View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11745_low_21 (Length: 561)
Name: NF11745_low_21
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11745_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 444; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 1 - 553
Target Start/End: Original strand, 19032139 - 19032693
Alignment:
| Q |
1 |
gttgtttattaatatatttgaaagaactggttctgcttttggagaagttggtctcaaactagatctacaaaagaacttaattat--gagttttagtagtt |
98 |
Q |
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||||||||||||||| |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
19032139 |
gttgtttattaatat--ttgaaagaacaggttctgcttttgtagaagttggtctcaaactagatctacaaaagaacttaattatatgagttttagtagtt |
19032236 |
T |
|
| Q |
99 |
aattagttgtattatgatgtggtattgtgataagactgagacagttgtagttgaatatccattaaaaacctttttacattgtcacagatttacacctatt |
198 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19032237 |
aattagttgtattatgatgtggtattgtggtaagactgagacagttatagttgaatatccattaaaaacctttttacattgtcacagatttacacctatt |
19032336 |
T |
|
| Q |
199 |
cctcattccttgttttttgtgtgttttcaagatcttatatgtttctctggatcagtaaacttttgggtcaaaaatatatgaccagctgtttttgatctat |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || | |||||||||||| |
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| T |
19032337 |
cctcattccttgttttttgtgtgttttcaagatcttatatgtttctctggatcagtaaacttttggatcaaaaatatatgactagttatttttgatctat |
19032436 |
T |
|
| Q |
299 |
tttatagaggccaatgtgtggttttttcttctctttctattctgtttatatgaatcac--tgtgcgacttattttttaacaataggcaatgattggtaaa |
396 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
19032437 |
tttatagaggccaatgtgtggttttttcttctctttctattctgtttatatgaatcactatgtgcgacttattttttaacaataggcaatgattggtaaa |
19032536 |
T |
|
| Q |
397 |
attctgcaaagac--ctgttttttatactctatttaacaaccactctctattgacttaaatcaagatgagtcacacactttgaaaatggatctgacttaa |
494 |
Q |
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| T |
19032537 |
attctgcaaagaccactttttttaaaactatatttaac--ccagtctctattgacttaaatcaagatgagtcacacactttaaaaatggatctgacttaa |
19032634 |
T |
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| Q |
495 |
agtggtggaacatagatcgatttcatcgaataaaagagttgttcatgacatttctctgc |
553 |
Q |
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| T |
19032635 |
agtggtggaacatagatcgatttcatcgaataaaagagttgttcataacatttctctgc |
19032693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 443 - 529
Target Start/End: Original strand, 46994410 - 46994496
Alignment:
| Q |
443 |
tattgacttaaatcaagatgagtcacacactttgaaaatggatctgacttaaagtggtggaacatagatcgatttcatcgaataaaa |
529 |
Q |
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||||| ||||||||| | || ||| ||||||||| |||||||| | |||||||||||||| |||| || ||||||||| ||||||| |
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| T |
46994410 |
tattggcttaaatcatggtgggtctcacactttggaaatggatatcacttaaagtggtgggtcatacattgatttcatctaataaaa |
46994496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 443 - 521
Target Start/End: Complemental strand, 24681730 - 24681652
Alignment:
| Q |
443 |
tattgacttaaatcaagatgagtcacacactttgaaaatggatctgacttaaagtggtggaacatagatcgatttcatc |
521 |
Q |
| |
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|||||||||||||||||| | ||| |||||||| |||||| ||| |||||||||| ||| ||||| || |||||||| |
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| T |
24681730 |
tattgacttaaatcaagacgggtctcacactttaaaaatgagtcttacttaaagtgatgggacatacattaatttcatc |
24681652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 468 - 533
Target Start/End: Complemental strand, 7775108 - 7775043
Alignment:
| Q |
468 |
cacactttgaaaatggatctgacttaaagtggtggaacatagatcgatttcatcgaataaaagagt |
533 |
Q |
| |
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|||||||||||||| || || || |||||||||| ||||| || ||||||||| ||||||||||| |
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| T |
7775108 |
cacactttgaaaattgaactcacacaaagtggtgggacatacattgatttcatccaataaaagagt |
7775043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 469 - 533
Target Start/End: Original strand, 19494412 - 19494476
Alignment:
| Q |
469 |
acactttgaaaatggatctgacttaaagtggtggaacatagatcgatttcatcgaataaaagagt |
533 |
Q |
| |
|
|||||||||||||||| | || ||||||||||| ||||| || ||||||| | ||||||||||| |
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| T |
19494412 |
acactttgaaaatggaacccacataaagtggtgggacatacattgatttcacccaataaaagagt |
19494476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 443 - 521
Target Start/End: Original strand, 28304063 - 28304141
Alignment:
| Q |
443 |
tattgacttaaatcaagatgagtcacacactttgaaaatggatctgacttaaagtggtggaacatagatcgatttcatc |
521 |
Q |
| |
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||||||||||||||||| || |||||||||||||||||||| | ||| |||||||||| |||| || ||||||||| |
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| T |
28304063 |
tattgacttaaatcaaggtggatcacacactttgaaaatggaccccactaaaagtggtgggacatgcattgatttcatc |
28304141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 443 - 529
Target Start/End: Original strand, 5027443 - 5027529
Alignment:
| Q |
443 |
tattgacttaaatcaagatgagtcacacactttgaaaatggatctgacttaaagtggtggaacatagatcgatttcatcgaataaaa |
529 |
Q |
| |
|
||||| |||||||||||||||||| |||| ||||||||| ||| |||||||||| ||| |||| || |||| |||| ||||||| |
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| T |
5027443 |
tattggcttaaatcaagatgagtctcacattttgaaaatcgattcaacttaaagtgatgggtcatatattgattacatccaataaaa |
5027529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 469 - 533
Target Start/End: Complemental strand, 13070047 - 13069984
Alignment:
| Q |
469 |
acactttgaaaatggatctgacttaaagtggtggaacatagatcgatttcatcgaataaaagagt |
533 |
Q |
| |
|
|||||||||||||||| | || ||||||||||||||||| || ||||||| | ||||||||||| |
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| T |
13070047 |
acactttgaaaatggaacccacataaagtggtggaacatacattgatttca-ccaataaaagagt |
13069984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 469 - 533
Target Start/End: Original strand, 47237814 - 47237878
Alignment:
| Q |
469 |
acactttgaaaatggatctgacttaaagtggtggaacatagatcgatttcatcgaataaaagagt |
533 |
Q |
| |
|
|||||||||||||| | || | ||||||||||| ||||| || ||||||||| ||||||||||| |
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| T |
47237814 |
acactttgaaaatgaaacttatataaagtggtgggacatatattgatttcatccaataaaagagt |
47237878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 469 - 529
Target Start/End: Complemental strand, 35689587 - 35689527
Alignment:
| Q |
469 |
acactttgaaaatggatctgacttaaagtggtggaacatagatcgatttcatcgaataaaa |
529 |
Q |
| |
|
|||||||||||||||| || || ||||||||||| ||||| || ||||||||| ||||||| |
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| T |
35689587 |
acactttgaaaatggaactcacataaagtggtgggacatacattgatttcatccaataaaa |
35689527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 450 - 533
Target Start/End: Original strand, 16314329 - 16314412
Alignment:
| Q |
450 |
ttaaatcaagatgagtcacacactttgaaaatggatctgacttaaagtggtggaacatagatcgatttcatcgaataaaagagt |
533 |
Q |
| |
|
|||||||||| || ||| |||| ||| ||||||||| |||||||||||||||||||| || |||| ||| ||||||||||| |
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|
| T |
16314329 |
ttaaatcaaggtgggtctcacattttaaaaatggattcaacttaaagtggtggaacatacattaattttatccaataaaagagt |
16314412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 493 - 533
Target Start/End: Complemental strand, 31301198 - 31301158
Alignment:
| Q |
493 |
aaagtggtggaacatagatcgatttcatcgaataaaagagt |
533 |
Q |
| |
|
|||||||||||||||| || ||||||||| ||||||||||| |
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|
| T |
31301198 |
aaagtggtggaacatacattgatttcatccaataaaagagt |
31301158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 469 - 529
Target Start/End: Original strand, 43657069 - 43657129
Alignment:
| Q |
469 |
acactttgaaaatggatctgacttaaagtggtggaacatagatcgatttcatcgaataaaa |
529 |
Q |
| |
|
|||||||| ||||||| || || ||||||||||| ||||| || ||||||||| ||||||| |
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|
| T |
43657069 |
acactttggaaatggaactcacataaagtggtgggacatacattgatttcatcaaataaaa |
43657129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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