View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11745_low_23 (Length: 557)

Name: NF11745_low_23
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11745_low_23
NF11745_low_23
[»] chr3 (7 HSPs)
chr3 (8-83)||(53155541-53155616)
chr3 (272-335)||(47944337-47944400)
chr3 (7-70)||(31270279-31270345)
chr3 (7-62)||(32080864-32080919)
chr3 (284-333)||(34979177-34979226)
chr3 (13-62)||(48400863-48400912)
chr3 (7-70)||(31462856-31462922)
[»] chr2 (11 HSPs)
chr2 (13-88)||(34416869-34416944)
chr2 (7-58)||(27095673-27095724)
chr2 (285-350)||(14441108-14441174)
chr2 (7-63)||(25067815-25067871)
chr2 (7-62)||(12704651-12704706)
chr2 (7-62)||(13879116-13879171)
chr2 (7-62)||(14019241-14019296)
chr2 (7-62)||(32015184-32015239)
chr2 (8-62)||(43474231-43474285)
chr2 (13-62)||(5754252-5754301)
chr2 (282-334)||(43191975-43192027)
[»] chr8 (10 HSPs)
chr8 (7-88)||(1810329-1810410)
chr8 (13-50)||(1810431-1810468)
chr8 (284-349)||(6915516-6915581)
chr8 (7-64)||(37612615-37612672)
chr8 (7-62)||(11161846-11161901)
chr8 (8-62)||(2025320-2025374)
chr8 (8-62)||(24699794-24699848)
chr8 (13-62)||(31202422-31202471)
chr8 (13-62)||(31308106-31308155)
chr8 (128-191)||(21145584-21145648)
[»] chr7 (9 HSPs)
chr7 (7-83)||(28665014-28665090)
chr7 (128-214)||(3725814-3725900)
chr7 (3-62)||(17509301-17509360)
chr7 (3-62)||(17543854-17543913)
chr7 (179-230)||(23457816-23457867)
chr7 (284-335)||(23457816-23457867)
chr7 (7-59)||(10574348-10574400)
chr7 (6-62)||(11832982-11833038)
chr7 (7-59)||(40761556-40761608)
[»] chr1 (10 HSPs)
chr1 (280-352)||(8234312-8234384)
chr1 (15-62)||(17347563-17347610)
chr1 (13-62)||(27534663-27534712)
chr1 (7-62)||(424393-424448)
chr1 (8-62)||(20411537-20411591)
chr1 (7-61)||(29205250-29205304)
chr1 (7-64)||(14265246-14265303)
chr1 (296-333)||(25255908-25255945)
chr1 (13-62)||(28678238-28678287)
chr1 (272-317)||(35607217-35607262)
[»] chr6 (3 HSPs)
chr6 (271-349)||(29920458-29920537)
chr6 (282-335)||(9307284-9307337)
chr6 (275-335)||(10067713-10067773)
[»] chr5 (3 HSPs)
chr5 (7-70)||(7771908-7771971)
chr5 (7-88)||(27241002-27241083)
chr5 (7-63)||(17096344-17096400)
[»] scaffold0536 (1 HSPs)
scaffold0536 (7-88)||(2838-2919)
[»] chr4 (5 HSPs)
chr4 (13-62)||(24825613-24825662)
chr4 (13-88)||(478119-478194)
chr4 (7-62)||(26674336-26674391)
chr4 (13-62)||(6911644-6911693)
chr4 (284-328)||(8755847-8755891)
[»] scaffold0312 (1 HSPs)
scaffold0312 (7-62)||(6101-6156)


Alignment Details
Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 8 - 83
Target Start/End: Original strand, 53155541 - 53155616
Alignment:
Q  8 gggtaatttttaggtcaaaattgaccctagatcatccatctaacaagaagaagaaaatggtgatggttagggtttg 83  Q
    |||| |||||| ||||||||||||||||| |||| || ||||| ||||||||||||||||||||||||||||||||    
T  53155541 gggtgatttttgggtcaaaattgaccctaaatcacccctctaaaaagaagaagaaaatggtgatggttagggtttg 53155616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 272 - 335
Target Start/End: Complemental strand, 47944400 - 47944337
Alignment:
Q  272 aacgtcatagattattttgattaacaaaatgaataatcaaaaactattataaaatttcgataca 335  Q
    ||||||||| |||||||||| ||||||| || | ||||||| |||||| |||||||||||||||    
T  47944400 aacgtcatatattattttgactaacaaagtgcacaatcaaagactattttaaaatttcgataca 47944337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 7 - 70
Target Start/End: Complemental strand, 31270345 - 31270279
Alignment:
Q  7 ggggtaatttttaggtcaaaattgaccctagatcatccatctaacaag---aagaagaaaatggtga 70  Q
    ||||| |||||| ||||||||||||||||| |||| |||||||| |||   ||||||||||||||||    
T  31270345 ggggtgatttttgggtcaaaattgaccctaaatcacccatctaaaaagaataagaagaaaatggtga 31270279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 62
Target Start/End: Original strand, 32080864 - 32080919
Alignment:
Q  7 ggggtaatttttaggtcaaaattgaccctagatcatccatctaacaagaagaagaa 62  Q
    ||||| |||||| ||||||||||||||||| |||| |||||| |||| ||||||||    
T  32080864 ggggtgatttttgggtcaaaattgaccctaaatcacccatctgacaacaagaagaa 32080919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 284 - 333
Target Start/End: Original strand, 34979177 - 34979226
Alignment:
Q  284 tattttgattaacaaaatgaataatcaaaaactattataaaatttcgata 333  Q
    |||||||| |||||||||| | ||| |||||||||| |||||||||||||    
T  34979177 tattttgactaacaaaatgcacaattaaaaactattttaaaatttcgata 34979226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 48400912 - 48400863
Alignment:
Q  13 atttttaggtcaaaattgaccctagatcatccatctaacaagaagaagaa 62  Q
    |||||| ||||||||||||||||| |||| || ||||| |||||||||||    
T  48400912 atttttgggtcaaaattgaccctaaatcacccctctaaaaagaagaagaa 48400863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 7 - 70
Target Start/End: Original strand, 31462856 - 31462922
Alignment:
Q  7 ggggtaatttttaggtcaaaattgaccctagatcatccatct---aacaagaagaagaaaatggtga 70  Q
    ||||| |||||| ||||||||||||||||| |||| || |||   || |||||||||||||||||||    
T  31462856 ggggtgatttttgggtcaaaattgaccctaaatcacccctctgaaaagaagaagaagaaaatggtga 31462922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 13 - 88
Target Start/End: Original strand, 34416869 - 34416944
Alignment:
Q  13 atttttaggtcaaaattgaccctagatcatccatctaacaagaagaagaaaatggtgatggttagggtttgcgaag 88  Q
    |||||| |||||||||||||| |||||||||| ||| | ||||||||||||  ||||| |||||||||||| ||||    
T  34416869 attttttggtcaaaattgaccttagatcatccctctgaaaagaagaagaaagaggtgacggttagggtttgagaag 34416944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 7 - 58
Target Start/End: Complemental strand, 27095724 - 27095673
Alignment:
Q  7 ggggtaatttttaggtcaaaattgaccctagatcatccatctaacaagaaga 58  Q
    ||||| |||||||||||||||||||||||| |||| |||||| |||||||||    
T  27095724 ggggtgatttttaggtcaaaattgaccctaaatcacccatctgacaagaaga 27095673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 285 - 350
Target Start/End: Original strand, 14441108 - 14441174
Alignment:
Q  285 attttgattaacaaaatgaataatcaaaaactattataaaatttcgatacaataag-gattattgta 350  Q
    ||||||||||||| |||| ||||||| | |||||| ||||||||||||||||| || ||||||||||    
T  14441108 attttgattaacataatgcataatcatatactattttaaaatttcgatacaatgagagattattgta 14441174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 7 - 63
Target Start/End: Complemental strand, 25067871 - 25067815
Alignment:
Q  7 ggggtaatttttaggtcaaaattgaccctagatcatccatctaacaagaagaagaaa 63  Q
    ||||| |||||| ||||||||||||||||| |||| |  ||||||||||||||||||    
T  25067871 ggggtgatttttgggtcaaaattgaccctaaatcacctctctaacaagaagaagaaa 25067815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 62
Target Start/End: Complemental strand, 12704706 - 12704651
Alignment:
Q  7 ggggtaatttttaggtcaaaattgaccctagatcatccatctaacaagaagaagaa 62  Q
    ||||| |||||| ||||||||||||||||| |||| || ||||| |||||||||||    
T  12704706 ggggtgatttttgggtcaaaattgaccctaaatcacccctctaaaaagaagaagaa 12704651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 62
Target Start/End: Original strand, 13879116 - 13879171
Alignment:
Q  7 ggggtaatttttaggtcaaaattgaccctagatcatccatctaacaagaagaagaa 62  Q
    ||||| ||| || ||||||||||||||||| ||||||| ||| |||||||||||||    
T  13879116 ggggtgattattgggtcaaaattgaccctaaatcatccctctgacaagaagaagaa 13879171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 62
Target Start/End: Original strand, 14019241 - 14019296
Alignment:
Q  7 ggggtaatttttaggtcaaaattgaccctagatcatccatctaacaagaagaagaa 62  Q
    ||||| ||| || ||||||||||||||||| ||||||| ||| |||||||||||||    
T  14019241 ggggtgattattgggtcaaaattgaccctaaatcatccctctgacaagaagaagaa 14019296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 62
Target Start/End: Complemental strand, 32015239 - 32015184
Alignment:
Q  7 ggggtaatttttaggtcaaaattgaccctagatcatccatctaacaagaagaagaa 62  Q
    ||||| |||||| ||||||||||||||||| |||| || |||||||| ||||||||    
T  32015239 ggggtgatttttgggtcaaaattgaccctaaatcacccctctaacaaaaagaagaa 32015184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 8 - 62
Target Start/End: Original strand, 43474231 - 43474285
Alignment:
Q  8 gggtaatttttaggtcaaaattgaccctagatcatccatctaacaagaagaagaa 62  Q
    |||| |||||| ||||||||||||||||| |||| || ||||| |||||||||||    
T  43474231 gggtgatttttgggtcaaaattgaccctaaatcacccctctaaaaagaagaagaa 43474285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 5754301 - 5754252
Alignment:
Q  13 atttttaggtcaaaattgaccctagatcatccatctaacaagaagaagaa 62  Q
    |||||| ||||||||||||||||| |||| || ||||| |||||||||||    
T  5754301 atttttgggtcaaaattgaccctaaatcacccctctaaaaagaagaagaa 5754252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 282 - 334
Target Start/End: Original strand, 43191975 - 43192027
Alignment:
Q  282 attattttgattaacaaaatgaataatcaaaaactattataaaatttcgatac 334  Q
    |||||||||||||| |||||| | ||| |||||||||| |||||||| |||||    
T  43191975 attattttgattaataaaatgtacaataaaaaactattttaaaattttgatac 43192027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 7 - 88
Target Start/End: Original strand, 1810329 - 1810410
Alignment:
Q  7 ggggtaatttttaggtcaaaattgaccctagatcatccatctaacaagaagaagaaaatggtgatggttagggtttgcgaag 88  Q
    ||||| |||||| ||||||||||||||||| |||| || ||||| ||||||||||||| ||||| |  ||||||||| ||||    
T  1810329 ggggtgatttttgggtcaaaattgaccctaaatcacccctctaaaaagaagaagaaaagggtgacgactagggtttgggaag 1810410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 13 - 50
Target Start/End: Complemental strand, 1810468 - 1810431
Alignment:
Q  13 atttttaggtcaaaattgaccctagatcatccatctaa 50  Q
    |||||||||||||||||||||||| |||||||||||||    
T  1810468 atttttaggtcaaaattgaccctaaatcatccatctaa 1810431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 284 - 349
Target Start/End: Original strand, 6915516 - 6915581
Alignment:
Q  284 tattttgattaacaaaatgaataatcaaaaactattataaaatttcgatacaataaggattattgt 349  Q
    |||||||||||||| |||| | ||||||||| |||| |||||||| |||||| |||||| ||||||    
T  6915516 tattttgattaacataatgcacaatcaaaaattattttaaaattttgatacattaaggactattgt 6915581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 7 - 64
Target Start/End: Complemental strand, 37612672 - 37612615
Alignment:
Q  7 ggggtaatttttaggtcaaaattgaccctagatcatccatctaacaagaagaagaaaa 64  Q
    ||||| |||||| ||||||||||||||||| |||| || ||||| |||||||||||||    
T  37612672 ggggtgatttttgggtcaaaattgaccctaaatcacccctctaaaaagaagaagaaaa 37612615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 62
Target Start/End: Complemental strand, 11161901 - 11161846
Alignment:
Q  7 ggggtaatttttaggtcaaaattgaccctagatcatccatctaacaagaagaagaa 62  Q
    ||||| |||||| ||||||||||||||||| || | || |||||||||||||||||    
T  11161901 ggggtgatttttgggtcaaaattgaccctaaattacccctctaacaagaagaagaa 11161846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 8 - 62
Target Start/End: Original strand, 2025320 - 2025374
Alignment:
Q  8 gggtaatttttaggtcaaaattgaccctagatcatccatctaacaagaagaagaa 62  Q
    |||| |||||| |||||||||||||| || |||| || |||||||||||||||||    
T  2025320 gggtgattttttggtcaaaattgaccataaatcacccctctaacaagaagaagaa 2025374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 8 - 62
Target Start/End: Complemental strand, 24699848 - 24699794
Alignment:
Q  8 gggtaatttttaggtcaaaattgaccctagatcatccatctaacaagaagaagaa 62  Q
    |||| |||||| ||||||||||||||||| |||| || ||| |||||||||||||    
T  24699848 gggtgatttttgggtcaaaattgaccctaaatcacccttctgacaagaagaagaa 24699794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 31202471 - 31202422
Alignment:
Q  13 atttttaggtcaaaattgaccctagatcatccatctaacaagaagaagaa 62  Q
    |||||| |||||||||||||| || |||| |||||||| |||||||||||    
T  31202471 atttttgggtcaaaattgaccttaaatcacccatctaaaaagaagaagaa 31202422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 31308155 - 31308106
Alignment:
Q  13 atttttaggtcaaaattgaccctagatcatccatctaacaagaagaagaa 62  Q
    |||||||| |||||||||||| || |||| || |||||||||||||||||    
T  31308155 atttttagatcaaaattgaccttaaatcacccctctaacaagaagaagaa 31308106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 128 - 191
Target Start/End: Original strand, 21145584 - 21145648
Alignment:
Q  128 tatattaaaagagttaatgttagcattaatgaactattttaacatcataga-tattttgattaac 191  Q
    ||||| |||||||||||||| |||||| | | ||||||||||||||| ||| |||||||| ||||    
T  21145584 tatataaaaagagttaatgtcagcattgagggactattttaacatcagagactattttgactaac 21145648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 7 - 83
Target Start/End: Original strand, 28665014 - 28665090
Alignment:
Q  7 ggggtaatttttaggtcaaaattgaccctagatcatccatctaacaagaagaagaaaatggtgatggttagggtttg 83  Q
    ||||| |||||  ||||||||||||||||| |||| |||||| ||||||||||||||  ||||| ||| ||||||||    
T  28665014 ggggtgattttagggtcaaaattgaccctaaatcacccatctgacaagaagaagaaaggggtgacggtcagggtttg 28665090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 128 - 214
Target Start/End: Original strand, 3725814 - 3725900
Alignment:
Q  128 tatattaaaagagttaatgttagcattaatgaactattttaacatcataga-tattttgattaacaaaatgaacaatcaaaaactatt 214  Q
    ||||| |||||||||||||||| |||||||||| |||||||   ||||||| | |||||||||| ||| ||||||||||| |||||||    
T  3725814 tatatgaaaagagttaatgttaacattaatgaattattttattgtcatagactgttttgattaa-aaagtgaacaatcaagaactatt 3725900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 62
Target Start/End: Original strand, 17509301 - 17509360
Alignment:
Q  3 tcggggggtaatttttaggtcaaaattgaccctagatcatccatctaacaagaagaagaa 62  Q
    |||| |||| |||||| ||||||||||||||||| ||||||| ||| | |||||||||||    
T  17509301 tcggagggtgattttttggtcaaaattgaccctaaatcatccctctgaaaagaagaagaa 17509360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 62
Target Start/End: Complemental strand, 17543913 - 17543854
Alignment:
Q  3 tcggggggtaatttttaggtcaaaattgaccctagatcatccatctaacaagaagaagaa 62  Q
    |||| |||| |||||| ||||||||||||||||| ||||||| ||| | |||||||||||    
T  17543913 tcggagggtgattttttggtcaaaattgaccctaaatcatccctctgaaaagaagaagaa 17543854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 179 - 230
Target Start/End: Original strand, 23457816 - 23457867
Alignment:
Q  179 tattttgattaacaaaatgaacaatcaaaaactattataaaacttcgataca 230  Q
    |||||||||||||||| || |||||||| ||||||| ||||| |||||||||    
T  23457816 tattttgattaacaaagtgcacaatcaataactattttaaaatttcgataca 23457867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 284 - 335
Target Start/End: Original strand, 23457816 - 23457867
Alignment:
Q  284 tattttgattaacaaaatgaataatcaaaaactattataaaatttcgataca 335  Q
    |||||||||||||||| || | |||||| ||||||| |||||||||||||||    
T  23457816 tattttgattaacaaagtgcacaatcaataactattttaaaatttcgataca 23457867  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 7 - 59
Target Start/End: Complemental strand, 10574400 - 10574348
Alignment:
Q  7 ggggtaatttttaggtcaaaattgaccctagatcatccatctaacaagaagaa 59  Q
    ||||| ||||||  |||||||||||||||| |||| |||||||| ||||||||    
T  10574400 ggggtgatttttgagtcaaaattgaccctaaatcacccatctaaaaagaagaa 10574348  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 6 - 62
Target Start/End: Complemental strand, 11833038 - 11832982
Alignment:
Q  6 gggggtaatttttaggtcaaaattgaccctagatcatccatctaacaagaagaagaa 62  Q
    |||||| |||||| |||||||||||||| || ||||||| ||| | |||||||||||    
T  11833038 gggggtgatttttgggtcaaaattgaccataaatcatccctctgaaaagaagaagaa 11832982  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 7 - 59
Target Start/End: Complemental strand, 40761608 - 40761556
Alignment:
Q  7 ggggtaatttttaggtcaaaattgaccctagatcatccatctaacaagaagaa 59  Q
    ||||| |||||| ||||||||||||||||| ||||||| ||| | ||||||||    
T  40761608 ggggtgatttttgggtcaaaattgaccctaaatcatccctctgaaaagaagaa 40761556  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 280 - 352
Target Start/End: Original strand, 8234312 - 8234384
Alignment:
Q  280 agattattttgattaacaaaatgaataatcaaaaactattataaaatttcgatacaataaggattattgtaac 352  Q
    |||||||||||||||||| |||| | ||| |||||||||| |||||||| |||| | | ||||||||||||||    
T  8234312 agattattttgattaacagaatgcacaattaaaaactattttaaaattttgatatattgaggattattgtaac 8234384  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 15 - 62
Target Start/End: Complemental strand, 17347610 - 17347563
Alignment:
Q  15 ttttaggtcaaaattgaccctagatcatccatctaacaagaagaagaa 62  Q
    |||| ||||||||||||||||| ||||||||||| |||||||||||||    
T  17347610 tttttggtcaaaattgaccctaaatcatccatctgacaagaagaagaa 17347563  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 27534712 - 27534663
Alignment:
Q  13 atttttaggtcaaaattgaccctagatcatccatctaacaagaagaagaa 62  Q
    |||||| ||||||||||||||||| ||||||| ||| |||||||||||||    
T  27534712 atttttgggtcaaaattgaccctaaatcatccctctgacaagaagaagaa 27534663  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 62
Target Start/End: Original strand, 424393 - 424448
Alignment:
Q  7 ggggtaatttttaggtcaaaattgaccctagatcatccatctaacaagaagaagaa 62  Q
    ||||| |||||| ||||||||||||||||| |||| || ||| |||||||||||||    
T  424393 ggggtgatttttgggtcaaaattgaccctaaatcacccctctgacaagaagaagaa 424448  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 8 - 62
Target Start/End: Complemental strand, 20411591 - 20411537
Alignment:
Q  8 gggtaatttttaggtcaaaattgaccctagatcatccatctaacaagaagaagaa 62  Q
    |||| |||||| |||||||||||||| || |||| |||||||| |||||||||||    
T  20411591 gggtgatttttgggtcaaaattgaccataaatcacccatctaaaaagaagaagaa 20411537  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 7 - 61
Target Start/End: Complemental strand, 29205304 - 29205250
Alignment:
Q  7 ggggtaatttttaggtcaaaattgaccctagatcatccatctaacaagaagaaga 61  Q
    ||||| |||||| ||||||||||||||||| |||| || ||||| ||||||||||    
T  29205304 ggggtgatttttgggtcaaaattgaccctaaatcacccgtctaaaaagaagaaga 29205250  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 64
Target Start/End: Complemental strand, 14265303 - 14265246
Alignment:
Q  7 ggggtaatttttaggtcaaaattgaccctagatcatccatctaacaagaagaagaaaa 64  Q
    ||||| ||||||  |||||||||||||||| |||| |||||| |||||||||| ||||    
T  14265303 ggggtgatttttttgtcaaaattgaccctaaatcacccatctgacaagaagaaaaaaa 14265246  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 296 - 333
Target Start/End: Complemental strand, 25255945 - 25255908
Alignment:
Q  296 caaaatgaataatcaaaaactattataaaatttcgata 333  Q
    ||||||| |||||||||||||||| |||||||||||||    
T  25255945 caaaatgcataatcaaaaactattttaaaatttcgata 25255908  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 28678238 - 28678287
Alignment:
Q  13 atttttaggtcaaaattgaccctagatcatccatctaacaagaagaagaa 62  Q
    |||||| ||||||||||||||||| |||| || ||||| |||||||||||    
T  28678238 atttttgggtcaaaattgaccctaaatcacccctctaaaaagaagaagaa 28678287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 272 - 317
Target Start/End: Complemental strand, 35607262 - 35607217
Alignment:
Q  272 aacgtcatagattattttgattaacaaaatgaataatcaaaaacta 317  Q
    |||||||||||||||||||| |||| ||||| | ||||||||||||    
T  35607262 aacgtcatagattattttgactaacgaaatgcacaatcaaaaacta 35607217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 271 - 349
Target Start/End: Complemental strand, 29920537 - 29920458
Alignment:
Q  271 caacgtcatagattattttgattaacaaaatgaataatcaaaaactattataaaatttcgatacaat-aaggattattgt 349  Q
    |||| ||| |||||||||| ||||| |||||| |||||||||||||||| | |||||| |||||| | ||||||||||||    
T  29920537 caacatcagagattattttaattaataaaatgcataatcaaaaactattttgaaattttgatacattgaaggattattgt 29920458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 282 - 335
Target Start/End: Complemental strand, 9307337 - 9307284
Alignment:
Q  282 attattttgattaacaaaatgaataatcaaaaactattataaaatttcgataca 335  Q
    ||||||||||||||| || || ||||| |||||||||| |||||||| ||||||    
T  9307337 attattttgattaacgaagtgcataataaaaaactattttaaaattttgataca 9307284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 275 - 335
Target Start/End: Original strand, 10067713 - 10067773
Alignment:
Q  275 gtcatagattattttgattaacaaaatgaataatcaaaaactattataaaatttcgataca 335  Q
    |||| ||| ||||||||||||||||||  | ||||| | |||||| |||||||||||||||    
T  10067713 gtcagagactattttgattaacaaaatacacaatcagagactattttaaaatttcgataca 10067773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 7 - 70
Target Start/End: Original strand, 7771908 - 7771971
Alignment:
Q  7 ggggtaatttttaggtcaaaattgaccctagatcatccatctaacaagaagaagaaaatggtga 70  Q
    ||||| |||||| ||||||||||||||||| |||| || ||||| ||||||||||||| |||||    
T  7771908 ggggtgatttttgggtcaaaattgaccctaaatcacccctctaaaaagaagaagaaaagggtga 7771971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 88
Target Start/End: Complemental strand, 27241083 - 27241002
Alignment:
Q  7 ggggtaatttttaggtcaaaattgaccctagatcatccatctaacaagaagaagaaaatggtgatggttagggtttgcgaag 88  Q
    ||||| |||||| |||||||||||| | || |||| |||||||| ||||||||||||  |||||  | ||||||||| ||||    
T  27241083 ggggtgatttttgggtcaaaattgatcataaatcacccatctaaaaagaagaagaaagaggtgacagatagggtttgagaag 27241002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 7 - 63
Target Start/End: Original strand, 17096344 - 17096400
Alignment:
Q  7 ggggtaatttttaggtcaaaattgaccctagatcatccatctaacaagaagaagaaa 63  Q
    ||||| ||| || ||||||||||||||||| |||| || ||| ||||||||||||||    
T  17096344 ggggtgattattgggtcaaaattgaccctaaatcacccctctgacaagaagaagaaa 17096400  T

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Target: scaffold0536 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 7 - 88
Target Start/End: Complemental strand, 2919 - 2838
Alignment:
Q  7 ggggtaatttttaggtcaaaattgaccctagatcatccatctaacaagaagaagaaaatggtgatggttagggtttgcgaag 88  Q
    ||||| ||| || ||||||||||||||||| |||| || ||||||||||||||||||  ||||| |  ||||||||| ||||    
T  2919 ggggtgattattgggtcaaaattgaccctaaatcacccctctaacaagaagaagaaaggggtgacgactagggtttgagaag 2838  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000008; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 24825662 - 24825613
Alignment:
Q  13 atttttaggtcaaaattgaccctagatcatccatctaacaagaagaagaa 62  Q
    ||||||||||||||||||| |||| |||| || |||||||||||||||||    
T  24825662 atttttaggtcaaaattgatcctaaatcacccctctaacaagaagaagaa 24825613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 88
Target Start/End: Original strand, 478119 - 478194
Alignment:
Q  13 atttttaggtcaaaattgaccctagatcatccatctaacaagaagaagaaaatggtgatggttagggtttgcgaag 88  Q
    |||||| |||||||||||||| || |||| || ||||| ||||||||||||  ||||| || ||||||||| ||||    
T  478119 atttttgggtcaaaattgaccataaatcacccctctaaaaagaagaagaaaggggtgacggctagggtttgagaag 478194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 62
Target Start/End: Complemental strand, 26674391 - 26674336
Alignment:
Q  7 ggggtaatttttaggtcaaaattgaccctagatcatccatctaacaagaagaagaa 62  Q
    ||||| ||||||||||||||||||| |||| |||| |||||| | |||||||||||    
T  26674391 ggggtgatttttaggtcaaaattgatcctaaatcacccatctgaaaagaagaagaa 26674336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 6911693 - 6911644
Alignment:
Q  13 atttttaggtcaaaattgaccctagatcatccatctaacaagaagaagaa 62  Q
    |||||| | ||||||||||||||| |||| || |||||||||||||||||    
T  6911693 atttttggatcaaaattgaccctaaatcacccctctaacaagaagaagaa 6911644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 284 - 328
Target Start/End: Complemental strand, 8755891 - 8755847
Alignment:
Q  284 tattttgattaacaaaatgaataatcaaaaactattataaaattt 328  Q
    |||||||| |||||||||| | |||||||||||||| ||||||||    
T  8755891 tattttgactaacaaaatgcaaaatcaaaaactattttaaaattt 8755847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0312 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 62
Target Start/End: Complemental strand, 6156 - 6101
Alignment:
Q  7 ggggtaatttttaggtcaaaattgaccctagatcatccatctaacaagaagaagaa 62  Q
    ||||| |||||| ||||||||||||||||| |||| || ||| |||||||||||||    
T  6156 ggggtgatttttgggtcaaaattgaccctaaatcacccctctgacaagaagaagaa 6101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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