaattgtcattaataatatttattgatt 51755407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 117; Significance: 1e-59; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 2 - 153
Target Start/End: Complemental strand, 17343380 - 17343226
Alignment:
Q  2 tttttacaaaaaccttatattgtcattattaatatttattgattctaatactacttaattcattgtgattttacgaggaaacata---aacactctttta 98  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||  || |||||||   ||||||||||||    
T  17343380 tttttacaaaaaccttatattgtcattattaatatttattgattctaatactatttaattcattgtgattttattagaaaacataatcaacactctttta 17343281  T
Q  99 atgctttggattacattaaagaattaaacaagaaagttatgattttctttttctt 153  Q
    ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  17343280 atgttttggattacattaaagaattaaacaagaaagttatgaatttctttttctt 17343226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 5 - 153
Target Start/End: Complemental strand, 19994254 - 19994103
Alignment:
Q  5 ttacaaaaaccttatattgtcattattaatatttattgattctaatactacttaattcattgtgattttacgaggaaacata---aacactcttttaatg 101  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||   |||||||||||||||    
T  19994254 ttacagaaaccttatattgtcattattaatatttattgattctaatactatttaattcattgtgattttatgaggaaacataatcaacactcttttaatg 19994155  T
Q  102 ctttggattacattaaagaattaaacaagaaagttatgattttctttttctt 153  Q
     |||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  19994154 ttttggattacatcaaagaattaaacaagaaggttatgattttctttttctt 19994103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 2 - 150
Target Start/End: Original strand, 9472960 - 9473111
Alignment:
Q  2 tttttacaaaaaccttatattgtcattattaatatttattgattctaatactacttaattcattgtgattttacgaggaaacata---aacactctttta 98  Q
    ||||||||||| ||||| ||||||||||||||||||| |||||| |||||||| ||||||||||||||||||| |||||||||||   ||||||||||||    
T  9472960 tttttacaaaatccttaaattgtcattattaatatttgttgattttaatactatttaattcattgtgattttatgaggaaacataatcaacactctttta 9473059  T
Q  99 atgctttggattacattaaagaattaaacaagaaagttatgattttcttttt 150  Q
    ||   |||||||||||||||||||||||||||||||||||||||||||||||    
T  9473060 atatcttggattacattaaagaattaaacaagaaagttatgattttcttttt 9473111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 2 - 141
Target Start/End: Complemental strand, 9473632 - 9473490
Alignment:
Q  2 tttttacaaaaaccttatattgtcattattaatatttattgattctaatactacttaattcattgtgattttacgaggaaacata---aacactctttta 98  Q
    ||||||||||||||||| |||||||||||||||||||||| ||| |||||||| |||||||||||||||| || |||||||||||   |||||| ||| |    
T  9473632 tttttacaaaaaccttaaattgtcattattaatatttattaattttaatactatttaattcattgtgattctatgaggaaacataatcaacactatttaa 9473533  T
Q  99 atgctttggattacattaaagaattaaacaagaaagttatgat 141  Q
    |||  |||||||||||||||||||||||||||||| |||||||    
T  9473532 atgtcttggattacattaaagaattaaacaagaaaattatgat 9473490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 17342241 - 17342311
Alignment:
Q  1 atttttacaaaaaccttatattgtcattattaatatttattgattctaatactacttaattcattgtgatt 71  Q
    ||||||||||||| ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||    
T  17342241 atttttacaaaaatcttatattgtcattattaatatttattgattttaatactatttaattcattgtgatt 17342311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 2 - 71
Target Start/End: Original strand, 19993154 - 19993224
Alignment:
Q  2 tttttacaaaaaccttatattgtcattatt-aatatttattgattctaatactacttaattcattgtgatt 71  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  19993154 tttttacaaaaaccttatattgtcattatttaatatttattgattctaatactatttaattcattgtgatt 19993224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 149 - 219
Target Start/End: Complemental strand, 53648885 - 53648815
Alignment:
Q  149 ttcttagtatacaccaacaacacccaatactttttattttactgtcacttttcatattctctttcctcttc 219  Q
    |||||| |||||||||| |||| ||||||||||||||||||| |||||||||  |||| ||||||||||||    
T  53648885 ttcttattatacaccaataacatccaatactttttattttaccgtcactttttctattgtctttcctcttc 53648815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 46561921 - 46561877
Alignment:
Q  1 atttttacaaaaaccttatattgtcattattaatatttattgatt 45  Q
    ||||||||||||||| || ||||||||||||||||||||||||||    
T  46561921 atttttacaaaaaccataaattgtcattattaatatttattgatt 46561877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 55704706 - 55704663
Alignment:
Q  2 tttttacaaaaaccttatattgtcattattaatatttattgatt 45  Q
    |||||||||||| | || ||||||||||||||||||||||||||    
T  55704706 tttttacaaaaatcataaattgtcattattaatatttattgatt 55704663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 50
Target Start/End: Complemental strand, 36004269 - 36004221
Alignment:
Q  2 tttttacaaaaaccttatattgtcattattaatatttattgattctaat 50  Q
    ||||| ||||||| ||| ||| |||||||||||||||||||||| ||||    
T  36004269 tttttgcaaaaactttaaattttcattattaatatttattgattttaat 36004221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 117; Significance: 1e-59; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 2 - 153
Target Start/End: Complemental strand, 43258704 - 43258550
Alignment:
Q  2 tttttacaaaaaccttatattgtcattattaatatttattgattctaatactacttaattcattgtgattttacgaggaaacata---aacactctttta 98  Q
    ||||||| |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||   |||| |||||||    
T  43258704 tttttacgaaaaacttatattgtcattattaatatttattgattctaatactatttaattcattgtgattttatgaggaaacataatcaacattctttta 43258605  T
Q  99 atgctttggattacattaaagaattaaacaagaaagttatgattttctttttctt 153  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43258604 atgttttggattacattaaagaattaaacaagaaagttatgattttctttttctt 43258550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 2 - 153
Target Start/End: Original strand, 43257823 - 43257978
Alignment:
Q  2 tttttacaaaaaccttatattgtcattattaatatttatt-gattctaatactacttaattcattgtgattttacgaggaaacataaaca---ctctttt 97  Q
    |||| |||||||  |||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| || ||||||||| ||   |||||||    
T  43257823 ttttcacaaaaaaattatattgtcattattaatatttatttgattctaatactatttaattcattgtgattttatgatgaaacataatcaatactctttt 43257922  T
Q  98 aatgctttggattacattaaagaattaaacaagaaagttatgattttctttttctt 153  Q
    |||| ||||||||| |||||| ||||||| ||||||||||||||||||||||||||    
T  43257923 aatgttttggattatattaaaaaattaaataagaaagttatgattttctttttctt 43257978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 2 - 87
Target Start/End: Original strand, 42176127 - 42176212
Alignment:
Q  2 tttttacaaaaaccttatattgtcattattaatatttattgattctaatactacttaattcattgtgattttacgaggaaacataa 87  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||  |||||||||||    
T  42176127 tttttacaaaaaccttatattgttattattaatatttattgattctaatactatttaattcattgtgattttataaggaaacataa 42176212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 2 - 71
Target Start/End: Complemental strand, 42177182 - 42177113
Alignment:
Q  2 tttttacaaaaaccttatattgtcattattaatatttattgattctaatactacttaattcattgtgatt 71  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||    
T  42177182 tttttacaaaaaccttatattgtcattactaatatttattgattctaatactatttaattcattgtgatt 42177113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 87 - 153
Target Start/End: Original strand, 42176242 - 42176308
Alignment:
Q  87 aacactcttttaatgctttggattacattaaagaattaaacaagaaagttatgattttctttttctt 153  Q
    ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  42176242 aacactcttttaatgttttggattacattaaagaattagacaagaaagttatgattttctttttctt 42176308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 45
Target Start/End: Original strand, 16741313 - 16741356
Alignment:
Q  2 tttttacaaaaaccttatattgtcattattaatatttattgatt 45  Q
    |||| ||||||||| || ||||||||||||||||||||||||||    
T  16741313 ttttgacaaaaaccataaattgtcattattaatatttattgatt 16741356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 28420092 - 28420049
Alignment:
Q  2 tttttacaaaaaccttatattgtcattattaatatttattgatt 45  Q
    |||||||||||||| || |||||||||| |||||||||||||||    
T  28420092 tttttacaaaaaccataaattgtcattaataatatttattgatt 28420049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 45
Target Start/End: Original strand, 29905588 - 29905631
Alignment:
Q  2 tttttacaaaaaccttatattgtcattattaatatttattgatt 45  Q
    |||||||||||||| || |||||||||| |||||||||||||||    
T  29905588 tttttacaaaaaccataaattgtcattaataatatttattgatt 29905631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 39211533 - 39211490
Alignment:
Q  2 tttttacaaaaaccttatattgtcattattaatatttattgatt 45  Q
    |||||||||||||| || |||||||||| |||||||||||||||    
T  39211533 tttttacaaaaaccataaattgtcattaataatatttattgatt 39211490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 109; Significance: 6e-55; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 1396367 - 1396513
Alignment:
Q  1 atttttacaaaaaccttatattgtcattattaatatttattgattctaatactacttaattcattgtgattttacgaggaaacata---aacactctttt 97  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| ||||||| |||   |||||||||||    
T  1396367 atttttacaaaaatcttatattgtcattattaatatttattgattctaatactatttaattcattgtaattttatgaggaaatataatcaacactctttt 1396466  T
Q  98 aatgctttggattacattaaagaattaaacaagaaagttatgatttt 144  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||    
T  1396467 aatgttttggattacattaaagaattaaacaagaaagttatgatttt 1396513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 2 - 153
Target Start/End: Complemental strand, 17966860 - 17966706
Alignment:
Q  2 tttttacaaaaaccttatattgtcattattaatatttattgattctaatactacttaattcattgtgattttacgaggaaacataa---acactctttta 98  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||  |||||||||||   ||| |||||||    
T  17966860 tttttacaaaaatcttatattgtcattattaatatttattgattctaatactatttaattcattgtgattttataaggaaacataatcgacattctttta 17966761  T
Q  99 atgctttggattacattaaagaattaaacaagaaagttatgattttctttttctt 153  Q
    ||  |||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  17966760 atattttggattacattaaagaattaaacaagaaagttatgattttatttttctt 17966706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 2 - 153
Target Start/End: Complemental strand, 1397352 - 1397198
Alignment:
Q  2 tttttacaaaaaccttatattgtcattattaatatttattgattctaatactacttaattcattgtgattttacgaggaaacata---aacactctttta 98  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||  ||||||||||   ||||||||||||    
T  1397352 tttttacaaaaatcttatattgtcattattaatatttattgattctaataatatttaattcattgtgattttataaggaaacataatcaacactctttta 1397253  T
Q  99 atgctttggattacattaaagaattaaacaagaaagttatgattttctttttctt 153  Q
    ||  | ||||||||||||||||||||||||||||||||||||||||| |||||||    
T  1397252 atattctggattacattaaagaattaaacaagaaagttatgattttcattttctt 1397198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 2 - 153
Target Start/End: Original strand, 25983466 - 25983619
Alignment:
Q  2 tttttacaaaaaccttatattgtcattattaatatttattgattctaatactacttaattcattgtgattttacgaggaaacata---aacactctttta 98  Q
    ||||||||||||||||| |||||||||||||||| ||||||||| |||||||| |||||||||||||||| || ||||||| |||   ||||||||||||    
T  25983466 tttttacaaaaaccttaaattgtcattattaataattattgattttaatactatttaattcattgtgattctatgaggaaaaataatcaacactctttta 25983565  T
Q  99 atgctttggattacattaaagaattaaacaagaaagttatgattttctttttctt 153  Q
    |||  ||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  25983566 atgtcttggattacattaaa-aattaaacaagaaagttatgattttctttttctt 25983619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 2 - 101
Target Start/End: Original strand, 17965950 - 17966052
Alignment:
Q  2 tttttacaaaaaccttatattgtcattattaatatttattgattctaatactacttaattcattgtgattttacgaggaaacata---aacactctttta 98  Q
    |||||||||||| |||||||| |||||||||||||||||||||| |||||||| ||||||||||||||||||| |||||||||||   ||||||||||||    
T  17965950 tttttacaaaaatcttatattatcattattaatatttattgattttaatactatttaattcattgtgattttatgaggaaacataatcaacactctttta 17966049  T
Q  99 atg 101  Q
    |||    
T  17966050 atg 17966052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 6 - 71
Target Start/End: Complemental strand, 25984199 - 25984134
Alignment:
Q  6 tacaaaaaccttatattgtcattattaatatttattgattctaatactacttaattcattgtgatt 71  Q
    ||||||||||||| ||| |||||||| ||||||||||||| ||||| || ||||||||||||||||    
T  25984199 tacaaaaaccttaaattatcattattgatatttattgattttaatattatttaattcattgtgatt 25984134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 108 - 153
Target Start/End: Complemental strand, 25984120 - 25984075
Alignment:
Q  108 attacattaaagaattaaacaagaaagttatgattttctttttctt 153  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||||    
T  25984120 attacattaaagaattaaacatgaaagctatgattttctttttctt 25984075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 77; Significance: 7e-36; HSPs: 2)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 2 - 101
Target Start/End: Original strand, 232629 - 232731
Alignment:
Q  2 tttttacaaaaaccttatattgtcattattaatatttattgattctaatactacttaattcattgtgattttacgaggaaacata---aacactctttta 98  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || ||||||||   ||||||||||||    
T  232629 tttttacaaaaaccttatattgtcattattaatatttattgattctaatactatttaattcattgtgattttaagatgaaacataatcaacactctttta 232728  T
Q  99 atg 101  Q
    |||    
T  232729 atg 232731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 2 - 63
Target Start/End: Complemental strand, 232802 - 232741
Alignment:
Q  2 tttttacaaaaaccttatattgtcattattaatatttattgattctaatactacttaattca 63  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  232802 tttttacaaaaaccttatattgtcattattaatatttattgattctaatactatttaattca 232741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1500 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: scaffold1500
Description:

Target: scaffold1500; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 2 - 71
Target Start/End: Complemental strand, 727 - 658
Alignment:
Q  2 tttttacaaaaaccttatattgtcattattaatatttattgattctaatactacttaattcattgtgatt 71  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||    
T  727 tttttacaaaaaccttatattgtcattactaatatttattgattctaatactatttaattcattgtgatt 658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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