View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11745_low_227 (Length: 229)
Name: NF11745_low_227
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11745_low_227 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 7 - 229
Target Start/End: Complemental strand, 26835754 - 26835532
Alignment:
| Q |
7 |
gcatgcacatgaagtcattttgtcttatagaaaaaacaccattaaaaaatgtaataatgctctaggtattttccttgaccagtctcagaatcatatcagt |
106 |
Q |
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|||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||| |
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| T |
26835754 |
gcatgcacatgaagtcattttgtcttatggaaaaaacacaattaaaaaatgtaataatgctctaggtattttcctcgacctgtctcagaatcatagtagt |
26835655 |
T |
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| Q |
107 |
atcatagtaacgtgtgtgtttttgaaacaacgttgtttggatggtcaaacttcactttgatctacatgtttatgtccacgcagccaacatatataccata |
206 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26835654 |
atcatagtaacgtgtgtgtttttgaaacaatgttgtttggatggtcaaacttcactttgatctacatgtttatgtccacgcagccaacatatataccata |
26835555 |
T |
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| Q |
207 |
aatgaaatattcgtggaatatca |
229 |
Q |
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||||||||||||||||||||||| |
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| T |
26835554 |
aatgaaatattcgtggaatatca |
26835532 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 7 - 116
Target Start/End: Complemental strand, 45420646 - 45420537
Alignment:
| Q |
7 |
gcatgcacatgaagtcattttgtcttatagaaaaaacaccattaaaaaatgtaataatgctctaggtattttccttgaccagtctcagaatcatatcagt |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||| ||| |
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| T |
45420646 |
gcatgcacatgaagtcattttgtcttatagaaaaaacaccattaaaaattgtaataatgctctaggtattttcctcgaccagtctcagaatgatagtagt |
45420547 |
T |
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| Q |
107 |
atcatagtaa |
116 |
Q |
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|||||||||| |
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| T |
45420546 |
atcatagtaa |
45420537 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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