View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11745_low_217 (Length: 237)
Name: NF11745_low_217
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11745_low_217 |
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Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 2017188 - 2016970
Alignment:
| Q |
1 |
acaagacaacattttagtcaataaaattcatacatggaatgcatgttaaaacattacacataagaagacttggagaaaataccatgtcaagcttccagtt |
100 |
Q |
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| T |
2017188 |
acaagacaacattttaatcaataaaatatattcatggaatacatgttaaaacattacatataagaagacttggagaaaataccatgtcaagcttccagtt |
2017089 |
T |
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| Q |
101 |
ccaggaaaagcatgcaaaatcttccgaatgtaattgctacaagcctacaacaaaataaaaacgttaaccagaggaaaatttgagtaacaaatgaagaaga |
200 |
Q |
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| T |
2017088 |
tcaggaaaagcatgcaaaatcttccgaatgtaattgctacaagcctacaacaaaataaaaacgttaaccagaggaaaatttgagtaacaaatgaagaaga |
2016989 |
T |
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| Q |
201 |
aaacaaataagaaaggata |
219 |
Q |
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| T |
2016988 |
aaacaaataagaaaggata |
2016970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 70
Target Start/End: Complemental strand, 2018844 - 2018807
Alignment:
| Q |
33 |
catggaatgcatgttaaaacattacacataagaagact |
70 |
Q |
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| T |
2018844 |
catggaatgcatgttaaaacattacacagaataagact |
2018807 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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