View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11745_low_210 (Length: 238)

Name: NF11745_low_210
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11745_low_210
NF11745_low_210
[»] chr2 (3 HSPs)
chr2 (1-214)||(13107225-13107438)
chr2 (21-221)||(13109149-13109356)
chr2 (179-214)||(28027942-28027977)
[»] chr3 (2 HSPs)
chr3 (55-133)||(496663-496741)
chr3 (160-214)||(496744-496798)
[»] scaffold0330 (2 HSPs)
scaffold0330 (117-165)||(17190-17238)
scaffold0330 (21-55)||(17104-17138)
[»] scaffold0240 (2 HSPs)
scaffold0240 (117-165)||(1208-1256)
scaffold0240 (21-55)||(1122-1156)
[»] chr7 (2 HSPs)
chr7 (180-214)||(37747954-37747988)
chr7 (180-214)||(37749510-37749544)
[»] chr8 (3 HSPs)
chr8 (178-214)||(43041179-43041215)
chr8 (180-214)||(14196670-14196704)
chr8 (180-214)||(43039324-43039358)
[»] chr4 (2 HSPs)
chr4 (179-214)||(53611217-53611252)
chr4 (21-58)||(53611375-53611412)
[»] chr1 (2 HSPs)
chr1 (179-214)||(31477943-31477978)
chr1 (46-89)||(52236573-52236616)
[»] chr6 (2 HSPs)
chr6 (85-127)||(34391048-34391090)
chr6 (20-58)||(34486404-34486442)


Alignment Details
Target: chr2 (Bit Score: 166; Significance: 6e-89; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 13107225 - 13107438
Alignment:
Q  1 cactctaagtaaaaagattagaatgatcaaactctttattattgaatgtgagagatatcaattacactttacatgactcttatttataggactatacact 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13107225 cactctaagtaaaaagattagaatgatcaaactctttattattgaatgtgagagatatcaattacactttacatgactcttatttataggactatacact 13107324  T
Q  101 agttagttattaactaactaaccactaaccataaccataattgggttaacactttaaccaactaaattaagccatactaactaactaacatcagaatatg 200  Q
    ||||||||||||||||||||| |||||||||| | |||||| |||||||||||||||| ||||||| |||  |||||||| ||| |||||| | ||||||    
T  13107325 agttagttattaactaactaatcactaaccatcatcataatagggttaacactttaactaactaaactaacacatactaattaattaacattaaaatatg 13107424  T
Q  201 aattatacttcaac 214  Q
    ||||||||||||||    
T  13107425 aattatacttcaac 13107438  T

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Target: chr2; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 21 - 221
Target Start/End: Original strand, 13109149 - 13109356
Alignment:
Q  21 gaatgatcaaactctttattattgaatgtgagagatatca--------attacactttacatgactcttatttataggactatacactagttagttatta 112  Q
    ||||||| || |||||||||||||||| |||||||||| |        |||||| ||||||||||| |||||||||  |||||| |||||||||||||||    
T  13109149 gaatgataaatctctttattattgaatatgagagatattagagataaaattaca-tttacatgacttttatttataaaactatatactagttagttatta 13109247  T
Q  113 actaactaaccactaaccataaccataattgggttaacactttaaccaactaaattaagccatactaactaactaacatcagaatatgaattatacttca 212  Q
    ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |||||| ||||||||||||||||| ||    
T  13109248 actaactaaccactaaccataaccataattgggttaacattttaactaactaaattaagccatactaactaagtaacattagaatatgaattatactcca 13109347  T
Q  213 acgctcttt 221  Q
    |||||||||    
T  13109348 acgctcttt 13109356  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 214
Target Start/End: Complemental strand, 28027977 - 28027942
Alignment:
Q  179 aactaactaacatcagaatatgaattatacttcaac 214  Q
    ||||||||||||| ||||||||||||||||||||||    
T  28027977 aactaactaacattagaatatgaattatacttcaac 28027942  T

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Target: chr3 (Bit Score: 67; Significance: 7e-30; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 55 - 133
Target Start/End: Original strand, 496663 - 496741
Alignment:
Q  55 atatcaattacactttacatgactcttatttataggactatacactagttagttattaactaactaaccactaaccata 133  Q
    ||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||    
T  496663 atatcaattacactttacatgactcttatttatagtactatgcaatagttagttattaactaactaaccactaaccata 496741  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 160 - 214
Target Start/End: Original strand, 496744 - 496798
Alignment:
Q  160 aactaaattaagccatactaactaactaacatcagaatatgaattatacttcaac 214  Q
    ||||||| ||| || ||||||||||||||||| ||||||||||| ||||||||||    
T  496744 aactaaactaacccttactaactaactaacattagaatatgaataatacttcaac 496798  T

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Target: scaffold0330 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 117 - 165
Target Start/End: Original strand, 17190 - 17238
Alignment:
Q  117 actaaccactaaccataaccataattgggttaacactttaaccaactaa 165  Q
    ||||||||||||||||||||||| |||||||||||| ||||||||||||    
T  17190 actaaccactaaccataaccatatttgggttaacaccttaaccaactaa 17238  T

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Target: scaffold0330; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 55
Target Start/End: Original strand, 17104 - 17138
Alignment:
Q  21 gaatgatcaaactctttattattgaatgtgagaga 55  Q
    ||||||| |||||||||||||||||||||||||||    
T  17104 gaatgataaaactctttattattgaatgtgagaga 17138  T

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Target: scaffold0240 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 117 - 165
Target Start/End: Original strand, 1208 - 1256
Alignment:
Q  117 actaaccactaaccataaccataattgggttaacactttaaccaactaa 165  Q
    ||||||||||||||||||||||| |||||||||||| ||||||||||||    
T  1208 actaaccactaaccataaccatatttgggttaacaccttaaccaactaa 1256  T

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Target: scaffold0240; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 55
Target Start/End: Original strand, 1122 - 1156
Alignment:
Q  21 gaatgatcaaactctttattattgaatgtgagaga 55  Q
    ||||||| |||||||||||||||||||||||||||    
T  1122 gaatgataaaactctttattattgaatgtgagaga 1156  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 180 - 214
Target Start/End: Original strand, 37747954 - 37747988
Alignment:
Q  180 actaactaacatcagaatatgaattatacttcaac 214  Q
    |||||||||||||||||||||||||||||||||||    
T  37747954 actaactaacatcagaatatgaattatacttcaac 37747988  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 214
Target Start/End: Original strand, 37749510 - 37749544
Alignment:
Q  180 actaactaacatcagaatatgaattatacttcaac 214  Q
    |||||||||||| ||||||||||||||||||||||    
T  37749510 actaactaacattagaatatgaattatacttcaac 37749544  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 214
Target Start/End: Complemental strand, 43041215 - 43041179
Alignment:
Q  178 taactaactaacatcagaatatgaattatacttcaac 214  Q
    |||||||||||||| ||||||||||||||||||||||    
T  43041215 taactaactaacattagaatatgaattatacttcaac 43041179  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 214
Target Start/End: Complemental strand, 14196704 - 14196670
Alignment:
Q  180 actaactaacatcagaatatgaattatacttcaac 214  Q
    |||||||||||| ||||||||||||||||||||||    
T  14196704 actaactaacattagaatatgaattatacttcaac 14196670  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 214
Target Start/End: Complemental strand, 43039358 - 43039324
Alignment:
Q  180 actaactaacatcagaatatgaattatacttcaac 214  Q
    |||||||||||| ||||||||||||||||||||||    
T  43039358 actaactaacattagaatatgaattatacttcaac 43039324  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 214
Target Start/End: Complemental strand, 53611252 - 53611217
Alignment:
Q  179 aactaactaacatcagaatatgaattatacttcaac 214  Q
    ||||||||||||| ||||||||||||||||||||||    
T  53611252 aactaactaacattagaatatgaattatacttcaac 53611217  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 58
Target Start/End: Complemental strand, 53611412 - 53611375
Alignment:
Q  21 gaatgatcaaactctttattattgaatgtgagagatat 58  Q
    ||||||| ||||||||||||||||||| ||||||||||    
T  53611412 gaatgataaaactctttattattgaatttgagagatat 53611375  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 214
Target Start/End: Complemental strand, 31477978 - 31477943
Alignment:
Q  179 aactaactaacatcagaatatgaattatacttcaac 214  Q
    ||||||||||||| ||||||||||||||||||||||    
T  31477978 aactaactaacattagaatatgaattatacttcaac 31477943  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 89
Target Start/End: Complemental strand, 52236616 - 52236573
Alignment:
Q  46 atgtgagagatatcaattacactttacatgactcttatttatag 89  Q
    ||||||| ||||||||||||||||||||||||||  ||||||||    
T  52236616 atgtgagtgatatcaattacactttacatgactccgatttatag 52236573  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 127
Target Start/End: Complemental strand, 34391090 - 34391048
Alignment:
Q  85 tataggactatacactagttagttattaactaactaaccacta 127  Q
    |||||||||||||| ||||||| |||||||||||||| |||||    
T  34391090 tataggactatacaatagttagctattaactaactaagcacta 34391048  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 58
Target Start/End: Original strand, 34486404 - 34486442
Alignment:
Q  20 agaatgatcaaactctttattattgaatgtgagagatat 58  Q
    |||||||| ||||||||||||||| ||||||||||||||    
T  34486404 agaatgataaaactctttattattaaatgtgagagatat 34486442  T

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