View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11745_low_214 (Length: 238)
Name: NF11745_low_214
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11745_low_214 |
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Alignment Details
Target: chr1 (Bit Score: 181; Significance: 6e-98; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 7605959 - 7605737
Alignment:
| Q |
1 |
tgatgattgatgtaacttctagaattctggtatgcacttagtttcaagnnnnnnnnnn-aaatttgtaaattgtcatatgttctaacacttgcttttaat |
99 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
7605959 |
tgatgattgatgtaacttctagaattctggtatgcacttagtttcaaaattttttttttaaatttgtaaattgtcatatgttctaacacttgcttttaat |
7605860 |
T |
|
| Q |
100 |
tcatatgaaaataaacttagacttggtttggattttgtcgaactgctctgctaaataatgacacctaactgattttggtggattactttggctatagctg |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7605859 |
tcatatgaaaataaacttagacttggtttggattttgtcgaactgctctgctaaataatgacacctaactgattttggtggattactttggctatagctg |
7605760 |
T |
|
| Q |
200 |
gaaatgtgtattgaagtttctcc |
222 |
Q |
| |
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||||||||||||||||||||||| |
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|
| T |
7605759 |
gaaatgtgtattgaagtttctcc |
7605737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 31769520 - 31769291
Alignment:
| Q |
1 |
tgatgattgatgtaacttctagaattctggtatgcacttagtttcaagnnnnnnnnnna--------aatttgtaaattgtcatatgttctaacacttgc |
92 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
31769520 |
tgatgattgatgtaacttctagaattctggtatgcacttagtttcaagtttttttttttttttttttaatttgtaaattgtcatatgttctaacacttgc |
31769421 |
T |
|
| Q |
93 |
ttttaattcatatgaaaataaacttagacttggtttggattttgtcgaactgctctgctaaataatgacacctaactgattttggtggattactttggct |
192 |
Q |
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| T |
31769420 |
ttttaattcatatgaaaataaacttagacttggtttggattttgtcgaacggctctgctaaataatgacacctaactgattttggtggattactttggct |
31769321 |
T |
|
| Q |
193 |
atagctggaaatgtgtattgaagtttctcc |
222 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
31769320 |
atagctggaaatgtgtattgaagtttctcc |
31769291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 62 - 222
Target Start/End: Original strand, 14186450 - 14186610
Alignment:
| Q |
62 |
tttgtaaattgtcatatgttctaacacttgcttttaattcatatgaaaataaacttagacttggtttggattttgtcgaactgctctgctaaataatgac |
161 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14186450 |
tttgtaaattgtcttatgttctaacacttgcttttaattcatacgaaaataaacttagacttggtttggattttgtcgaactgctctgctaaataatgac |
14186549 |
T |
|
| Q |
162 |
acctaactgattttggtggattactttggctatagctggaaatgtgtattgaagtttctcc |
222 |
Q |
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|
| T |
14186550 |
acctaactaattttggtggattactttggctataactggaaatgtgtattgaagtttctcc |
14186610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 41812443 - 41812666
Alignment:
| Q |
1 |
tgatgattgatgtaacttctagaattctggtatgcacttagtttcaagnnnnnnnnnn--aaatttgtaaattgtcatatgttctaacacttgcttttaa |
98 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |
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| T |
41812443 |
tgatgattgatgtaacttctagaattctggtatgcacttagtttcaaattttttttttttaaatttgtaaattgtcgtatgttctaacacttgcttttaa |
41812542 |
T |
|
| Q |
99 |
ttcatatgaaaataaacttagacttggtttggattttgtcgaactgctctgctaaataatgacacctaactgattttggtggattactttggctatagct |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41812543 |
ttcatatgaaaataaacttagacttggtttggattttgtcgaactgctctgctaaataatgacacctaactgattttggtggattactttggctatagct |
41812642 |
T |
|
| Q |
199 |
ggaaatgtgtattgaagtttctcc |
222 |
Q |
| |
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|||||||||||||||||||||||| |
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|
| T |
41812643 |
ggaaatgtgtattgaagtttctcc |
41812666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 72 - 219
Target Start/End: Complemental strand, 20902404 - 20902257
Alignment:
| Q |
72 |
gtcatatgttctaacacttgcttttaattcatatgaaaataaacttagacttggtttggattttgtcgaactgctctgctaaataatgacacctaactga |
171 |
Q |
| |
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|||||||||||||||||||||||||| |||| ||| ||||| || | ||||||| | |||| |||||||||||||| || |||||||| || ||||||| |
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| T |
20902404 |
gtcatatgttctaacacttgcttttagttcacatgcaaatagaccttgacttggctgagattctgtcgaactgctcttctgaataatgagacataactga |
20902305 |
T |
|
| Q |
172 |
ttttggtggattactttggctatagctggaaatgtgtattgaagtttc |
219 |
Q |
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|||||||||||||||||||||||| ||||||||||||||| ||||||| |
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| T |
20902304 |
ttttggtggattactttggctataactggaaatgtgtatttaagtttc |
20902257 |
T |
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