View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11745_low_233 (Length: 225)
Name: NF11745_low_233
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11745_low_233 |
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Alignment Details
Target: chr7 (Bit Score: 174; Significance: 9e-94; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 16 - 209
Target Start/End: Complemental strand, 9383066 - 9382873
Alignment:
| Q |
16 |
cacatgttaggtccccttctccaccaatccttcgaccgcctctcccaaaaatacggaccaatattttctcttaactttggttccgttctctgcgttgttg |
115 |
Q |
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| T |
9383066 |
cacatgttaggtccccttctccaccactccttcgaccgcctctcccaaaaatacggaccaatattttcacttaactttggttccgtcctctgcgttgttg |
9382967 |
T |
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| Q |
116 |
catccactccccactacgcaaaacaaatccttcaaatcaacgaacatgcctttaactgtcgtaatgaatcaactgcaattaaacgcctcaccta |
209 |
Q |
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| T |
9382966 |
catccactcctcactacgcaaaacaaatccttcaaatcaacgaacatgcctttaattgtcgtaatgaatcaactgcaattaaacgcctcaccta |
9382873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 16 - 211
Target Start/End: Complemental strand, 9400535 - 9400340
Alignment:
| Q |
16 |
cacatgttaggtccccttctccaccaatccttcgaccgcctctcccaaaaatacggaccaatattttctcttaactttggttccgttctctgcgttgttg |
115 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |
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| T |
9400535 |
cacatgttaggtccccttctccaccactccttcgaccgcctctcccaaaaatacggaccaatattttcacttaactttggttccgtcctctgcgttgttg |
9400436 |
T |
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| Q |
116 |
catccactccccactacgcaaaacaaatccttcaaatcaacgaacatgcctttaactgtcgtaatgaatcaactgcaattaaacgcctcacctatg |
211 |
Q |
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| T |
9400435 |
catccactcctcactacgcaaaacaaatccttcaaatcaacgaacacgcctttaattgtcgtaatgaatcaactgcaattaaacgcctcacctatg |
9400340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 169
Target Start/End: Original strand, 23243219 - 23243324
Alignment:
| Q |
64 |
aaatacggaccaatattttctcttaactttggttccgttctctgcgttgttgcatccactccccactacgcaaaacaaatccttcaaatcaacgaacatg |
163 |
Q |
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|||||||| ||| |||| |||||||| | |||||||| |||||||| | || ||||| || |||| ||| |||||| |||| ||||||||||||| | |
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| T |
23243219 |
aaatacggtccattattcactcttaacatgggttccgtcctctgcgtgatcgcttccacccctcactccgccaaacaattcctccaaatcaacgaactcg |
23243318 |
T |
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| Q |
164 |
ccttta |
169 |
Q |
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|||||| |
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| T |
23243319 |
ccttta |
23243324 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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