View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11745_low_221 (Length: 233)

Name: NF11745_low_221
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11745_low_221
NF11745_low_221
[»] chr6 (10 HSPs)
chr6 (1-222)||(27587813-27588034)
chr6 (82-146)||(27312866-27312930)
chr6 (82-146)||(27700879-27700943)
chr6 (82-140)||(25487868-25487926)
chr6 (82-140)||(26061116-26061174)
chr6 (82-140)||(26081086-26081144)
chr6 (82-142)||(26634379-26634439)
chr6 (82-142)||(26740355-26740415)
chr6 (82-122)||(27659788-27659828)
chr6 (83-163)||(27712414-27712493)
[»] chr2 (1 HSPs)
chr2 (36-149)||(17989340-17989453)
[»] chr4 (1 HSPs)
chr4 (81-164)||(5083591-5083674)


Alignment Details
Target: chr6 (Bit Score: 222; Significance: 1e-122; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 27587813 - 27588034
Alignment:
Q  1 catcctccacaaaaccttacatcaggtctcactatatcaataccagagcaccgtagtttgattcttaagaacggaagtcgtgactcatgcaaaaggatct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27587813 catcctccacaaaaccttacatcaggtctcactatatcaataccagagcaccgtagtttgattcttaagaacggaagtcgtgactcatgcaaaaggatct 27587912  T
Q  101 tataaatgtcggttgtcagattcagttctttatcccacattacttcctgtacatcagaaagctcattaccatagttgcttcaacctggtatgcacatttt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27587913 tataaatgtcggttgtcagattcagttctttatcccacattacttcctgtacatcagaaagctcattaccatagttgcttcaacctggtatgcacatttt 27588012  T
Q  201 acataaatcaaataataataat 222  Q
    ||||||||||||||||||||||    
T  27588013 acataaatcaaataataataat 27588034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 82 - 146
Target Start/End: Original strand, 27312866 - 27312930
Alignment:
Q  82 gactcatgcaaaaggatcttataaatgtcggttgtcagattcagttctttatcccacattacttc 146  Q
    ||||| ||||||||||||| ||||||||||||| | ||||| ||||||||||| |||||||||||    
T  27312866 gactcttgcaaaaggatctcataaatgtcggttcttagatttagttctttatcacacattacttc 27312930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 82 - 146
Target Start/End: Original strand, 27700879 - 27700943
Alignment:
Q  82 gactcatgcaaaaggatcttataaatgtcggttgtcagattcagttctttatcccacattacttc 146  Q
    ||||| ||||||||||||| |||||||| |||| | ||||| ||||||||||| |||||||||||    
T  27700879 gactcttgcaaaaggatctcataaatgttggttcttagatttagttctttatcacacattacttc 27700943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 82 - 140
Target Start/End: Complemental strand, 25487926 - 25487868
Alignment:
Q  82 gactcatgcaaaaggatcttataaatgtcggttgtcagattcagttctttatcccacat 140  Q
    ||||| ||||||||||||| || |||||||||| ||||||| | |||||||||||||||    
T  25487926 gactcttgcaaaaggatctcatgaatgtcggttctcagatttatttctttatcccacat 25487868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 140
Target Start/End: Complemental strand, 26061174 - 26061116
Alignment:
Q  82 gactcatgcaaaaggatcttataaatgtcggttgtcagattcagttctttatcccacat 140  Q
    ||||| ||||||||||||| || |||||||||| || |||| | |||||||||||||||    
T  26061174 gactcttgcaaaaggatctcatgaatgtcggttctcggatttatttctttatcccacat 26061116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 140
Target Start/End: Complemental strand, 26081144 - 26081086
Alignment:
Q  82 gactcatgcaaaaggatcttataaatgtcggttgtcagattcagttctttatcccacat 140  Q
    ||||| ||||||||||||| || |||||||||| || |||| | |||||||||||||||    
T  26081144 gactcttgcaaaaggatctcatgaatgtcggttctcggatttatttctttatcccacat 26081086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 142
Target Start/End: Complemental strand, 26634439 - 26634379
Alignment:
Q  82 gactcatgcaaaaggatcttataaatgtcggttgtcagattcagttctttatcccacatta 142  Q
    ||||| |||| |||||| | ||||||||||||| | ||||| ||||||||||| |||||||    
T  26634439 gactcttgcagaaggatttcataaatgtcggttcttagatttagttctttatcacacatta 26634379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 142
Target Start/End: Complemental strand, 26740415 - 26740355
Alignment:
Q  82 gactcatgcaaaaggatcttataaatgtcggttgtcagattcagttctttatcccacatta 142  Q
    ||||| |||| |||||| | ||||||||||||| | ||||| ||||||||||| |||||||    
T  26740415 gactcttgcagaaggatttcataaatgtcggttcttagatttagttctttatcacacatta 26740355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 122
Target Start/End: Original strand, 27659788 - 27659828
Alignment:
Q  82 gactcatgcaaaaggatcttataaatgtcggttgtcagatt 122  Q
    ||||| ||||||||||||| ||||||||||||| |||||||    
T  27659788 gactcttgcaaaaggatctcataaatgtcggttatcagatt 27659828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 163
Target Start/End: Original strand, 27712414 - 27712493
Alignment:
Q  83 actcatgcaaaaggatcttataaatgtcggttgtcagattcagttctttatcccacattacttcctgtacatcagaaagct 163  Q
    |||| ||||||||||||| |||||||| |||| | ||||| |||| ||||||   ||||||||||| || |||||||||||    
T  27712414 actcttgcaaaaggatctcataaatgttggttcttagatttagtt-tttatcatgcattacttcctctaaatcagaaagct 27712493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 36 - 149
Target Start/End: Original strand, 17989340 - 17989453
Alignment:
Q  36 atcaataccagagcaccgtagtttgattcttaagaacggaagtcgtgactcatgcaaaaggatcttataaatgtcggttgtcagattcagttctttatcc 135  Q
    ||||| ||| |||||| | |||| ||||||  |||||  |||||||||||| ||| ||||||||  |||||||| |||| ||||||||||||||||||||    
T  17989340 atcaagaccggagcacggcagttggattctggagaacacaagtcgtgactcttgccaaaggatcggataaatgttggttctcagattcagttctttatcc 17989439  T
Q  136 cacattacttcctg 149  Q
    ||||||||||||||    
T  17989440 cacattacttcctg 17989453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 81 - 164
Target Start/End: Complemental strand, 5083674 - 5083591
Alignment:
Q  81 tgactcatgcaaaaggatcttataaatgtcggttgtcagattcagttctttatcccacattacttcctgtacatcagaaagctc 164  Q
    |||||| ||||||||||||| ||||||||| ||| | ||||| ||||||||||| | ||||||||| |||| ||||||||||||    
T  5083674 tgactcttgcaaaaggatctcataaatgtcagttcttagatttagttctttatcacgcattacttcttgtagatcagaaagctc 5083591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University