View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11745_low_235 (Length: 221)

Name: NF11745_low_235
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11745_low_235
NF11745_low_235
[»] chr2 (35 HSPs)
chr2 (24-221)||(24009228-24009412)
chr2 (122-221)||(20242669-20242768)
chr2 (124-221)||(2438661-2438758)
chr2 (58-184)||(30404829-30404955)
chr2 (122-221)||(36096306-36096416)
chr2 (61-221)||(18840955-18841115)
chr2 (138-221)||(28596503-28596586)
chr2 (124-210)||(12224243-12224329)
chr2 (155-221)||(37419805-37419871)
chr2 (124-221)||(15972893-15972990)
chr2 (155-221)||(26769573-26769639)
chr2 (155-221)||(34784913-34784979)
chr2 (62-221)||(38117101-38117261)
chr2 (138-221)||(34006932-34007016)
chr2 (141-221)||(34993924-34994004)
chr2 (124-215)||(5040754-5040845)
chr2 (125-204)||(5367213-5367292)
chr2 (61-221)||(37558939-37559094)
chr2 (158-221)||(41843500-41843563)
chr2 (167-221)||(18054718-18054772)
chr2 (155-221)||(19942316-19942382)
chr2 (159-221)||(30717461-30717523)
chr2 (155-221)||(35056930-35056996)
chr2 (122-219)||(37411188-37411285)
chr2 (157-221)||(11223795-11223858)
chr2 (158-221)||(42511324-42511387)
chr2 (122-197)||(43585971-43586046)
chr2 (77-163)||(18054803-18054890)
chr2 (138-216)||(21624301-21624374)
chr2 (79-153)||(21616737-21616811)
chr2 (124-169)||(34691799-34691844)
chr2 (124-169)||(34714211-34714256)
chr2 (76-165)||(23717998-23718087)
chr2 (76-165)||(24105670-24105759)
chr2 (157-221)||(44860384-44860448)
[»] chr1 (45 HSPs)
chr1 (77-221)||(10577677-10577821)
chr1 (155-221)||(25934678-25934744)
chr1 (61-218)||(5898211-5898368)
chr1 (61-221)||(36878417-36878583)
chr1 (124-221)||(37598852-37598948)
chr1 (155-221)||(32461395-32461461)
chr1 (124-221)||(18337349-18337446)
chr1 (124-221)||(42359391-42359488)
chr1 (126-221)||(12918967-12919062)
chr1 (122-221)||(30749858-30749957)
chr1 (122-221)||(30771309-30771408)
chr1 (122-209)||(40181889-40181976)
chr1 (158-221)||(41597412-41597475)
chr1 (62-221)||(46348325-46348479)
chr1 (124-221)||(51410045-51410142)
chr1 (76-221)||(2896063-2896208)
chr1 (124-221)||(1486646-1486748)
chr1 (123-221)||(29163323-29163421)
chr1 (155-221)||(47989559-47989625)
chr1 (124-221)||(22515829-22515926)
chr1 (124-221)||(40258875-40258972)
chr1 (122-170)||(14332635-14332683)
chr1 (122-221)||(7918156-7918252)
chr1 (124-221)||(52903269-52903363)
chr1 (159-221)||(6414933-6414995)
chr1 (155-221)||(40917811-40917877)
chr1 (124-221)||(1815277-1815374)
chr1 (61-114)||(14359570-14359623)
chr1 (122-221)||(27965942-27966039)
chr1 (122-169)||(1864874-1864921)
chr1 (158-221)||(9828109-9828172)
chr1 (124-221)||(16297223-16297322)
chr1 (158-221)||(31015091-31015154)
chr1 (158-221)||(36906062-36906124)
chr1 (124-210)||(18190061-18190147)
chr1 (160-221)||(6427531-6427592)
chr1 (61-114)||(9629949-9630002)
chr1 (61-153)||(25934572-25934665)
chr1 (122-163)||(34371731-34371772)
chr1 (122-163)||(44482248-44482289)
chr1 (61-114)||(48450636-48450689)
chr1 (159-211)||(6612112-6612164)
chr1 (125-169)||(13436479-13436523)
chr1 (60-100)||(17778513-17778553)
chr1 (139-219)||(39130711-39130791)
[»] chr3 (38 HSPs)
chr3 (122-221)||(13845467-13845566)
chr3 (122-221)||(35222956-35223055)
chr3 (122-204)||(2941576-2941658)
chr3 (124-221)||(40993277-40993374)
chr3 (124-221)||(20503485-20503582)
chr3 (124-221)||(55401095-55401192)
chr3 (124-221)||(28918021-28918120)
chr3 (61-221)||(26492147-26492307)
chr3 (122-221)||(8789490-8789591)
chr3 (124-221)||(18426969-18427066)
chr3 (65-221)||(10954911-10955072)
chr3 (122-163)||(14028025-14028066)
chr3 (77-221)||(24204983-24205127)
chr3 (158-221)||(14216957-14217020)
chr3 (158-221)||(14223086-14223149)
chr3 (155-221)||(4987222-4987288)
chr3 (155-221)||(14209175-14209241)
chr3 (122-168)||(25093520-25093566)
chr3 (175-221)||(37077441-37077487)
chr3 (155-221)||(41961581-41961647)
chr3 (124-169)||(7928470-7928515)
chr3 (128-216)||(3631708-3631796)
chr3 (158-221)||(15864886-15864949)
chr3 (165-221)||(15999952-16000008)
chr3 (157-217)||(25064971-25065031)
chr3 (126-221)||(25775531-25775624)
chr3 (59-95)||(40993398-40993434)
chr3 (122-221)||(4466542-4466641)
chr3 (158-221)||(10690194-10690257)
chr3 (158-221)||(27505305-27505368)
chr3 (140-210)||(7171537-7171607)
chr3 (78-169)||(8383231-8383322)
chr3 (123-169)||(11507469-11507515)
chr3 (159-221)||(34185054-34185116)
chr3 (124-221)||(51206295-51206392)
chr3 (122-221)||(11251996-11252093)
chr3 (173-221)||(25074864-25074912)
chr3 (157-221)||(29508503-29508567)
[»] chr8 (32 HSPs)
chr8 (123-221)||(43737753-43737851)
chr8 (124-221)||(3951478-3951575)
chr8 (155-221)||(34450963-34451029)
chr8 (122-221)||(3025569-3025668)
chr8 (138-221)||(926730-926813)
chr8 (158-221)||(26902106-26902169)
chr8 (122-217)||(33405330-33405425)
chr8 (155-221)||(29510235-29510301)
chr8 (122-221)||(20679337-20679436)
chr8 (62-178)||(20873027-20873143)
chr8 (61-221)||(36450696-36450851)
chr8 (155-221)||(29447041-29447107)
chr8 (122-220)||(40332209-40332307)
chr8 (122-221)||(14134717-14134816)
chr8 (158-221)||(16641911-16641974)
chr8 (155-221)||(22652038-22652104)
chr8 (84-218)||(31109463-31109597)
chr8 (124-221)||(31557016-31557113)
chr8 (122-170)||(4786331-4786379)
chr8 (155-219)||(5813643-5813707)
chr8 (87-168)||(34897068-34897149)
chr8 (141-215)||(126295-126369)
chr8 (122-168)||(13844591-13844637)
chr8 (187-221)||(34127174-34127208)
chr8 (123-153)||(34451047-34451077)
chr8 (122-221)||(37283757-37283851)
chr8 (124-221)||(18407739-18407836)
chr8 (122-163)||(26902175-26902216)
chr8 (122-171)||(31236569-31236618)
chr8 (168-221)||(33389297-33389350)
chr8 (138-210)||(8293859-8293931)
chr8 (157-221)||(15816060-15816124)
[»] chr6 (36 HSPs)
chr6 (64-221)||(13789114-13789271)
chr6 (64-221)||(13797733-13797890)
chr6 (61-221)||(34595090-34595251)
chr6 (122-221)||(18367854-18367964)
chr6 (79-221)||(9658854-9658997)
chr6 (158-221)||(12696383-12696446)
chr6 (122-221)||(16488521-16488631)
chr6 (124-221)||(28152118-28152215)
chr6 (122-221)||(7265535-7265634)
chr6 (158-221)||(17327592-17327655)
chr6 (122-220)||(7996325-7996419)
chr6 (122-220)||(8022382-8022476)
chr6 (76-221)||(8776910-8777060)
chr6 (139-220)||(32978842-32978923)
chr6 (84-221)||(17841531-17841668)
chr6 (124-221)||(33001231-33001328)
chr6 (177-221)||(34446644-34446688)
chr6 (122-221)||(7377997-7378096)
chr6 (122-221)||(13360315-13360413)
chr6 (122-221)||(13364647-13364746)
chr6 (158-221)||(31384984-31385047)
chr6 (155-221)||(8365450-8365516)
chr6 (155-221)||(10339056-10339122)
chr6 (124-221)||(28715315-28715412)
chr6 (123-175)||(7740660-7740712)
chr6 (122-170)||(19040370-19040418)
chr6 (141-180)||(30851637-30851676)
chr6 (174-221)||(31959220-31959267)
chr6 (122-221)||(32511608-32511707)
chr6 (155-221)||(4877994-4878059)
chr6 (174-220)||(8389411-8389457)
chr6 (155-221)||(9107301-9107367)
chr6 (155-221)||(16766759-16766825)
chr6 (122-163)||(9025494-9025535)
chr6 (77-163)||(9027151-9027237)
chr6 (61-163)||(10770674-10770776)
[»] chr4 (34 HSPs)
chr4 (77-221)||(5414103-5414258)
chr4 (77-221)||(23292928-23293072)
chr4 (59-218)||(49430980-49431140)
chr4 (122-221)||(19097837-19097935)
chr4 (122-221)||(35161054-35161153)
chr4 (155-221)||(12323971-12324037)
chr4 (157-221)||(848015-848079)
chr4 (62-191)||(12797310-12797438)
chr4 (158-221)||(3947703-3947766)
chr4 (139-221)||(2361917-2361999)
chr4 (155-221)||(30982809-30982875)
chr4 (124-221)||(16073414-16073511)
chr4 (124-221)||(28964190-28964287)
chr4 (122-221)||(8423660-8423759)
chr4 (122-196)||(9996858-9996932)
chr4 (163-221)||(19482738-19482796)
chr4 (155-221)||(24613632-24613698)
chr4 (124-178)||(54580008-54580062)
chr4 (140-221)||(12895216-12895297)
chr4 (124-221)||(34306746-34306843)
chr4 (124-221)||(715547-715646)
chr4 (124-221)||(752873-752972)
chr4 (161-221)||(46083922-46083982)
chr4 (155-221)||(53381532-53381599)
chr4 (122-184)||(8402721-8402783)
chr4 (58-103)||(29205405-29205451)
chr4 (124-170)||(40179629-40179675)
chr4 (179-221)||(40784028-40784070)
chr4 (124-221)||(4157169-4157266)
chr4 (132-173)||(20950417-20950458)
chr4 (124-221)||(35157927-35158024)
chr4 (124-181)||(36509074-36509131)
chr4 (172-220)||(28084592-28084640)
chr4 (124-192)||(29205464-29205532)
[»] chr5 (30 HSPs)
chr5 (140-219)||(30098982-30099061)
chr5 (84-221)||(6401478-6401626)
chr5 (124-221)||(21576687-21576784)
chr5 (138-210)||(26312803-26312875)
chr5 (122-221)||(42029770-42029869)
chr5 (122-221)||(21814279-21814389)
chr5 (77-221)||(21190998-21191142)
chr5 (122-221)||(30502330-30502429)
chr5 (122-221)||(30542673-30542772)
chr5 (124-221)||(43564901-43564998)
chr5 (122-221)||(28588616-28588715)
chr5 (122-218)||(21194068-21194164)
chr5 (148-220)||(39268541-39268613)
chr5 (122-221)||(17123066-17123164)
chr5 (158-221)||(30098391-30098454)
chr5 (155-221)||(21522812-21522878)
chr5 (155-221)||(21533378-21533444)
chr5 (155-221)||(21542092-21542158)
chr5 (122-221)||(18421779-18421882)
chr5 (159-220)||(19452998-19453059)
chr5 (127-219)||(4105282-4105374)
chr5 (122-221)||(27932253-27932352)
chr5 (158-221)||(31084382-31084445)
chr5 (158-221)||(43001859-43001922)
chr5 (141-191)||(23012380-23012430)
chr5 (155-221)||(39698603-39698669)
chr5 (122-163)||(3966521-3966562)
chr5 (124-221)||(42893380-42893477)
chr5 (122-221)||(14873535-14873639)
chr5 (141-221)||(32630677-32630757)
[»] scaffold0652 (1 HSPs)
scaffold0652 (124-221)||(404-501)
[»] chr7 (29 HSPs)
chr7 (122-221)||(18212975-18213074)
chr7 (122-220)||(39138462-39138560)
chr7 (122-221)||(32287405-32287504)
chr7 (124-221)||(15680829-15680926)
chr7 (158-221)||(5409773-5409836)
chr7 (158-221)||(9778559-9778622)
chr7 (122-221)||(20549809-20549908)
chr7 (122-221)||(21880170-21880269)
chr7 (78-221)||(43027406-43027554)
chr7 (79-221)||(598183-598325)
chr7 (122-212)||(12278853-12278943)
chr7 (155-221)||(24339704-24339770)
chr7 (122-221)||(1401043-1401140)
chr7 (122-166)||(9482952-9482996)
chr7 (57-101)||(12289066-12289110)
chr7 (158-221)||(32093956-32094020)
chr7 (62-150)||(43249950-43250039)
chr7 (59-162)||(19206004-19206108)
chr7 (122-192)||(5835265-5835335)
chr7 (139-221)||(21864843-21864925)
chr7 (155-221)||(25822717-25822783)
chr7 (122-212)||(27093364-27093454)
chr7 (122-212)||(27184847-27184937)
chr7 (160-221)||(17852056-17852117)
chr7 (122-163)||(22602710-22602751)
chr7 (63-108)||(28401102-28401147)
chr7 (180-220)||(8842282-8842322)
chr7 (56-92)||(11700763-11700799)
chr7 (70-114)||(24105644-24105688)
[»] scaffold0306 (1 HSPs)
scaffold0306 (155-221)||(13457-13523)
[»] scaffold0152 (1 HSPs)
scaffold0152 (155-221)||(21804-21870)
[»] scaffold0623 (1 HSPs)
scaffold0623 (122-221)||(5927-6037)
[»] scaffold0116 (1 HSPs)
scaffold0116 (77-163)||(9871-9957)
[»] scaffold0050 (1 HSPs)
scaffold0050 (124-220)||(70298-70394)
[»] scaffold0003 (3 HSPs)
scaffold0003 (157-221)||(241658-241722)
scaffold0003 (55-114)||(241544-241604)
scaffold0003 (173-221)||(236916-236964)
[»] scaffold0361 (1 HSPs)
scaffold0361 (124-221)||(14550-14644)
[»] scaffold0083 (1 HSPs)
scaffold0083 (138-221)||(45472-45555)
[»] scaffold0053 (1 HSPs)
scaffold0053 (77-221)||(8771-8915)
[»] scaffold0450 (1 HSPs)
scaffold0450 (155-221)||(8566-8632)
[»] scaffold0793 (1 HSPs)
scaffold0793 (124-221)||(4823-4922)
[»] scaffold0380 (1 HSPs)
scaffold0380 (165-221)||(8662-8718)
[»] scaffold0004 (1 HSPs)
scaffold0004 (157-221)||(92875-92939)
[»] scaffold0279 (1 HSPs)
scaffold0279 (61-100)||(17735-17774)
[»] scaffold0475 (1 HSPs)
scaffold0475 (139-221)||(3343-3425)
[»] scaffold0019 (1 HSPs)
scaffold0019 (155-221)||(71787-71853)
[»] scaffold0512 (1 HSPs)
scaffold0512 (141-221)||(4978-5058)


Alignment Details
Target: chr2 (Bit Score: 96; Significance: 3e-47; HSPs: 35)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 24 - 221
Target Start/End: Original strand, 24009228 - 24009412
Alignment:
Q  24 acatcacaaaatgataaaaaggaaaactaactacaatctatgaagcacggatacggacaagacacggacaccgacacggcgacacggctaannnnnnnag 123  Q
    |||| |||||||||||||| |||||||||| ||||||||||||||||||||||||||||            |||||||||||||| |||||       ||    
T  24009228 acataacaaaatgataaaatggaaaactaagtacaatctatgaagcacggatacggaca------------cgacacggcgacacagctaatttttttag 24009315  T
Q  124 aaaatcacaaaatgcagtgtaattatatgtctcggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    |||||||||||||||||||||| | ||||| |||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  24009316 aaaatcacaaaatgcagtgtaaat-tatgtgtcggtgtcggacacgacacgtgtctgacacggggacacgccttatccaaggagtgtccgtgcttcat 24009412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 122 - 221
Target Start/End: Complemental strand, 20242768 - 20242669
Alignment:
Q  122 agaaaatcacaaaatgcagtgtaattatatgtctcggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    ||||||||||| ||| |||||||||||||||| |||||||||||||| | |||||||||||||| |||||| |||||||| | ||||||| |||||||||    
T  20242768 agaaaatcacataattcagtgtaattatatgtgtcggtgtcggacacaacacgtgtctgacacgaggacacgccttatccgaagagtgtctgtgcttcat 20242669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 124 - 221
Target Start/End: Complemental strand, 2438758 - 2438661
Alignment:
Q  124 aaaatcacaaaatgcagtgtaattatatgtctcggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    ||||||||| ||| ||||||||||| | || |||||||||||||||| || |||| ||||| ||||||| ||| |||| |||||||||||||||||||    
T  2438758 aaaatcacataattcagtgtaattacaagtgtcggtgtcggacacgacacatgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcat 2438661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 58 - 184
Target Start/End: Complemental strand, 30404955 - 30404829
Alignment:
Q  58 aatctatgaagcacggatacggacaagacacggacaccgacacggcgacacggctaannnnnnnagaaaatcacaaaatgcagtgtaattatatgtctcg 157  Q
    ||||||||||||||||||||||||| ||||||||||| |||||| |||||||| |||       | ||||||||| ||| ||||||||||| | || |||    
T  30404955 aatctatgaagcacggatacggacatgacacggacactgacacgccgacacggttaataatttgaaaaaatcacataattcagtgtaattacaagtgtcg 30404856  T
Q  158 gtgtcggacacgatacgtgtctgacac 184  Q
    | ||||||||||| || |||| |||||    
T  30404855 gcgtcggacacgacacatgtccgacac 30404829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 122 - 221
Target Start/End: Complemental strand, 36096416 - 36096306
Alignment:
Q  122 agaaaatcacaaaatgcagtgtaattatatgtctcggtgtcg-----------gacacgatacgtgtctgacacggggacacaccttatccaaggagtgt 210  Q
    |||||||||||||||||||||||||||||| | |||||||||           ||||||| ||||||||||||||||||||| ||||| |||| ||||||    
T  36096416 agaaaatcacaaaatgcagtgtaattatatttgtcggtgtcgtgtcgatgtcggacacgacacgtgtctgacacggggacacgccttaaccaaagagtgt 36096317  T
Q  211 ccgtgcttcat 221  Q
    |||||||||||    
T  36096316 ccgtgcttcat 36096306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 61 - 221
Target Start/End: Complemental strand, 18841115 - 18840955
Alignment:
Q  61 ctatgaagcacggatacggacaagacacggacaccgacacggcgacacggctaannnnnnnagaaaatcacaaaatgcagtgtaattatatgtctcggtg 160  Q
    |||||||||||| ||||||||| |||| |||||| ||||||  |||||  ||||       | ||||| ||| |||  |||||||||| | || ||||||    
T  18841115 ctatgaagcacgtatacggacacgacatggacactgacacgctgacacaactaataatttgaaaaaattacataattaagtgtaattacaagtgtcggtg 18841016  T
Q  161 tcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    || ||||||| || |||| ||||| ||||||||||| |||| |||||||||||||||||||    
T  18841015 tcagacacgacacatgtccgacaccgggacacacctaatccgaggagtgtccgtgcttcat 18840955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 138 - 221
Target Start/End: Original strand, 28596503 - 28596586
Alignment:
Q  138 cagtgtaattatatgtctcggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    ||||||||||||| || |||||||||||||||| ||||||| |||||  |||||| ||| |||| |||||||||||||||||||    
T  28596503 cagtgtaattataagtgtcggtgtcggacacgacacgtgtccgacactcggacactcctaatccgaggagtgtccgtgcttcat 28596586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 124 - 210
Target Start/End: Original strand, 12224243 - 12224329
Alignment:
Q  124 aaaatcacaaaatgcagtgtaattatatgtctcggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgt 210  Q
    |||||| || ||| || |||||||| | || |||||||||||||||||||||||| ||||| ||||||| ||| |||||||||||||    
T  12224243 aaaatcccataatccaatgtaattacaagtgtcggtgtcggacacgatacgtgtccgacactgggacacgcctaatccaaggagtgt 12224329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 155 - 221
Target Start/End: Original strand, 37419805 - 37419871
Alignment:
Q  155 tcggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    ||||||||||||||||| |||||| ||||| ||||||| ||| |||| |||||||||||||||||||    
T  37419805 tcggtgtcggacacgatgcgtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcat 37419871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 124 - 221
Target Start/End: Original strand, 15972893 - 15972990
Alignment:
Q  124 aaaatcacaaaatgcagtgtaattatatgtctcggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    ||||| ||| ||| ||||||||||| | || |||||||||||||||| ||||||| ||| | ||||||||||| |||| | || ||||||||||||||    
T  15972893 aaaattacacaattcagtgtaattacaagtgtcggtgtcggacacgacacgtgtccgacgccgggacacacctaatccgaagaatgtccgtgcttcat 15972990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 155 - 221
Target Start/End: Original strand, 26769573 - 26769639
Alignment:
Q  155 tcggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    ||||| |||||||||| ||||||| ||||| ||||||| ||| |||| |||||||||||||||||||    
T  26769573 tcggtatcggacacgacacgtgtccgacactgggacacgcctaatccgaggagtgtccgtgcttcat 26769639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 155 - 221
Target Start/End: Complemental strand, 34784979 - 34784913
Alignment:
Q  155 tcggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    ||||| |||||||||| || |||||||||||||||||| |||||| | ||||||||| |||||||||    
T  34784979 tcggtatcggacacgacacctgtctgacacggggacacgccttattcgaggagtgtctgtgcttcat 34784913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 62 - 221
Target Start/End: Complemental strand, 38117261 - 38117101
Alignment:
Q  62 tatgaagcacggatacggacaa--gacacggacaccgacacggcgacacggctaannnnnnnagaaaatcacaaaatgcagtgtaattatatgtctcggt 159  Q
    |||||||||||||||||||||   |||||| |||| |||||| |||||| |||||       | ||||||||| | | | ||||||||| | || | |||    
T  38117261 tatgaagcacggatacggacaccggacacg-acactgacacgccgacacagctaataatttgaaaaaatcacatacttcggtgtaattacaagtgttggt 38117163  T
Q  160 gtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    ||||||||| | ||||||| ||||| ||||||| ||| |||| ||| |||||||||||||||    
T  38117162 gtcggacacaacacgtgtccgacaccgggacacgcctaatccgaggggtgtccgtgcttcat 38117101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 138 - 221
Target Start/End: Complemental strand, 34007016 - 34006932
Alignment:
Q  138 cagtgtaattatatgtctcggtgtcggacacg-atacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    ||||||||| ||| || ||||||| ||||||  || |||||||||||| || |||||||| || |||||||||||||||||||||    
T  34007016 cagtgtaatcataggtgtcggtgtgggacacctattcgtgtctgacaccggaacacacctaattcaaggagtgtccgtgcttcat 34006932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 141 - 221
Target Start/End: Complemental strand, 34994004 - 34993924
Alignment:
Q  141 tgtaattatatgtctcggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    ||||||||||||| || |||||| |||||| | ||||| ||||| ||||||| ||| || |||||||||| ||||||||||    
T  34994004 tgtaattatatgtgtcagtgtcgaacacgacatgtgtccgacactgggacacgcctaattcaaggagtgttcgtgcttcat 34993924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 124 - 215
Target Start/End: Original strand, 5040754 - 5040845
Alignment:
Q  124 aaaatcacaaaatgcagtgtaattatatgtctcggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtg 215  Q
    ||||||||| ||| || |||||||| | || |||||||||||||||| | ||||| ||| | ||||||| |||  |||||||||||||||||    
T  5040754 aaaatcacataattcaatgtaattacaagtgtcggtgtcggacacgacatgtgtccgacgccgggacacgcctagtccaaggagtgtccgtg 5040845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 125 - 204
Target Start/End: Original strand, 5367213 - 5367292
Alignment:
Q  125 aaatcacaaaatgcagtgtaattatatgtctcggtgtcggacacgatacgtgtctgacacggggacacaccttatccaag 204  Q
    |||||||| ||| |||||||||||||||| |||||||||||||||| || | || ||| | ||||||| ||| |||||||    
T  5367213 aaatcacataattcagtgtaattatatgtgtcggtgtcggacacgacacatatccgactccgggacacgcctaatccaag 5367292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 61 - 221
Target Start/End: Original strand, 37558939 - 37559094
Alignment:
Q  61 ctatgaagcacggatacggacaagacacggacaccgacacggcgacacggctaannnnnnnagaaaatcacaaaatgcagtgtaattatatgtctcggtg 160  Q
    ||||||||||||||||||||||     ||||||| |||||| |||||| |||||         ||||||||| ||| || |||||||| | || ||||||    
T  37558939 ctatgaagcacggatacggaca-----cggacactgacacgccgacacagctaataatttgtaaaaatcacataattcaatgtaattacaagtgtcggtg 37559033  T
Q  161 tcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    ||||||  || ||||||| ||||| || |||| | | |||| |||||||||||||||||||    
T  37559034 tcggacttgacacgtgtccgacaccggtacacgcttaatccgaggagtgtccgtgcttcat 37559094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 158 - 221
Target Start/End: Original strand, 41843500 - 41843563
Alignment:
Q  158 gtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    ||||||||| ||| ||||||| ||||||||||||| | |||||| ||||||||| |||||||||    
T  41843500 gtgtcggacgcgacacgtgtccgacacggggacacgctttatccgaggagtgtctgtgcttcat 41843563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 167 - 221
Target Start/End: Complemental strand, 18054772 - 18054718
Alignment:
Q  167 acgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    |||| |||||||||||||||  |||| ||||||||||||| ||||||||||||||    
T  18054772 acgacacgtgtctgacacggaaacacgccttatccaaggaatgtccgtgcttcat 18054718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 155 - 221
Target Start/End: Original strand, 19942316 - 19942382
Alignment:
Q  155 tcggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    |||||||||||||||  | ||||||||||| ||||||| ||| |||| |||||||||| ||||||||    
T  19942316 tcggtgtcggacacggcatgtgtctgacaccgggacacgcctaatccgaggagtgtccatgcttcat 19942382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 159 - 221
Target Start/End: Complemental strand, 30717523 - 30717461
Alignment:
Q  159 tgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    |||||||||||| ||||||  ||||| |||| || ||| ||||||||||||||||||||||||    
T  30717523 tgtcggacacgacacgtgttcgacactgggatacgcctaatccaaggagtgtccgtgcttcat 30717461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 155 - 221
Target Start/End: Original strand, 35056930 - 35056996
Alignment:
Q  155 tcggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    |||||||||||||||| ||||||| |||||||  |||| ||| |||  |||||||||||||||||||    
T  35056930 tcggtgtcggacacgacacgtgtccgacacggaaacacgcctaatctgaggagtgtccgtgcttcat 35056996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 122 - 219
Target Start/End: Complemental strand, 37411285 - 37411188
Alignment:
Q  122 agaaaatcacaaaatgcagtgtaattatatgtctcggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttc 219  Q
    ||||||||||| ||| |||||| ||||||||| ||| ||||| ||||||  |||||| ||||| ||||||| |||  ||| ||||||| | |||||||    
T  37411285 agaaaatcacataattcagtgtgattatatgtgtcgatgtcgaacacgacgcgtgtccgacactgggacacgcctagtccgaggagtgcctgtgcttc 37411188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 221
Target Start/End: Complemental strand, 11223858 - 11223795
Alignment:
Q  157 ggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    |||||||||||||| || |||||||||| ||||||| ||| |||  |||||||||||||||||||    
T  11223858 ggtgtcggacacgacac-tgtctgacaccgggacacgcctaatctgaggagtgtccgtgcttcat 11223795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 221
Target Start/End: Complemental strand, 42511387 - 42511324
Alignment:
Q  158 gtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    ||||||||||| | ||||||| ||||| |||||||  || |||| |||||||||||||||||||    
T  42511387 gtgtcggacacaacacgtgtccgacacagggacacggctaatccgaggagtgtccgtgcttcat 42511324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 197
Target Start/End: Complemental strand, 43586046 - 43585971
Alignment:
Q  122 agaaaatcacaaaatgcagtgtaattatatgtctcggtgtcggacacgatacgtgtctgacacggggacacacctt 197  Q
    ||||||| ||| ||| || |||||| | | || |||||||||||||||||||||||| |||||  |||||||||||    
T  43586046 agaaaatgacataattcaatgtaatcacaagtgtcggtgtcggacacgatacgtgtcagacacatggacacacctt 43585971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 163
Target Start/End: Complemental strand, 18054890 - 18054803
Alignment:
Q  77 cggacaagacacggacaccgacacggcgacacggctaannnnnnn-agaaaatcacaaaatgcagtgtaattatatgtctcggtgtcg 163  Q
    |||||| |||| ||||||||||||| |||||| |||||        ||||||||||||| |||||||||||||||||| | |||||||    
T  18054890 cggacacgacagggacaccgacacgtcgacacagctaattttttttagaaaatcacaaactgcagtgtaattatatgtgttggtgtcg 18054803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 216
Target Start/End: Original strand, 21624301 - 21624374
Alignment:
Q  138 cagtgtaattatatgtctcggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgc 216  Q
    ||||||||||| | || |||||||||||||||     |||| ||||  ||||||||||| |||||||||||||||||||    
T  21624301 cagtgtaattacaagtgtcggtgtcggacacg-----tgtccgacagcgggacacacctaatccaaggagtgtccgtgc 21624374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 79 - 153
Target Start/End: Original strand, 21616737 - 21616811
Alignment:
Q  79 gacaagacacggacaccgacacggcgacacggctaannnnnnnagaaaatcacaaaatgcagtgtaattatatgt 153  Q
    |||| ||||||||||| |||||| |||||| |||||       ||||||||||| ||| ||||||||||||||||    
T  21616737 gacacgacacggacacggacacgccgacaccgctaataatttgagaaaatcacataattcagtgtaattatatgt 21616811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 124 - 169
Target Start/End: Complemental strand, 34691844 - 34691799
Alignment:
Q  124 aaaatcacaaaatgcagtgtaattatatgtctcggtgtcggacacg 169  Q
    ||||||| | ||| |||||||||||||||| |||||||||||||||    
T  34691844 aaaatcatataattcagtgtaattatatgtgtcggtgtcggacacg 34691799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 124 - 169
Target Start/End: Complemental strand, 34714256 - 34714211
Alignment:
Q  124 aaaatcacaaaatgcagtgtaattatatgtctcggtgtcggacacg 169  Q
    ||||||| | ||| |||||||||||||||| |||||||||||||||    
T  34714256 aaaatcatataattcagtgtaattatatgtgtcggtgtcggacacg 34714211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 165
Target Start/End: Original strand, 23717998 - 23718087
Alignment:
Q  76 acggacaagacacggacaccgacacggcgacacggctaannnnnnnagaaaatcacaaaatgcagtgtaattatatgtctcggtgtcgga 165  Q
    ||||||| ||||||||||| |||||  |||||| |||||       ||||| ||||| ||| |||||||||||||||| |||||| ||||    
T  23717998 acggacatgacacggacactgacacaccgacaccgctaataatttgagaaagtcacataattcagtgtaattatatgtgtcggtgacgga 23718087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 165
Target Start/End: Original strand, 24105670 - 24105759
Alignment:
Q  76 acggacaagacacggacaccgacacggcgacacggctaannnnnnnagaaaatcacaaaatgcagtgtaattatatgtctcggtgtcgga 165  Q
    ||||||| ||||||||||| |||||  |||||| |||||       ||||| ||||| ||| |||||||||||||||| |||||| ||||    
T  24105670 acggacatgacacggacactgacacaccgacaccgctaataatttgagaaagtcacataattcagtgtaattatatgtgtcggtgacgga 24105759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 221
Target Start/End: Original strand, 44860384 - 44860448
Alignment:
Q  157 ggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    ||||| |||||||| | ||||| ||||  ||||||||||| || | |||||||||||||||||||    
T  44860384 ggtgttggacacgacatgtgtccgacatcgggacacacctaattcgaggagtgtccgtgcttcat 44860448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 88; Significance: 2e-42; HSPs: 45)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 77 - 221
Target Start/End: Complemental strand, 10577821 - 10577677
Alignment:
Q  77 cggacaagacacggacaccgacacggcgacacggctaannnnnnnagaaaatcacaaaatgcagtgtaattatatgtctcggtgtcggacacgatacgtg 176  Q
    |||||| |||||||||||||||||| |||||| |||||       |||||||||||||||||||||||||||||||| |||| | |||||||||  ||||    
T  10577821 cggacacgacacggacaccgacacgccgacacagctaatttttttagaaaatcacaaaatgcagtgtaattatatgtgtcgggggcggacacgacgcgtg 10577722  T
Q  177 tctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    |||||||||||||||| ||||||||||||||||||||||||||||    
T  10577721 tctgacacggggacacgccttatccaaggagtgtccgtgcttcat 10577677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 155 - 221
Target Start/End: Original strand, 25934678 - 25934744
Alignment:
Q  155 tcggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    |||||||||||||||| |||||||||||||||||| || ||||||||||||||||||||||||||||    
T  25934678 tcggtgtcggacacgacacgtgtctgacacggggatacgccttatccaaggagtgtccgtgcttcat 25934744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 61 - 218
Target Start/End: Complemental strand, 5898368 - 5898211
Alignment:
Q  61 ctatgaagcacggatacggacaagacacggacaccgacacggcgacacggctaannnnnnnagaaaatcacaaaatgcagtgtaattatatgtctcggtg 160  Q
    ||||| |||||||||||||||| ||||| ||||| || ||| |||||| |||||       | ||||||||| ||| |||||||||||||||  ||||||    
T  5898368 ctatgtagcacggatacggacatgacacagacactgagacgccgacaccgctaataatctgaaaaaatcacataattcagtgtaattatatgcgtcggtg 5898269  T
Q  161 tcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgctt 218  Q
    || ||||||| |||||||  |||| |||||||  || |||| ||||||||||||||||    
T  5898268 tcagacacgacacgtgtccaacaccgggacacgtctaatccgaggagtgtccgtgctt 5898211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 61 - 221
Target Start/End: Original strand, 36878417 - 36878583
Alignment:
Q  61 ctatgaagcacggatacggacaag-acacggacaccgacacggcgacacggctaannnnnnnagaaaatcacaaaatgcagtgtaattatatgtctcggt 159  Q
    |||||||||||||||||||||| | |||  ||||| |||||| |||||| |||||       ||||||||||| ||| ||||||||||||| || |||||    
T  36878417 ctatgaagcacggatacggacacggacatagacactgacacgccgacaccgctaataatttgagaaaatcacataattcagtgtaattataggtgtcggt 36878516  T
Q  160 gtcggacacgatacgtgtc-----tgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    ||| ||||||| || ||||      ||||||||||||| ||| |||| |||||||||||||||||||    
T  36878517 gtctgacacgaaacatgtccgacacgacacggggacacgcctaatcccaggagtgtccgtgcttcat 36878583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 124 - 221
Target Start/End: Original strand, 37598852 - 37598948
Alignment:
Q  124 aaaatcacaaaatgcagtgtaattatatgtctcggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    ||||||||||| | ||||||||||||| || |||||||||||||||| ||||||| ||||  ||||||| ||| |||| |||||||||||||||||||    
T  37598852 aaaatcacaaatt-cagtgtaattataagtgtcggtgtcggacacgacacgtgtccgacaatgggacacgcctaatccgaggagtgtccgtgcttcat 37598948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 155 - 221
Target Start/End: Complemental strand, 32461461 - 32461395
Alignment:
Q  155 tcggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    |||||||||||||||| ||||||||||||| ||||||| ||| ||||||| ||||||||||||||||    
T  32461461 tcggtgtcggacacgacacgtgtctgacactgggacacgcctaatccaagaagtgtccgtgcttcat 32461395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 124 - 221
Target Start/End: Original strand, 18337349 - 18337446
Alignment:
Q  124 aaaatcacaaaatgcagtgtaattatatgtctcggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    ||||||||| ||| ||||||||||| | || |||||||||||||| | ||||||| ||||| ||||||  ||| |||| |||||||||||||||||||    
T  18337349 aaaatcacataattcagtgtaattacaagtgtcggtgtcggacacaacacgtgtccgacactgggacatgcctgatccgaggagtgtccgtgcttcat 18337446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 124 - 221
Target Start/End: Complemental strand, 42359488 - 42359391
Alignment:
Q  124 aaaatcacaaaatgcagtgtaattatatgtctcggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    ||||||||||||| ||||||||||| | || ||||||||||||| ||   ||||| ||||| ||||||| ||| |||| |||||||||||||||||||    
T  42359488 aaaatcacaaaattcagtgtaattacaagtgtcggtgtcggacaagacgtgtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcat 42359391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 126 - 221
Target Start/End: Original strand, 12918967 - 12919062
Alignment:
Q  126 aatcacaaaatgcagtgtaattatatgtctcggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    ||||||| ||| || ||| ||||||||| | ||| |||||||||| |||||||||||||||||||||  ||||||| || ||||| ||||||||||    
T  12918967 aatcacataattcaatgtgattatatgtgttggtatcggacacgacacgtgtctgacacggggacacggcttatccgagaagtgttcgtgcttcat 12919062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 122 - 221
Target Start/End: Original strand, 30749858 - 30749957
Alignment:
Q  122 agaaaatcacaaaatgcagtgtaattatatgtctcggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    ||||||||||| ||| |||||||||||||||| |||||||||||||| | | |||| ||||||| ||| || | |||| | |||||||||| ||||||||    
T  30749858 agaaaatcacataattcagtgtaattatatgtgtcggtgtcggacaccacatgtgtttgacacgaggatacgcattattcgaggagtgtccatgcttcat 30749957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 122 - 221
Target Start/End: Original strand, 30771309 - 30771408
Alignment:
Q  122 agaaaatcacaaaatgcagtgtaattatatgtctcggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    ||||||||||| ||| |||||||||||||||| |||||||||||||| | | |||| ||||||| ||| || | |||| | |||||||||| ||||||||    
T  30771309 agaaaatcacataattcagtgtaattatatgtgtcggtgtcggacaccacatgtgtttgacacgaggatacgcattattcgaggagtgtccatgcttcat 30771408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 122 - 209
Target Start/End: Original strand, 40181889 - 40181976
Alignment:
Q  122 agaaaatcacaaaatgcagtgtaattatatgtctcggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtg 209  Q
    ||||||||||| ||| |||||||||||||||| |||||||||||||| | |||||||  |||| ||||||| ||| |||| |||||||    
T  40181889 agaaaatcacataattcagtgtaattatatgtatcggtgtcggacacaacacgtgtcctacaccgggacacgcctaatccgaggagtg 40181976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 158 - 221
Target Start/End: Complemental strand, 41597475 - 41597412
Alignment:
Q  158 gtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    ||||||||||||| |||||||||||||||||| || | |||||||||||||||| |||||||||    
T  41597475 gtgtcggacacgacacgtgtctgacacggggatacgctttatccaaggagtgtctgtgcttcat 41597412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 62 - 221
Target Start/End: Complemental strand, 46348479 - 46348325
Alignment:
Q  62 tatgaagcacggatacggacaagacacggacaccgacacggcgacacggctaannnnnnnagaaaatcacaaaatgcagtgtaattatatgtctcggtgt 161  Q
    |||||||||||||||||||||     ||||||| |||||| |||||| |||||       | ||||||| | |||  |||||||||| | || |||||||    
T  46348479 tatgaagcacggatacggaca-----cggacactgacacgccgacacagctaataatttgaaaaaatcatataatttagtgtaattacaagtgtcggtgt 46348385  T
Q  162 cggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    ||||||||| ||||||| ||||| | ||||| ||| |||| ||| |||||||||||||||    
T  46348384 cggacacgacacgtgtccgacaccgagacacgcctgatccgaggtgtgtccgtgcttcat 46348325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 124 - 221
Target Start/End: Original strand, 51410045 - 51410142
Alignment:
Q  124 aaaatcacaaaatgcagtgtaattatatgtctcggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    ||||||||| ||| ||||||||||| | || |||||||||||||||| |||| || ||||| | ||||| ||| ||||||||||| | ||||||||||    
T  51410045 aaaatcacataattcagtgtaattacaagtgtcggtgtcggacacgacacgtatccgacaccgagacacgcctaatccaaggagtattcgtgcttcat 51410142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 76 - 221
Target Start/End: Complemental strand, 2896208 - 2896063
Alignment:
Q  76 acggacaagacacggacaccgacacggcgacacggctaannnnnnnagaaaatcacaaaatgcagtgtaattatatgtctcggtgtcggacacgatacgt 175  Q
    |||||||  |||||||||| |||||| |||||| |||||       ||||||||||| ||| |||||||  ||||| | |||||||| ||||||| | ||    
T  2896208 acggacacaacacggacactgacacgccgacaccgctaataatttgagaaaatcacataattcagtgtagctatatatgtcggtgtcagacacgacatgt 2896109  T
Q  176 gtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    ||| || || ||||||||||| ||||||| ||||||| || |||||    
T  2896108 gtccgagaccgggacacacctaatccaagaagtgtccatgtttcat 2896063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 124 - 221
Target Start/End: Complemental strand, 1486748 - 1486646
Alignment:
Q  124 aaaatcacaaaatgcagtgtaattatatgtctcg-----gtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgctt 218  Q
    ||||||||| ||| ||||||||||||| || |||     ||||||||||||| ||||||| ||||| ||||||| ||| |||| ||||||||| ||||||    
T  1486748 aaaatcacataattcagtgtaattataagtgtcggtgtcgtgtcggacacgacacgtgtccgacaccgggacacgcctaatccgaggagtgtctgtgctt 1486649  T
Q  219 cat 221  Q
    |||    
T  1486648 cat 1486646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 123 - 221
Target Start/End: Complemental strand, 29163421 - 29163323
Alignment:
Q  123 gaaaatcacaaaatgcagtgtaattatatgtctcggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    |||||||||| ||| || | ||||||||||| |||||||||||||||| ||||| ||||||| |||||||  || |||  || ||||| ||||||||||    
T  29163421 gaaaatcacataattcaatttaattatatgtgtcggtgtcggacacgacacgtgcctgacaccgggacacggctaatcagagaagtgttcgtgcttcat 29163323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 155 - 221
Target Start/End: Original strand, 47989559 - 47989625
Alignment:
Q  155 tcggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    |||||||||||||||| || |||||||||  ||||||| ||| |||| |||||||||||||||||||    
T  47989559 tcggtgtcggacacgacacatgtctgacatcgggacacgcctaatccgaggagtgtccgtgcttcat 47989625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 124 - 221
Target Start/End: Complemental strand, 22515926 - 22515829
Alignment:
Q  124 aaaatcacaaaatgcagtgtaattatatgtctcggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    ||||||||| |||  |||||||||| | || |||||||||||||||| || | || ||||| | ||||| ||| |||| |||||||||||||||||||    
T  22515926 aaaatcacataatttagtgtaattacaagtgtcggtgtcggacacgacacatatccgacaccgagacacgcctaatccgaggagtgtccgtgcttcat 22515829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 124 - 221
Target Start/End: Complemental strand, 40258972 - 40258875
Alignment:
Q  124 aaaatcacaaaatgcagtgtaattatatgtctcggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    ||||||||| ||| ||||||||||| | || |||||||| ||||||| || |||| |||||  |||||| ||| |||| |||||||||| ||||||||    
T  40258972 aaaatcacataattcagtgtaattacaagtgtcggtgtcagacacgacacctgtccgacaccaggacacgcctaatccgaggagtgtccatgcttcat 40258875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 122 - 170
Target Start/End: Complemental strand, 14332683 - 14332635
Alignment:
Q  122 agaaaatcacaaaatgcagtgtaattatatgtctcggtgtcggacacga 170  Q
    ||||||||||| |||  ||||||||||||||||||||||||||||||||    
T  14332683 agaaaatcacataatttagtgtaattatatgtctcggtgtcggacacga 14332635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 122 - 221
Target Start/End: Complemental strand, 7918252 - 7918156
Alignment:
Q  122 agaaaatcacaaaatgcagtgtaattatatgtctcggtgtcg-gacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttca 220  Q
    ||||||||||| ||| |||||||||||||||| || |||||| | ||    |||| ||||||||  |||||||||| |||| ||||||||||||||||||    
T  7918252 agaaaatcacataattcagtgtaattatatgtgtcagtgtcgtgtca----acgtttctgacaccaggacacacctaatccgaggagtgtccgtgcttca 7918157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 124 - 221
Target Start/End: Original strand, 52903269 - 52903363
Alignment:
Q  124 aaaatcacaaaatgcagtgtaattatatgtctcggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    ||||||| | ||| |||||||||||||||| |||||||||||||||    ||||| ||||| |||||||  ||||| | | |||||||||||||||||    
T  52903269 aaaatcatataattcagtgtaattatatgtgtcggtgtcggacacg---tgtgtccgacaccgggacacggcttattcgaagagtgtccgtgcttcat 52903363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 159 - 221
Target Start/End: Complemental strand, 6414995 - 6414933
Alignment:
Q  159 tgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    |||||||||||| ||||||||||||| | ||||||  | |||| |||||||||||||||||||    
T  6414995 tgtcggacacgacacgtgtctgacaccgcgacacatttcatccgaggagtgtccgtgcttcat 6414933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 155 - 221
Target Start/End: Original strand, 40917811 - 40917877
Alignment:
Q  155 tcggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    ||||||| |||||||| ||||||| ||||| ||||||| ||| |||| |||| ||||||||||||||    
T  40917811 tcggtgttggacacgacacgtgtccgacaccgggacacgcctaatccgaggactgtccgtgcttcat 40917877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 124 - 221
Target Start/End: Original strand, 1815277 - 1815374
Alignment:
Q  124 aaaatcacaaaatgcagtgtaattatatgtctcggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    ||||||||| ||| ||||||||||| | || |||||||| ||||||| || |||| ||||| ||||||| ||| |||  ||||||| ||||| |||||    
T  1815277 aaaatcacataattcagtgtaattacaagtgtcggtgtccgacacgacacatgtccgacaccgggacacgcctaatctgaggagtgaccgtgattcat 1815374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 61 - 114
Target Start/End: Complemental strand, 14359623 - 14359570
Alignment:
Q  61 ctatgaagcacggatacggacaagacacggacaccgacacggcgacacggctaa 114  Q
    |||||||||||||||||||||| ||||| ||||| |||||| |||||| |||||    
T  14359623 ctatgaagcacggatacggacacgacacagacacggacacgccgacacagctaa 14359570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 122 - 221
Target Start/End: Complemental strand, 27966039 - 27965942
Alignment:
Q  122 agaaaatcacaaaatgcagtgtaattatatgtctcggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    |||||||||  |||| |||||||||||||||  || ||||| ||||||   |||| ||||||| ||||||| ||| |||| |||||||||| ||||||||    
T  27966039 agaaaatcattaaattcagtgtaattatatg--tccgtgtcagacacgcctcgtgcctgacaccgggacacgcctaatccgaggagtgtccatgcttcat 27965942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 169
Target Start/End: Complemental strand, 1864921 - 1864874
Alignment:
Q  122 agaaaatcacaaaatgcagtgtaattatatgtctcggtgtcggacacg 169  Q
    ||||||||||| ||| |||||||||||||||| ||||||| |||||||    
T  1864921 agaaaatcacataattcagtgtaattatatgtgtcggtgttggacacg 1864874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 221
Target Start/End: Original strand, 9828109 - 9828172
Alignment:
Q  158 gtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    ||||| ||||||| ||||||| ||||| |||||||  || |||| |||||||||||||||||||    
T  9828109 gtgtcagacacgacacgtgtccgacaccgggacacgtctaatccgaggagtgtccgtgcttcat 9828172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 124 - 221
Target Start/End: Complemental strand, 16297322 - 16297223
Alignment:
Q  124 aaaatcacaaaatgcagtgtaattata-tgtctcgg-tgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    ||||||||||||| ||||||||||| | ||||  || ||||||||||||   ||||| |||||  |||||| ||| |||| |||||||||||||||||||    
T  16297322 aaaatcacaaaattcagtgtaattacaatgtccggggtgtcggacacgacgtgtgtccgacaccaggacacgcctaatccgaggagtgtccgtgcttcat 16297223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 221
Target Start/End: Original strand, 31015091 - 31015154
Alignment:
Q  158 gtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    ||||||||||||| ||||||||||||  ||||||| ||| ||||||||||  || |||||||||    
T  31015091 gtgtcggacacgacacgtgtctgacatcgggacacgcctaatccaaggaggatcagtgcttcat 31015154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 221
Target Start/End: Original strand, 36906062 - 36906124
Alignment:
Q  158 gtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    |||||||||||||  || ||||||||| ||||||||||| || ||| |||||||||||||||||    
T  36906062 gtgtcggacacgacccgcgtctgacactgggacacacctaatgcaa-gagtgtccgtgcttcat 36906124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 210
Target Start/End: Complemental strand, 18190147 - 18190061
Alignment:
Q  124 aaaatcacaaaatgcagtgtaattatatgtctcggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgt 210  Q
    ||||| ||| ||| ||||||||||| | || ||| |||| ||||| | ||||||| ||||| ||||||||||| |||| ||||||||    
T  18190147 aaaattacataattcagtgtaattacaagtgtcgatgtcagacacaacacgtgtccgacaccgggacacacctaatccgaggagtgt 18190061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 160 - 221
Target Start/End: Original strand, 6427531 - 6427592
Alignment:
Q  160 gtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    ||||||||||| ||||||| ||||| ||||||| ||| |||  | |||||||||||||||||    
T  6427531 gtcggacacgacacgtgtccgacaccgggacacgcctaatctgatgagtgtccgtgcttcat 6427592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 61 - 114
Target Start/End: Complemental strand, 9630002 - 9629949
Alignment:
Q  61 ctatgaagcacggatacggacaagacacggacaccgacacggcgacacggctaa 114  Q
    ||||||||||||||||||| || |||| ||||||||||||  |||||| |||||    
T  9630002 ctatgaagcacggatacggccacgacatggacaccgacacatcgacaccgctaa 9629949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 61 - 153
Target Start/End: Original strand, 25934572 - 25934665
Alignment:
Q  61 ctatgaagcacggatacggacaag-acac-ggacaccgacacggcgacacggctaannnnnnnagaaaatcacaaaatgcagtgtaattatatgt 153  Q
    |||||||||||||||||||||| | |||| |||||  |||||| |||||| |||||       ||||||||||||||| ||||||||||||||||    
T  25934572 ctatgaagcacggatacggacacggacaccggacat-gacacgccgacacagctaaattttctagaaaatcacaaaatacagtgtaattatatgt 25934665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 122 - 163
Target Start/End: Original strand, 34371731 - 34371772
Alignment:
Q  122 agaaaatcacaaaatgcagtgtaattatatgtctcggtgtcg 163  Q
    ||||||||||| ||| |||||||||||||||| |||||||||    
T  34371731 agaaaatcacataattcagtgtaattatatgtgtcggtgtcg 34371772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 122 - 163
Target Start/End: Original strand, 44482248 - 44482289
Alignment:
Q  122 agaaaatcacaaaatgcagtgtaattatatgtctcggtgtcg 163  Q
    ||||||||||| ||| |||||||||||||||| |||||||||    
T  44482248 agaaaatcacataattcagtgtaattatatgtgtcggtgtcg 44482289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 61 - 114
Target Start/End: Complemental strand, 48450689 - 48450636
Alignment:
Q  61 ctatgaagcacggatacggacaagacacggacaccgacacggcgacacggctaa 114  Q
    |||||||||| ||||||||||| ||||||||||| |||||| | |||| |||||    
T  48450689 ctatgaagcatggatacggacacgacacggacactgacacgccaacacagctaa 48450636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 211
Target Start/End: Complemental strand, 6612164 - 6612112
Alignment:
Q  159 tgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtc 211  Q
    |||||||||||||| ||||| |||||  |||||| ||| ||||||||||||||    
T  6612164 tgtcggacacgatatgtgtccgacaccaggacacgcctaatccaaggagtgtc 6612112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 169
Target Start/End: Original strand, 13436479 - 13436523
Alignment:
Q  125 aaatcacaaaatgcagtgtaattatatgtctcggtgtcggacacg 169  Q
    |||||||| ||| |||||||||||||||| | |||||||||||||    
T  13436479 aaatcacataattcagtgtaattatatgtgttggtgtcggacacg 13436523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 100
Target Start/End: Original strand, 17778513 - 17778553
Alignment:
Q  60 tctatgaagcacggatacggacaagacacggacaccgacac 100  Q
    ||||||||||||||||||||||| |||||||| || |||||    
T  17778513 tctatgaagcacggatacggacacgacacggagacagacac 17778553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 219
Target Start/End: Complemental strand, 39130791 - 39130711
Alignment:
Q  139 agtgtaattatatgtctcggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttc 219  Q
    ||||||||||||||| |||||||||||||| | |||||   ||||  ||||||| | | |||||| |||||||| ||||||    
T  39130791 agtgtaattatatgtgtcggtgtcggacacaacacgtgctcgacattgggacacgcttaatccaaagagtgtccatgcttc 39130711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 84; Significance: 4e-40; HSPs: 38)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 122 - 221
Target Start/End: Complemental strand, 13845566 - 13845467
Alignment:
Q  122 agaaaatcacaaaatgcagtgtaattatatgtctcggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  13845566 agaaaatcacaaaatgcagtgtaattatatgtgtcggtgtcggacacgagacgtgtctgacacggagacacgccttatccaaggagtgtccgtgcttcat 13845467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 122 - 221
Target Start/End: Original strand, 35222956 - 35223055
Alignment:
Q  122 agaaaatcacaaaatgcagtgtaattatatgtctcggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    ||||||||||| ||| || ||||||||||||| ||||||||||||| || ||||||||||||||||||||| | |||||| |||||||||||||||||||    
T  35222956 agaaaatcacataattcaatgtaattatatgtgtcggtgtcggacatgacacgtgtctgacacggggacacgctttatccgaggagtgtccgtgcttcat 35223055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 122 - 204
Target Start/End: Original strand, 2941576 - 2941658
Alignment:
Q  122 agaaaatcacaaaatgcagtgtaattatatgtctcggtgtcggacacgatacgtgtctgacacggggacacaccttatccaag 204  Q
    ||||||||||||||| |||||||||||||||| |||||||||||||||| |||||||||||| ||||| |  |||||||||||    
T  2941576 agaaaatcacaaaatacagtgtaattatatgtgtcggtgtcggacacgacacgtgtctgacatggggatatgccttatccaag 2941658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 124 - 221
Target Start/End: Complemental strand, 40993374 - 40993277
Alignment:
Q  124 aaaatcacaaaatgcagtgtaattatatgtctcggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    ||||||||| ||| |||||||||||||||| |||||||||||||||| || |||| ||||| ||||||| ||| |||| |||||||||| ||||||||    
T  40993374 aaaatcacataattcagtgtaattatatgtgtcggtgtcggacacgacacatgtccgacaccgggacacgcctaatccgaggagtgtccatgcttcat 40993277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 124 - 221
Target Start/End: Original strand, 20503485 - 20503582
Alignment:
Q  124 aaaatcacaaaatgcagtgtaattatatgtctcggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    ||||| ||| ||| ||||||||||| | || ||||||| |||||||| || |||||||||| ||||||| ||| |||| |||||||||||||||||||    
T  20503485 aaaatgacataattcagtgtaattacaagtgtcggtgttggacacgacacatgtctgacaccgggacacgcctaatccgaggagtgtccgtgcttcat 20503582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 124 - 221
Target Start/End: Original strand, 55401095 - 55401192
Alignment:
Q  124 aaaatcacaaaatgcagtgtaattatatgtctcggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    ||||||||| |||  |||||||||| | || |||||||||||||||| ||||||| ||||| | ||||| ||| |||| |||||||||||||||||||    
T  55401095 aaaatcacataatttagtgtaattacaagtgtcggtgtcggacacgacacgtgtccgacaccgagacacgcctaatccgaggagtgtccgtgcttcat 55401192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 124 - 221
Target Start/End: Original strand, 28918021 - 28918120
Alignment:
Q  124 aaaatcacaaaatgcagtgtaattatatgtctcggtgtcg--gacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    ||||||||| ||| ||||||||||| | || |||||||||  ||||||| ||||||| ||||| ||||||| ||| ||||||||||||||| ||||||||    
T  28918021 aaaatcacataattcagtgtaattacaagtgtcggtgtcgtggacacgacacgtgtccgacactgggacacgcctaatccaaggagtgtccctgcttcat 28918120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 61 - 221
Target Start/End: Complemental strand, 26492307 - 26492147
Alignment:
Q  61 ctatgaagcacggatacggacaagacacggacaccgacacggcgacacggctaannnnnnnagaaaatcacaaaatgcagtgtaattatatgtctcggtg 160  Q
    |||||||||||| ||||||||| ||||||||||| |||||| |||||  |||||       | ||||||| | ||| ||||||||||| | || ||||||    
T  26492307 ctatgaagcacgaatacggacacgacacggacactgacacgccgacagagctaataatttgaaaaaatcatacaattcagtgtaattacaagtatcggtg 26492208  T
Q  161 tcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    |||||||||| || ||||||||||   |||||  || |||| |||| |||||| |||||||    
T  26492207 tcggacacgacacatgtctgacaccaagacacgtctaatccgaggaatgtccgcgcttcat 26492147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 122 - 221
Target Start/End: Complemental strand, 8789591 - 8789490
Alignment:
Q  122 agaaaatcacaaaatgcagtgtaattatatgtctcggtgtcggacacg--atacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttc 219  Q
    ||||||||||| ||| | |||||||||||||| |||||||||||||||  | || |||| ||||| | ||||| ||| |||| |||||||||||||||||    
T  8789591 agaaaatcacataattccgtgtaattatatgtgtcggtgtcggacacgacacacatgtcggacaccgagacacgcctaatccgaggagtgtccgtgcttc 8789492  T
Q  220 at 221  Q
    ||    
T  8789491 at 8789490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 124 - 221
Target Start/End: Original strand, 18426969 - 18427066
Alignment:
Q  124 aaaatcacaaaatgcagtgtaattatatgtctcggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    ||||||||| ||| | |||||||||||| | ||||||||||| |||| ||||||| | ||| ||||||||||| |||  ||||||||||||| |||||    
T  18426969 aaaatcacataattcggtgtaattatatatgtcggtgtcggatacgacacgtgtccggcaccgggacacacctaatctgaggagtgtccgtgtttcat 18427066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 65 - 221
Target Start/End: Original strand, 10954911 - 10955072
Alignment:
Q  65 gaagcacggatacggacaa--gacacggacaccgacacggcgacacggctaannnnnnnagaaaatcacaaaatgcagtgtaattatatgtctcggtgtc 162  Q
    ||||||||||||||||||   |||||| |||| |||||| ||||||  ||||       | ||||||||| ||| ||||||||| | | || ||||||||    
T  10954911 gaagcacggatacggacaccggacacgaacactgacacgccgacacaactaataatttgaaaaaatcacataattcagtgtaatcacaagtgtcggtgtc 10955010  T
Q  163 ggacacgatacgtgtctgacacggggacacaccttatccaagg---agtgtccgtgcttcat 221  Q
    |||||||| ||||||| ||||| ||||||| ||| |||| |||   ||||||||||||||||    
T  10955011 ggacacgacacgtgtccgacactgggacacgcctaatccgaggagtagtgtccgtgcttcat 10955072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 122 - 163
Target Start/End: Original strand, 14028025 - 14028066
Alignment:
Q  122 agaaaatcacaaaatgcagtgtaattatatgtctcggtgtcg 163  Q
    |||||||||||||||||||||||||||||||| |||||||||    
T  14028025 agaaaatcacaaaatgcagtgtaattatatgtgtcggtgtcg 14028066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 77 - 221
Target Start/End: Complemental strand, 24205127 - 24204983
Alignment:
Q  77 cggacaagacacggacaccgacacggcgacacggctaannnnnnnagaaaatcacaaaatgcagtgtaattatatgtctcggtgtcggacac-gatacgt 175  Q
    |||||| ||||||||||| |||||| |||||||| |||       ||||||| ||| ||| ||||||||||||| || || ||||||||||| ||  |||    
T  24205127 cggacacgacacggacactgacacgccgacacggataataatttgagaaaatgacataatacagtgtaattataagtgtc-gtgtcggacactgacgcgt 24205029  T
Q  176 gtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    ||| |||||  |||||| ||| || | |||||||||||||||||||    
T  24205028 gtccgacaccaggacacgcctaattcgaggagtgtccgtgcttcat 24204983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 158 - 221
Target Start/End: Original strand, 14216957 - 14217020
Alignment:
Q  158 gtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    ||||||||||||| ||||||  ||||| ||||||||||| |||| || ||||||||||||||||    
T  14216957 gtgtcggacacgacacgtgtacgacactgggacacacctaatccgagaagtgtccgtgcttcat 14217020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 158 - 221
Target Start/End: Original strand, 14223086 - 14223149
Alignment:
Q  158 gtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    ||||||||||||| ||||||  ||||| ||||||||||| |||| || ||||||||||||||||    
T  14223086 gtgtcggacacgacacgtgtacgacactgggacacacctaatccgagaagtgtccgtgcttcat 14223149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 155 - 221
Target Start/End: Complemental strand, 4987288 - 4987222
Alignment:
Q  155 tcggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    ||||||| |||||||| ||||||| ||||| ||||||| ||| |||| |||||||||||| ||||||    
T  4987288 tcggtgttggacacgacacgtgtccgacaccgggacacgcctaatccgaggagtgtccgtacttcat 4987222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 155 - 221
Target Start/End: Original strand, 14209175 - 14209241
Alignment:
Q  155 tcggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    |||||||||||||||| ||||||  ||||  |||| |||||| ||||||| ||||||||||||||||    
T  14209175 tcggtgtcggacacgacacgtgtacgacatcgggatacacctaatccaagaagtgtccgtgcttcat 14209241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 122 - 168
Target Start/End: Original strand, 25093520 - 25093566
Alignment:
Q  122 agaaaatcacaaaatgcagtgtaattatatgtctcggtgtcggacac 168  Q
    ||||||||||| ||| |||||||||||||||| ||||||||||||||    
T  25093520 agaaaatcacacaattcagtgtaattatatgtgtcggtgtcggacac 25093566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 175 - 221
Target Start/End: Original strand, 37077441 - 37077487
Alignment:
Q  175 tgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    |||| ||||||||||||||||| ||||||||| ||||||||||||||    
T  37077441 tgtccgacacggggacacacctaatccaaggaatgtccgtgcttcat 37077487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 155 - 221
Target Start/End: Complemental strand, 41961647 - 41961581
Alignment:
Q  155 tcggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    ||||| |||||||||| ||||||| ||||| ||||||| ||| |||| || ||||||||||||||||    
T  41961647 tcggtatcggacacgacacgtgtccgacactgggacacgcctaatccgagaagtgtccgtgcttcat 41961581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 124 - 169
Target Start/End: Original strand, 7928470 - 7928515
Alignment:
Q  124 aaaatcacaaaatgcagtgtaattatatgtctcggtgtcggacacg 169  Q
    ||||||||| ||| |||||||||||||||| |||||||||||||||    
T  7928470 aaaatcacataattcagtgtaattatatgtgtcggtgtcggacacg 7928515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 216
Target Start/End: Original strand, 3631708 - 3631796
Alignment:
Q  128 tcacaaaatgcagtgtaattatatgtctcggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgc 216  Q
    ||||| ||| ||||||||||||||||  | ||||||||||||| || |||| |||||  |||||| |||  ||| ||||||||||||||    
T  3631708 tcacataattcagtgtaattatatgtgccagtgtcggacacgacacatgtccgacaccaggacacgcctagtccgaggagtgtccgtgc 3631796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 221
Target Start/End: Original strand, 15864886 - 15864949
Alignment:
Q  158 gtgtcggacac-gatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    ||||||||||| || |||||||||||||||| |||| ||| |||||| |||||||||||||||||    
T  15864886 gtgtcggacaccgacacgtgtctgacacggg-acacgcctaatccaaagagtgtccgtgcttcat 15864949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 221
Target Start/End: Complemental strand, 16000008 - 15999952
Alignment:
Q  165 acacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    |||||| ||||||| ||||| ||||||| ||| ||||||||||||||||||| ||||    
T  16000008 acacgacacgtgtccgacaccgggacacgcctaatccaaggagtgtccgtgcatcat 15999952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 217
Target Start/End: Original strand, 25064971 - 25065031
Alignment:
Q  157 ggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgct 217  Q
    |||||||||||||| ||||||||||||| |||||||   |||||| |||||||| ||||||    
T  25064971 ggtgtcggacacgacacgtgtctgacaccgggacacggtttatccgaggagtgttcgtgct 25065031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 221
Target Start/End: Original strand, 25775531 - 25775624
Alignment:
Q  126 aatcacaaaatgcagtgtaattatatgtctcggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    ||||||| ||| ||||||||||| | || |||||||||||||||   |||||| |||||  |||||| ||| |||| |||||||| ||||||||||    
T  25775531 aatcacataattcagtgtaattacaagtgtcggtgtcggacacg--tcgtgtccgacaccaggacacgcctaatccgaggagtgttcgtgcttcat 25775624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 95
Target Start/End: Complemental strand, 40993434 - 40993398
Alignment:
Q  59 atctatgaagcacggatacggacaagacacggacacc 95  Q
    |||||||||||||||||||||||| ||||||||||||    
T  40993434 atctatgaagcacggatacggacacgacacggacacc 40993398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 221
Target Start/End: Complemental strand, 4466641 - 4466542
Alignment:
Q  122 agaaaatcacaaaatgcagtgtaattatatgtctcggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    ||||||||| | ||| |||||||  |||||||  |||||||||| || | | ||||| ||||| |||||||  ||||| | |||||||||||||||||||    
T  4466641 agaaaatcatataattcagtgtagctatatgtgccggtgtcggatacaagatgtgtccgacactgggacacggcttattcgaggagtgtccgtgcttcat 4466542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 221
Target Start/End: Complemental strand, 10690257 - 10690194
Alignment:
Q  158 gtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    ||||||||||| | ||||||||||||||| ||||||||| |||| |||| |||  |||||||||    
T  10690257 gtgtcggacacaacacgtgtctgacacggcgacacacctaatccgaggaatgtatgtgcttcat 10690194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 221
Target Start/End: Original strand, 27505305 - 27505368
Alignment:
Q  158 gtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    ||||| ||||||| ||||||| ||||| ||||||  ||| |||| |||||||||||||||||||    
T  27505305 gtgtctgacacgacacgtgtccgacaccgggacatgcctaatccgaggagtgtccgtgcttcat 27505368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 210
Target Start/End: Original strand, 7171537 - 7171607
Alignment:
Q  140 gtgtaattatatgtctcggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgt 210  Q
    ||||||||| | || | |||||||||||||| ||||||| ||||| | ||||| ||| |||||||||||||    
T  7171537 gtgtaattacaagtgttggtgtcggacacgacacgtgtccgacaccgcgacacgcctaatccaaggagtgt 7171607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 169
Target Start/End: Original strand, 8383231 - 8383322
Alignment:
Q  78 ggacaagacacggacaccgacacggcgacacggctaannnnnnnagaaaatcacaaaatgcagtgtaattatatgtctcggtgtcggacacg 169  Q
    ||||| ||||||||||  |||||| |||||| |||||       ||||||||| | ||| ||||||||||||| || |||||||||||||||    
T  8383231 ggacacgacacggacattgacacgccgacaccgctaataatttgagaaaatcatataattcagtgtaattataagtgtcggtgtcggacacg 8383322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 169
Target Start/End: Complemental strand, 11507515 - 11507469
Alignment:
Q  123 gaaaatcacaaaatgcagtgtaattatatgtctcggtgtcggacacg 169  Q
    |||||||||| ||| |||||||||||||||| ||||| |||||||||    
T  11507515 gaaaatcacataattcagtgtaattatatgtttcggtatcggacacg 11507469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 221
Target Start/End: Complemental strand, 34185116 - 34185054
Alignment:
Q  159 tgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    ||||||||| || | ||||| ||||| ||||||| ||| |||| |||||||||||||||||||    
T  34185116 tgtcggacaagacatgtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcat 34185054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 124 - 221
Target Start/End: Complemental strand, 51206392 - 51206295
Alignment:
Q  124 aaaatcacaaaatgcagtgtaattatatgtctcggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    ||||||||| ||| |||||||| || | || ||||||||||||||    || ||| ||||| |||| ||  || ||||||||||||||||||||||||    
T  51206392 aaaatcacataattcagtgtaaatacaagtgtcggtgtcggacacatgtcgcgtccgacaccgggatacctctaatccaaggagtgtccgtgcttcat 51206295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 221
Target Start/End: Original strand, 11251996 - 11252093
Alignment:
Q  122 agaaaatcacaaaatgcagtgtaattatatgtctcggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    ||||||||||| ||| |||||||||  ||||| |||||||| ||||| | ||||||| | ||  || |||| ||| |||| ||||||||| |||||||||    
T  11251996 agaaaatcacataattcagtgtaat--tatgtgtcggtgtcagacacaacacgtgtccggcatcggaacacgcctaatccgaggagtgtctgtgcttcat 11252093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 25074864 - 25074912
Alignment:
Q  173 cgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    |||||| ||||| ||||||||||| |||| |||||||| ||||||||||    
T  25074864 cgtgtccgacactgggacacacctaatccgaggagtgttcgtgcttcat 25074912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 221
Target Start/End: Original strand, 29508503 - 29508567
Alignment:
Q  157 ggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    |||||||||||||| ||  ||| ||||| |||||||  || ||||||| ||||||||||||||||    
T  29508503 ggtgtcggacacgacacacgtccgacaccgggacacgtctaatccaagaagtgtccgtgcttcat 29508567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 75; Significance: 1e-34; HSPs: 32)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 123 - 221
Target Start/End: Complemental strand, 43737851 - 43737753
Alignment:
Q  123 gaaaatcacaaaatgcagtgtaattatatgtctcggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    |||||||||||||| |||||||||||||||| |||||||||||||||| | |||||||||||||||| || ||||||||||||||||||||||||||||    
T  43737851 gaaaatcacaaaatacagtgtaattatatgtgtcggtgtcggacacgacaggtgtctgacacggggatacgccttatccaaggagtgtccgtgcttcat 43737753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 124 - 221
Target Start/End: Complemental strand, 3951575 - 3951478
Alignment:
Q  124 aaaatcacaaaatgcagtgtaattatatgtctcggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    ||||||||||||||||||||| |||||||| |||||||| ||||||| |||||||||||||||| |||| ||| ||||||||||| ||||||||||||    
T  3951575 aaaatcacaaaatgcagtgtacttatatgtgtcggtgtcagacacgacacgtgtctgacacgggaacacgcctaatccaaggagtttccgtgcttcat 3951478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 155 - 221
Target Start/End: Complemental strand, 34451029 - 34450963
Alignment:
Q  155 tcggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    |||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  34451029 tcggtgtcggacacgacacgtgtctgacacggggacacgccttatccaaggagtgtccgtgcttcat 34450963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 122 - 221
Target Start/End: Original strand, 3025569 - 3025668
Alignment:
Q  122 agaaaatcacaaaatgcagtgtaattatatgtctcggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    ||||||||||| ||| ||||||||||||| || || ||||||||||||| ||||||||||||| | |||||  || |||| |||||||||||||||||||    
T  3025569 agaaaatcacataattcagtgtaattataggtgtcagtgtcggacacgacacgtgtctgacactgtgacacggctaatccgaggagtgtccgtgcttcat 3025668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 138 - 221
Target Start/End: Complemental strand, 926813 - 926730
Alignment:
Q  138 cagtgtaattatatgtctcggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    ||||||||||||| || |||||||||||| ||| ||||||| ||||| ||||||  | |||||| |||||||||||||||||||    
T  926813 cagtgtaattataagtgtcggtgtcggacgcgacacgtgtccgacaccgggacatgctttatccgaggagtgtccgtgcttcat 926730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 158 - 221
Target Start/End: Complemental strand, 26902169 - 26902106
Alignment:
Q  158 gtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    ||||||||||||| ||||||||| ||||||||||| |||||||  |||||||||||||||||||    
T  26902169 gtgtcggacacgacacgtgtctggcacggggacacgccttatctgaggagtgtccgtgcttcat 26902106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 122 - 217
Target Start/End: Complemental strand, 33405425 - 33405330
Alignment:
Q  122 agaaaatcacaaaatgcagtgtaattatatgtctcggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgct 217  Q
    |||||| |||| |||  ||||||||||||||| |||||||||||||||| || ||||||||||  ||||||  || |||||| |||||||||||||    
T  33405425 agaaaaacacataatttagtgtaattatatgtgtcggtgtcggacacgacacatgtctgacacctggacacggctaatccaatgagtgtccgtgct 33405330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 155 - 221
Target Start/End: Complemental strand, 29510301 - 29510235
Alignment:
Q  155 tcggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    ||||||||||||||||  |||||| ||||| ||||||||||| |||| |||||||||||||||||||    
T  29510301 tcggtgtcggacacgacgcgtgtccgacaccgggacacacctaatccgaggagtgtccgtgcttcat 29510235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 122 - 221
Target Start/End: Complemental strand, 20679436 - 20679337
Alignment:
Q  122 agaaaatcacaaaatgcagtgtaattatatgtctcggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    ||||||||||| | | ||||||||||||| || |||||||| ||| | | ||||||| ||||| ||||||| ||||| || |||||||||| ||||||||    
T  20679436 agaaaatcacatagttcagtgtaattataagtgtcggtgtcagacgcaacacgtgtccgacaccgggacacgccttaaccgaggagtgtccatgcttcat 20679337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 62 - 178
Target Start/End: Original strand, 20873027 - 20873143
Alignment:
Q  62 tatgaagcacggatacggacaagacacggacaccgacacggcgacacggctaannnnnnnagaaaatcacaaaatgcagtgtaattatatgtctcggtgt 161  Q
    ||||||||||| ||||||||| ||||||||||| |||||| |||||  | |||       | ||||||||| |||  |||||||||| | || |||||||    
T  20873027 tatgaagcacgaatacggacacgacacggacactgacacgccgacatagataataatttgaaaaaatcacataatttagtgtaattacaagtgtcggtgt 20873126  T
Q  162 cggacacgatacgtgtc 178  Q
    |||||||||||||||||    
T  20873127 cggacacgatacgtgtc 20873143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 61 - 221
Target Start/End: Complemental strand, 36450851 - 36450696
Alignment:
Q  61 ctatgaagcacggatacggacaagacacggacaccgacacggcgacacggctaannnnnnnagaaaatcacaaaatgcagtgtaattatatgtctcggtg 160  Q
    ||||||||||||||||||||||     ||||||| |||||| ||||||  ||||       | ||||||||| ||| ||||||||||| | || | ||||    
T  36450851 ctatgaagcacggatacggaca-----cggacactgacacgccgacacaactaataatttgaaaaaatcacagaattcagtgtaattacaagtgtaggtg 36450757  T
Q  161 tcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    ||||||||||  |||||| |||||  |||||| ||| |||| ||||||||| |||||||||    
T  36450756 tcggacacgacgcgtgtccgacaccaggacacgcctaatccgaggagtgtctgtgcttcat 36450696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 155 - 221
Target Start/End: Complemental strand, 29447107 - 29447041
Alignment:
Q  155 tcggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    |||||||||||||||| | |||||||||||  |||||| ||| |||| |||||||||||||||||||    
T  29447107 tcggtgtcggacacgacatgtgtctgacaccaggacacgcctaatcctaggagtgtccgtgcttcat 29447041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 122 - 220
Target Start/End: Original strand, 40332209 - 40332307
Alignment:
Q  122 agaaaatcacaaaatgcagtgtaattatatgtctcggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttca 220  Q
    ||||||||||| ||| ||||||||||| | || ||||||| |||||||| |||||||  |||| ||||| | ||| |||| ||||||||||||| ||||    
T  40332209 agaaaatcacataattcagtgtaattacaagtgtcggtgtgggacacgacacgtgtcccacaccgggacgcgcctaatccgaggagtgtccgtgtttca 40332307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 122 - 221
Target Start/End: Original strand, 14134717 - 14134816
Alignment:
Q  122 agaaaatcacaaaatgcagtgtaattatatgtctcggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    ||||||||||| ||| |||||||||||||| | ||||||||  |||||| ||||||| | |||  |||||| ||| || | ||||||||||||| |||||    
T  14134717 agaaaatcacataattcagtgtaattatatatgtcggtgtcaaacacgacacgtgtccgtcaccaggacacgcctaattcgaggagtgtccgtgtttcat 14134816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 158 - 221
Target Start/End: Complemental strand, 16641974 - 16641911
Alignment:
Q  158 gtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    ||||||||||||| | |||||| |||| ||||||||||| |||| ||||||||| |||||||||    
T  16641974 gtgtcggacacgacatgtgtctaacaccgggacacacctaatccgaggagtgtctgtgcttcat 16641911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 155 - 221
Target Start/End: Original strand, 22652038 - 22652104
Alignment:
Q  155 tcggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    |||||||||||||||| | ||||| ||||| |||||||  || |||| |||||||||||||||||||    
T  22652038 tcggtgtcggacacgacatgtgtccgacaccgggacacgtctaatccgaggagtgtccgtgcttcat 22652104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 84 - 218
Target Start/End: Complemental strand, 31109597 - 31109463
Alignment:
Q  84 gacacggacaccgacacggcgacacggctaannnnnnnagaaaatcacaaaatgcagtgtaattatatgtctcggtgtcggacacgatacgtgtctgaca 183  Q
    ||||||||||| |||||| |||||| | |||       ||||||||| | ||| |||| ||| ||||||| || |||||||||| |   ||||| |||||    
T  31109597 gacacggacactgacacgccgacaccgttaataatttgagaaaatcaaacaattcagtctaactatatgtgtcagtgtcggacatgtgtcgtgtatgaca 31109498  T
Q  184 cggggacacaccttatccaaggagtgtccgtgctt 218  Q
    | ||||||| ||| |||| ||||||||||||||||    
T  31109497 ctgggacacgcctaatccgaggagtgtccgtgctt 31109463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 124 - 221
Target Start/End: Original strand, 31557016 - 31557113
Alignment:
Q  124 aaaatcacaaaatgcagtgtaattatatgtctcggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    ||||||||| ||| ||||||||||| | || |||||||| ||||||| || |||| |||||  |||||| ||| |||||||| |||||| ||| ||||    
T  31557016 aaaatcacataattcagtgtaattacaagtttcggtgtcagacacgacacatgtccgacaccaggacacgcctaatccaaggtgtgtccatgcctcat 31557113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 122 - 170
Target Start/End: Complemental strand, 4786379 - 4786331
Alignment:
Q  122 agaaaatcacaaaatgcagtgtaattatatgtctcggtgtcggacacga 170  Q
    ||||||||||| ||| |||||||||||||||| ||||||||||| ||||    
T  4786379 agaaaatcacataattcagtgtaattatatgtgtcggtgtcggatacga 4786331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 219
Target Start/End: Original strand, 5813643 - 5813707
Alignment:
Q  155 tcggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttc 219  Q
    |||||||||||||||| ||||||| ||||| ||||||| ||| ||   |||||||||||||||||    
T  5813643 tcggtgtcggacacgacacgtgtccgacaccgggacacgcctaattggaggagtgtccgtgcttc 5813707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 168
Target Start/End: Original strand, 34897068 - 34897149
Alignment:
Q  87 acggacaccgacacggcgacacggctaannnnnnnagaaaatcacaaaatgcagtgtaattatatgtctcggtgtcggacac 168  Q
    |||||||| |||||| |||||| |||||       ||||||||||| ||| |||||||||||||||| ||| ||||||||||    
T  34897068 acggacacagacacgtcgacaccgctaataatttgagaaaatcacataattcagtgtaattatatgtgtcgatgtcggacac 34897149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 215
Target Start/End: Complemental strand, 126369 - 126295
Alignment:
Q  141 tgtaattatatgtctcggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtg 215  Q
    ||||||||||||| || ||||||||||||| |||||||  | || |||||||  || |||| |||||||||||||    
T  126369 tgtaattatatgtgtcagtgtcggacacgacacgtgtccaataccgggacacggctaatccgaggagtgtccgtg 126295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 168
Target Start/End: Complemental strand, 13844637 - 13844591
Alignment:
Q  122 agaaaatcacaaaatgcagtgtaattatatgtctcggtgtcggacac 168  Q
    ||||||||||| |||  ||||||||||||||| ||||||||||||||    
T  13844637 agaaaatcacataattgagtgtaattatatgtgtcggtgtcggacac 13844591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 221
Target Start/End: Complemental strand, 34127208 - 34127174
Alignment:
Q  187 ggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    |||||||||| ||||||||||||||||||||||||    
T  34127208 ggacacacctaatccaaggagtgtccgtgcttcat 34127174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 153
Target Start/End: Complemental strand, 34451077 - 34451047
Alignment:
Q  123 gaaaatcacaaaatgcagtgtaattatatgt 153  Q
    |||||||||||||||||||||||||||||||    
T  34451077 gaaaatcacaaaatgcagtgtaattatatgt 34451047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 221
Target Start/End: Complemental strand, 37283851 - 37283757
Alignment:
Q  122 agaaaatcacaaaatgcagtgtaattatatgtctcggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    ||||||||||| ||| |||||||||  ||||| ||||||| |||||||| ||||||||   || |||||||  || |||| ||||||| |||||||||||    
T  37283851 agaaaatcacataattcagtgtaat--tatgtgtcggtgtgggacacgacacgtgtct---accgggacacgtctaatccgaggagtgcccgtgcttcat 37283757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 124 - 221
Target Start/End: Original strand, 18407739 - 18407836
Alignment:
Q  124 aaaatcacaaaatgcagtgtaattatatgtctcggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    ||||||||| ||| ||||||||||| | || ||| || ||||||||| || |||| |||||  |||||| ||| ||   |||||||||||||||||||    
T  18407739 aaaatcacataattcagtgtaattacaagtgtcgctgccggacacgacacatgtccgacactaggacacgcctaattggaggagtgtccgtgcttcat 18407836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 122 - 163
Target Start/End: Complemental strand, 26902216 - 26902175
Alignment:
Q  122 agaaaatcacaaaatgcagtgtaattatatgtctcggtgtcg 163  Q
    ||||||||||| ||| |||||||||||||||| |||||||||    
T  26902216 agaaaatcacataattcagtgtaattatatgtgtcggtgtcg 26902175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 122 - 171
Target Start/End: Complemental strand, 31236618 - 31236569
Alignment:
Q  122 agaaaatcacaaaatgcagtgtaattatatgtctcggtgtcggacacgat 171  Q
    ||||||||||| ||| || ||||||||||||| |||||| ||||||||||    
T  31236618 agaaaatcacataattcaatgtaattatatgtgtcggtgacggacacgat 31236569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 168 - 221
Target Start/End: Complemental strand, 33389350 - 33389297
Alignment:
Q  168 cgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    ||||||||||| ||||| |||| |||||| ||||||| |||||| |||||||||    
T  33389350 cgatacgtgtccgacactgggatacacctaatccaagaagtgtcggtgcttcat 33389297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 210
Target Start/End: Original strand, 8293859 - 8293931
Alignment:
Q  138 cagtgtaattatatgtctcggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgt 210  Q
    |||||||||||||||| ||||||||  ||| || || | ||||||||  |||||||||| |||| ||||||||    
T  8293859 cagtgtaattatatgtgtcggtgtcaaacatgacacatatctgacacctggacacacctaatccgaggagtgt 8293931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 221
Target Start/End: Complemental strand, 15816124 - 15816060
Alignment:
Q  157 ggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    |||||||||||||| |||  || ||||| ||||||| ||| |||| || ||||||||||||||||    
T  15816124 ggtgtcggacacgacacgaatccgacaccgggacacgcctaatccgagaagtgtccgtgcttcat 15816060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 69; Significance: 4e-31; HSPs: 36)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 64 - 221
Target Start/End: Original strand, 13789114 - 13789271
Alignment:
Q  64 tgaagcacggatacggacaagacacggacaccgacacggcgacacggctaannnnnnnagaaaatcacaaaatgcagtgtaattatatgtctcggtgtcg 163  Q
    ||||||||| ||||||||| |||||||||| ||||||| |||||| |||||       | ||||||| |||||||||||||||||||||| ||  |||||    
T  13789114 tgaagcacgaatacggacacgacacggacatcgacacgtcgacacagctaaatttttaaaaaaatcataaaatgcagtgtaattatatgtatcaatgtcg 13789213  T
Q  164 gacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    |||| || |||||||||||| ||||| || |||||| |||||||||| ||||||||||    
T  13789214 gacatgacacgtgtctgacatggggatacgccttattcaaggagtgttcgtgcttcat 13789271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 64 - 221
Target Start/End: Original strand, 13797733 - 13797890
Alignment:
Q  64 tgaagcacggatacggacaagacacggacaccgacacggcgacacggctaannnnnnnagaaaatcacaaaatgcagtgtaattatatgtctcggtgtcg 163  Q
    ||||||||| ||||||||| |||||||||| ||||||| |||||| |||||       | ||||||| |||||||||||||||||||||| ||  |||||    
T  13797733 tgaagcacgaatacggacacgacacggacatcgacacgtcgacacagctaaatttttaaaaaaatcataaaatgcagtgtaattatatgtatcaatgtcg 13797832  T
Q  164 gacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    |||| || |||||||||||| ||||| || |||||| |||||||||| ||||||||||    
T  13797833 gacatgacacgtgtctgacatggggatacgccttattcaaggagtgttcgtgcttcat 13797890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 61 - 221
Target Start/End: Original strand, 34595090 - 34595251
Alignment:
Q  61 ctatgaagcacggatac-ggacaagacacggacaccgacacggcgacacggctaannnnnnnagaaaatcacaaaatgcagtgtaattatatgtctcggt 159  Q
    |||||||||||||| || ||||| ||||||||||  |||||| ||||||  ||||       | ||||||||| ||| ||||||||||| | || |||||    
T  34595090 ctatgaagcacggacaccggacacgacacggacaatgacacgccgacacaactaataatttgaaaaaatcacataattcagtgtaattacaagtgtcggt 34595189  T
Q  160 gtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    ||||||||||| ||||||||||||| ||||||||||| |||| |||||||||||||||||||    
T  34595190 gtcggacacgacacgtgtctgacaccgggacacacctaatccgaggagtgtccgtgcttcat 34595251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 122 - 221
Target Start/End: Original strand, 18367854 - 18367964
Alignment:
Q  122 agaaaatcacaaaatgcagtgtaattatatgtctcggtgtcg-----------gacacgatacgtgtctgacacggggacacaccttatccaaggagtgt 210  Q
    |||||||||||||||||||||||||||||||| |||||||||           ||||||| || |||||||||||||||||| |||||||||||||||||    
T  18367854 agaaaatcacaaaatgcagtgtaattatatgtgtcggtgtcgtgtcggtgtcagacacgacacatgtctgacacggggacacgccttatccaaggagtgt 18367953  T
Q  211 ccgtgcttcat 221  Q
    |||||||||||    
T  18367954 ccgtgcttcat 18367964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 79 - 221
Target Start/End: Original strand, 9658854 - 9658997
Alignment:
Q  79 gacaagacacggacaccgacacggcgacacggctaannnnnnnagaaaatcacaaaatgcagtgtaattatatgtctcggtgtcggacacgatacgtgtc 178  Q
    |||| ||||||||||| |||||| |||||| |||||       ||||||||||| ||| |||||||||||||| | |||||||  ||||||| |||||||    
T  9658854 gacacgacacggacactgacacgccgacaccgctaataatttaagaaaatcacataattcagtgtaattatatttgtcggtgttagacacgacacgtgtc 9658953  T
Q  179 tgacacggggacacacctta-tccaaggagtgtccgtgcttcat 221  Q
    |||||| || |||| ||| | |||||||||||||||||||||||    
T  9658954 tgacaccggaacacgcctaattccaaggagtgtccgtgcttcat 9658997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 158 - 221
Target Start/End: Original strand, 12696383 - 12696446
Alignment:
Q  158 gtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    ||||||||||||| ||||||||||||| |||||||||||||||||||||||||| |||||||||    
T  12696383 gtgtcggacacgacacgtgtctgacaccgggacacaccttatccaaggagtgtctgtgcttcat 12696446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 122 - 221
Target Start/End: Complemental strand, 16488631 - 16488521
Alignment:
Q  122 agaaaatcacaaaatgcagtgtaattatatgtctcggtgtcg-----------gacacgatacgtgtctgacacggggacacaccttatccaaggagtgt 210  Q
    |||||||||||||||||||||||||||||||| |||||||||           ||||||| ||||||||| ||||||||||| ||||||||||||| |||    
T  16488631 agaaaatcacaaaatgcagtgtaattatatgtgtcggtgtcgtgtcggtgtcggacacgacacgtgtctggcacggggacacgccttatccaaggaatgt 16488532  T
Q  211 ccgtgcttcat 221  Q
     ||||||||||    
T  16488531 tcgtgcttcat 16488521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 124 - 221
Target Start/End: Original strand, 28152118 - 28152215
Alignment:
Q  124 aaaatcacaaaatgcagtgtaattatatgtctcggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    ||||||||| ||| ||||||||||| | || |||||||||||||||| ||||||| ||||| ||||||  ||| |||| |||||||| ||||||||||    
T  28152118 aaaatcacataattcagtgtaattacaagtgtcggtgtcggacacgacacgtgtccgacaccgggacaggcctaatccgaggagtgttcgtgcttcat 28152215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 122 - 221
Target Start/End: Complemental strand, 7265634 - 7265535
Alignment:
Q  122 agaaaatcacaaaatgcagtgtaattatatgtctcggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    ||||||||||| ||| |||||||||||||||| |||||||||||||| |||| |||| ||||| || | |  ||| |||| ||||| |||||||||||||    
T  7265634 agaaaatcacataattcagtgtaattatatgtgtcggtgtcggacacaatacatgtccgacaccggaatatgcctaatccgaggagcgtccgtgcttcat 7265535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 158 - 221
Target Start/End: Complemental strand, 17327655 - 17327592
Alignment:
Q  158 gtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    ||||||||||||| ||||||||||||| ||||||| ||| |||| |||||||||||||||||||    
T  17327655 gtgtcggacacgacacgtgtctgacacagggacacgcctaatccgaggagtgtccgtgcttcat 17327592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 122 - 220
Target Start/End: Complemental strand, 7996419 - 7996325
Alignment:
Q  122 agaaaatcacaaaatgcagtgtaattatatgtctcggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttca 220  Q
    ||||||||| | ||| |||||||||||||||  |||||||||    ||| |||||||| |||||||||||| ||| ||||||||||| |||||||||||    
T  7996419 agaaaatcatataattcagtgtaattatatgcgtcggtgtcg----cgacacgtgtctaacacggggacacgcctaatccaaggagtctccgtgcttca 7996325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 122 - 220
Target Start/End: Original strand, 8022382 - 8022476
Alignment:
Q  122 agaaaatcacaaaatgcagtgtaattatatgtctcggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttca 220  Q
    ||||||||| | ||| |||||||||||||||  |||||||||    ||| |||||||| |||||||||||| ||| ||||||||||| |||||||||||    
T  8022382 agaaaatcatataattcagtgtaattatatgcgtcggtgtcg----cgacacgtgtctaacacggggacacgcctaatccaaggagtctccgtgcttca 8022476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 76 - 221
Target Start/End: Complemental strand, 8777060 - 8776910
Alignment:
Q  76 acggacaagacacggacaccgacacggcgacacggctaannnnnnnagaaaatcacaaaatgcagtgtaattatatgtctcggtgtcggac-----acga 170  Q
    ||||||| ||||||||||| |||||| ||||||  ||||       | ||||||||||||| ||||||||||| | || | ||||||||||     ||||    
T  8777060 acggacacgacacggacactgacacgccgacacaactaataatttgaaaaaatcacaaaattcagtgtaattacaagtgttggtgtcggacacgacacga 8776961  T
Q  171 tacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
     ||||||| ||||| | ||||||||| |||| |||||||||||||||||||    
T  8776960 cacgtgtccgacaccgagacacacctaatccgaggagtgtccgtgcttcat 8776910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 139 - 220
Target Start/End: Complemental strand, 32978923 - 32978842
Alignment:
Q  139 agtgtaattatatgtctcggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttca 220  Q
    |||||||||| | || |||||||||||||||| || |||| ||||| |||||||  || |||||||||||||||||||||||    
T  32978923 agtgtaattacaagtgtcggtgtcggacacgacacatgtccgacaccgggacacgtctaatccaaggagtgtccgtgcttca 32978842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 84 - 221
Target Start/End: Complemental strand, 17841668 - 17841531
Alignment:
Q  84 gacacggacaccgacacggcgacacggctaannnnnnnagaaaatcacaaaatgcagtgtaattatatgtctcggtgtcggacacgatacgtgtctgaca 183  Q
    ||||||||||| |||||| |||||| |||||       | ||||||||| |||  |||||||||| | ||  ||||||||||||||| | ||||| ||||    
T  17841668 gacacggacactgacacgccgacacagctaataatttgaaaaaatcacataatttagtgtaattacaagtgacggtgtcggacacgacatgtgtccgaca 17841569  T
Q  184 cggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    | | ||||| ||| |||| |||||||||||||||||||    
T  17841568 ctgagacacgcctaatccgaggagtgtccgtgcttcat 17841531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 124 - 221
Target Start/End: Complemental strand, 33001328 - 33001231
Alignment:
Q  124 aaaatcacaaaatgcagtgtaattatatgtctcggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    ||||||||| |||  | ||||||||||||| |||||||||||||||| ||||||||||||| |  | || ||| |||||| ||||||  |||||||||    
T  33001328 aaaatcacataattaaatgtaattatatgtgtcggtgtcggacacgacacgtgtctgacaccgaaatacgcctaatccaaagagtgtttgtgcttcat 33001231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 177 - 221
Target Start/End: Original strand, 34446644 - 34446688
Alignment:
Q  177 tctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    |||||||| ||||||||||| ||||||||||||||||||||||||    
T  34446644 tctgacactgggacacacctaatccaaggagtgtccgtgcttcat 34446688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 122 - 221
Target Start/End: Original strand, 7377997 - 7378096
Alignment:
Q  122 agaaaatcacaaaatgcagtgtaattatatgtctcggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    ||||||||||| ||| || ||||||||||||| |||||||||||||||| | |  || ||||| |||||||  || |||  || ||||||||||||||||    
T  7377997 agaaaatcacataattcaatgtaattatatgtgtcggtgtcggacacgacatgcatccgacaccgggacacggctaatctgagaagtgtccgtgcttcat 7378096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 122 - 221
Target Start/End: Complemental strand, 13360413 - 13360315
Alignment:
Q  122 agaaaatcacaaaatgcagtgtaattatatgtctcggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    ||||||||||| ||| |||||||||||||||| |||||||| ||||| | |  |||| ||||| | ||||| ||| |||| | |||||||||||||||||    
T  13360413 agaaaatcacataattcagtgtaattatatgtttcggtgtcagacacaaca-atgtccgacactgagacacgcctaatccgaagagtgtccgtgcttcat 13360315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 122 - 221
Target Start/End: Complemental strand, 13364746 - 13364647
Alignment:
Q  122 agaaaatcacaaaatgcagtgtaattatatgtctcggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    ||||||||| | ||| ||||||||| |||||| ||||||| ||||||||||| ||||||||||  ||||||  ||  ||| | ||||||| |||||||||    
T  13364746 agaaaatcatataattcagtgtaatcatatgtgtcggtgttggacacgatacatgtctgacaccaggacacgtctattccgacgagtgtctgtgcttcat 13364647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 158 - 221
Target Start/End: Original strand, 31384984 - 31385047
Alignment:
Q  158 gtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    |||| |||||||| |||||||  |||| ||||||| ||| ||||||||||||||||||||||||    
T  31384984 gtgttggacacgacacgtgtcctacaccgggacacgcctaatccaaggagtgtccgtgcttcat 31385047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 155 - 221
Target Start/End: Complemental strand, 8365516 - 8365450
Alignment:
Q  155 tcggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    ||||| |||||||||| ||||||| ||||| ||||||| ||| |||| |||||| ||||||||||||    
T  8365516 tcggtatcggacacgacacgtgtccgacactgggacacgcctaatccgaggagtctccgtgcttcat 8365450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 155 - 221
Target Start/End: Complemental strand, 10339122 - 10339056
Alignment:
Q  155 tcggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    |||||||||||||||| || |||| ||||| ||||||| ||| |||  |||||||||||||||||||    
T  10339122 tcggtgtcggacacgacacatgtccgacactgggacacgcctaatcggaggagtgtccgtgcttcat 10339056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 124 - 221
Target Start/End: Original strand, 28715315 - 28715412
Alignment:
Q  124 aaaatcacaaaatgcagtgtaattatatgtctcggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    ||||| ||| ||| ||||||||||| | || |||||||||||||||| ||||||  ||||| ||||||| ||| || | || ||||| ||||||||||    
T  28715315 aaaatgacataattcagtgtaattacaagtgtcggtgtcggacacgacacgtgttcgacaccgggacacgcctaattcgagaagtgtacgtgcttcat 28715412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 175
Target Start/End: Original strand, 7740660 - 7740712
Alignment:
Q  123 gaaaatcacaaaatgcagtgtaattatatgtctcggtgtcggacacgatacgt 175  Q
    ||||||||||||||  ||||||||||||||| || ||||||||||||| ||||    
T  7740660 gaaaatcacaaaattgagtgtaattatatgtgtcagtgtcggacacgacacgt 7740712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 122 - 170
Target Start/End: Original strand, 19040370 - 19040418
Alignment:
Q  122 agaaaatcacaaaatgcagtgtaattatatgtctcggtgtcggacacga 170  Q
    ||||||||||| ||| |||||||||||||||| || |||||||||||||    
T  19040370 agaaaatcacataattcagtgtaattatatgtgtctgtgtcggacacga 19040418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 180
Target Start/End: Original strand, 30851637 - 30851676
Alignment:
Q  141 tgtaattatatgtctcggtgtcggacacgatacgtgtctg 180  Q
    ||||||||||||| |||||||||||||||| |||||||||    
T  30851637 tgtaattatatgtgtcggtgtcggacacgacacgtgtctg 30851676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 221
Target Start/End: Original strand, 31959220 - 31959267
Alignment:
Q  174 gtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    ||||| ||||| ||||||||||| |||| |||||||||||||||||||    
T  31959220 gtgtccgacaccgggacacacctaatccgaggagtgtccgtgcttcat 31959267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 221
Target Start/End: Complemental strand, 32511707 - 32511608
Alignment:
Q  122 agaaaatcacaaaatgcagtgtaattatatgtctcggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    ||||||||||| ||| ||||||||||||| || | ||||||||| |||| |  |||||||||  ||  ||| ||| |||  |||||||||||||||||||    
T  32511707 agaaaatcacataattcagtgtaattataagtgttggtgtcggatacgacatatgtctgacatcggagcacgcctaatcggaggagtgtccgtgcttcat 32511608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 221
Target Start/End: Original strand, 4877994 - 4878059
Alignment:
Q  155 tcggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    |||||||||||||||| || |||| ||||| || |||| ||| |||| |||||||||||||||||||    
T  4877994 tcggtgtcggacacgacacatgtccgacacagg-acacgcctaatccgaggagtgtccgtgcttcat 4878059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 220
Target Start/End: Complemental strand, 8389457 - 8389411
Alignment:
Q  174 gtgtctgacacggggacacaccttatccaaggagtgtccgtgcttca 220  Q
    ||||| ||||| ||||||||||| |||| ||||||||||||||||||    
T  8389457 gtgtccgacaccgggacacacctaatccgaggagtgtccgtgcttca 8389411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 221
Target Start/End: Complemental strand, 9107367 - 9107301
Alignment:
Q  155 tcggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    |||||||||||||| |   ||||| ||||| ||||||||||| |||| ||||||| |||||||||||    
T  9107367 tcggtgtcggacacaacgtgtgtccgacaccgggacacacctaatccgaggagtgcccgtgcttcat 9107301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 221
Target Start/End: Original strand, 16766759 - 16766825
Alignment:
Q  155 tcggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    |||||||||||||| | ||||||| ||||| ||||||| ||| |||| | || ||||||||||||||    
T  16766759 tcggtgtcggacacaacacgtgtccgacaccgggacacgcctaatccgaagaatgtccgtgcttcat 16766825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 122 - 163
Target Start/End: Complemental strand, 9025535 - 9025494
Alignment:
Q  122 agaaaatcacaaaatgcagtgtaattatatgtctcggtgtcg 163  Q
    ||||||||||| ||| |||||||||||||||| |||||||||    
T  9025535 agaaaatcacataattcagtgtaattatatgtgtcggtgtcg 9025494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 77 - 163
Target Start/End: Original strand, 9027151 - 9027237
Alignment:
Q  77 cggacaagacacggacaccgacacggcgacacggctaannnnnnnagaaaatcacaaaatgcagtgtaattatatgtctcggtgtcg 163  Q
    |||||| ||||||||||| |||||| |||||| |||||       ||| ||||||| ||| | |||||||||||||| |||||||||    
T  9027151 cggacacgacacggacactgacacgccgacaccgctaataatttgagataatcacataattccgtgtaattatatgtgtcggtgtcg 9027237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 61 - 163
Target Start/End: Complemental strand, 10770776 - 10770674
Alignment:
Q  61 ctatgaagcacggatacggacaagacacggacaccgacacggcgacacggctaannnnnnnagaaaatcacaaaatgcagtgtaattatatgtctcggtg 160  Q
    |||||||||||||||||||||| |||| |||||| |||||| | ||||  ||||       | ||||||||| ||| ||||||||||| | || ||||||    
T  10770776 ctatgaagcacggatacggacacgacatggacactgacacgccaacacaactaataatttgaaaaaatcacataattcagtgtaattacaagtgtcggtg 10770677  T
Q  161 tcg 163  Q
    |||    
T  10770676 tcg 10770674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 4e-31; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 77 - 221
Target Start/End: Complemental strand, 5414258 - 5414103
Alignment:
Q  77 cggacaagacacggacaccgacacggcgacacggctaannnnnnnagaaaatcacaaaatgcagtgtaattatatgtctcggtgtcg-----------ga 165  Q
    |||||| ||||||||||| |||||| |||||| |||||       |||||||||||||||||||||||||||||||| |||||||||           ||    
T  5414258 cggacacgacacggacacggacacgccgacacagctaatttttttagaaaatcacaaaatgcagtgtaattatatgtatcggtgtcgtgtcagtgtcgga 5414159  T
Q  166 cacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  5414158 cacgacacgtgtctgacacagggacacaccttatccaaggagtgtccgtgcttcat 5414103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 77 - 221
Target Start/End: Complemental strand, 23293072 - 23292928
Alignment:
Q  77 cggacaagacacggacaccgacacggcgacacggctaannnnnnnagaaaatcacaaaatgcagtgtaattatatgtctcggtgtcggacacgatacgtg 176  Q
    |||||| ||||||||||  |||||| |||||| |||||       | ||||||||| ||| |||| |||||| | || |||||||||||||||| |||||    
T  23293072 cggacacgacacggacaatgacacgccgacacagctaataatttgaaaaaatcacataattcagtataattacaagtgtcggtgtcggacacgacacgtg 23292973  T
Q  177 tctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    || ||||| ||||||| ||| |||| |||||||||||||||||||    
T  23292972 tccgacaccgggacacgcctaatccgaggagtgtccgtgcttcat 23292928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 59 - 218
Target Start/End: Original strand, 49430980 - 49431140
Alignment:
Q  59 atctatgaagcacggatacggacaagacacggacaccgacacggcgacacggctaannnnnnnagaaaa-tcacaaaatgcagtgtaattatatgtctcg 157  Q
    |||||||||||||||| ||||||| ||| ||||||  |||||| |||||| |||||       | |||| ||||| ||| ||||||||||| | || |||    
T  49430980 atctatgaagcacggacacggacacgactcggacagtgacacgccgacacagctaataatttgaaaaaaatcacataattcagtgtaattaaaagtgtcg 49431079  T
Q  158 gtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgctt 218  Q
    ||||||||||||| |||||||  |||| ||||||| |||||||| |||||||||| |||||    
T  49431080 gtgtcggacacgacacgtgtccaacaccgggacacgccttatccgaggagtgtccatgctt 49431140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 122 - 221
Target Start/End: Complemental strand, 19097935 - 19097837
Alignment:
Q  122 agaaaatcacaaaatgcagtgtaattatatgtctcggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    ||||||||||  ||| |||| ||||||||| | ||||||||| ||| || ||||||||||||||||||||| ||||| |||| ||||||| |||||||||    
T  19097935 agaaaatcacgtaattcagtataattatatttgtcggtgtcgaacatgacacgtgtctgacacggggacacgcctta-ccaaagagtgtctgtgcttcat 19097837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 122 - 221
Target Start/End: Original strand, 35161054 - 35161153
Alignment:
Q  122 agaaaatcacaaaatgcagtgtaattatatgtctcggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    ||||||||||| ||| ||||||||||||| || || | ||||||||||| ||||||| ||||| || |||||||| |||| |  ||||||||||||||||    
T  35161054 agaaaatcacataattcagtgtaattataagtatcagagtcggacacgacacgtgtccgacaccggaacacacctaatccgaaaagtgtccgtgcttcat 35161153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 155 - 221
Target Start/End: Original strand, 12323971 - 12324037
Alignment:
Q  155 tcggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    ||||||||||||| || |||||| || |||||| ||||||||||||| |||||||||||||||||||    
T  12323971 tcggtgtcggacatgacacgtgtgtggcacgggaacacaccttatccgaggagtgtccgtgcttcat 12324037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 157 - 221
Target Start/End: Original strand, 848015 - 848079
Alignment:
Q  157 ggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    |||||||||||||| |||||||  |||| ||||||||||| |||||||||||||||||| |||||    
T  848015 ggtgtcggacacgaaacgtgtcgaacaccgggacacacctaatccaaggagtgtccgtgtttcat 848079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 62 - 191
Target Start/End: Complemental strand, 12797438 - 12797310
Alignment:
Q  62 tatgaagcacggatacggacaagacacggacaccgacacggcgacacggctaannnnnnnagaaaatcacaaaatgcagtgtaattatatgtctcggtgt 161  Q
    ||||||||||||||||||| | ||||||||||| |||||| || ||   ||||       | ||||||||| ||| ||||||||||| | || |||||||    
T  12797438 tatgaagcacggatacggatacgacacggacactgacacgccggcaaaactaataatttga-aaaatcacataattcagtgtaattacaagtgtcggtgt 12797340  T
Q  162 cggacacgatacgtgtctgacacggggaca 191  Q
    |||||||||||| |||||||||| ||||||    
T  12797339 cggacacgatacatgtctgacaccgggaca 12797310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 158 - 221
Target Start/End: Complemental strand, 3947766 - 3947703
Alignment:
Q  158 gtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    ||||||||||||| ||||||| |||||  |||||||||| |||| |||||||||||||||||||    
T  3947766 gtgtcggacacgacacgtgtccgacaccaggacacacctaatccgaggagtgtccgtgcttcat 3947703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 139 - 221
Target Start/End: Complemental strand, 2361999 - 2361917
Alignment:
Q  139 agtgtaattatatgtctcggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    |||||||||| | || ||||||||||||||||  |||||||||||| | ||||||||| |||  | |||||||||||||||||    
T  2361999 agtgtaattaaaagtgtcggtgtcggacacgactcgtgtctgacaccgagacacacctaatctgacgagtgtccgtgcttcat 2361917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 155 - 221
Target Start/End: Complemental strand, 30982875 - 30982809
Alignment:
Q  155 tcggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    |||||||| ||||||| ||||||| ||||| ||||||| ||| |||||| |||||||||||||||||    
T  30982875 tcggtgtcagacacgacacgtgtccgacaccgggacacgcctaatccaaagagtgtccgtgcttcat 30982809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 124 - 221
Target Start/End: Original strand, 16073414 - 16073511
Alignment:
Q  124 aaaatcacaaaatgcagtgtaattatatgtctcggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    |||||| || ||| ||||||||||| | || ||||||||||||||||||| |||| |||||   ||||| ||| |||| |||||||||| ||||||||    
T  16073414 aaaatcgcataattcagtgtaattacaagtgtcggtgtcggacacgatacatgtccgacactaagacacgcctaatccgaggagtgtccatgcttcat 16073511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 124 - 221
Target Start/End: Complemental strand, 28964287 - 28964190
Alignment:
Q  124 aaaatcacaaaatgcagtgtaattatatgtctcggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    ||||||||| ||| ||||||||||| | || || ||||||||||||| || | || ||||| ||||||| ||| |||| |||||||||| ||||||||    
T  28964287 aaaatcacataattcagtgtaattacaagtgtctgtgtcggacacgacacatatccgacactgggacacgcctaatccgaggagtgtccatgcttcat 28964190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 122 - 221
Target Start/End: Complemental strand, 8423759 - 8423660
Alignment:
Q  122 agaaaatcacaaaatgcagtgtaattatatgtctcggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    ||||||||||| ||| |||||||||||||  | |||||||||||||||| |  |||| ||||| ||||||| ||| |||  || ||||||||||| ||||    
T  8423759 agaaaatcacataattcagtgtaattataaatgtcggtgtcggacacgacagctgtccgacaccgggacacgcctaatcggagaagtgtccgtgcgtcat 8423660  T

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Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 122 - 196
Target Start/End: Original strand, 9996858 - 9996932
Alignment:
Q  122 agaaaatcacaaaatgcagtgtaattatatgtctcggtgtcggacacgatacgtgtctgacacggggacacacct 196  Q
    ||||||||||| ||| |||| |||||||||||||||||||| ||||  | ||||||| ||||| || ||||||||    
T  9996858 agaaaatcacataattcagtataattatatgtctcggtgtcagacataacacgtgtccgacactggaacacacct 9996932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 163 - 221
Target Start/End: Original strand, 19482738 - 19482796
Alignment:
Q  163 ggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    |||||||| ||||||| ||||| ||||||||||| |||| |||||||| ||||||||||    
T  19482738 ggacacgacacgtgtccgacactgggacacacctaatccgaggagtgttcgtgcttcat 19482796  T

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Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 155 - 221
Target Start/End: Complemental strand, 24613698 - 24613632
Alignment:
Q  155 tcggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    |||||||| ||||||| |||||||||||||  ||||||  || |||| |||||||||||||||||||    
T  24613698 tcggtgtcagacacgacacgtgtctgacaccaggacacgtctaatcctaggagtgtccgtgcttcat 24613632  T

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Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 124 - 178
Target Start/End: Complemental strand, 54580062 - 54580008
Alignment:
Q  124 aaaatcacaaaatgcagtgtaattatatgtctcggtgtcggacacgatacgtgtc 178  Q
    ||||||||| ||| ||||||||||||| || |||||||||||||||| |||||||    
T  54580062 aaaatcacataattcagtgtaattataagtgtcggtgtcggacacgacacgtgtc 54580008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 140 - 221
Target Start/End: Complemental strand, 12895297 - 12895216
Alignment:
Q  140 gtgtaattatatgtctcggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    ||||||||||| || |||||||||||||||| | || || ||||  ||||||| ||| |||| |||||||| ||||||||||    
T  12895297 gtgtaattataagtgtcggtgtcggacacgacatgtatccgacatcgggacacgcctaatccgaggagtgttcgtgcttcat 12895216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 124 - 221
Target Start/End: Complemental strand, 34306843 - 34306746
Alignment:
Q  124 aaaatcacaaaatgcagtgtaattatatgtctcggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    ||||||| | |||| |||||||||| | || |||||||||||||||| ||||||| ||||| | ||||| ||| |||  |||| ||| ||||||||||    
T  34306843 aaaatcagataatgtagtgtaattacaagtgtcggtgtcggacacgacacgtgtccgacaccgagacacgcctaatctgaggaatgttcgtgcttcat 34306746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 124 - 221
Target Start/End: Complemental strand, 715646 - 715547
Alignment:
Q  124 aaaatcacaaaatgcagtgtaattatatgtctcggtgtc--ggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    ||||||||| ||| ||||||||||| | || | ||||||  | |||||| || |||| ||||| ||||||| ||| |||| |||||||||||||||||||    
T  715646 aaaatcacataattcagtgtaattacaagtgttggtgtcttgtacacgacacatgtccgacacagggacacgcctaatccgaggagtgtccgtgcttcat 715547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 124 - 221
Target Start/End: Complemental strand, 752972 - 752873
Alignment:
Q  124 aaaatcacaaaatgcagtgtaattatatgtctcggtgtc--ggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    ||||||||| ||| ||||||||||| | || | ||||||  | |||||| || |||| ||||| ||||||| ||| |||| |||||||||||||||||||    
T  752972 aaaatcacataattcagtgtaattacaagtgttggtgtcttgtacacgacacatgtccgacacagggacacgcctaatccgaggagtgtccgtgcttcat 752873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 221
Target Start/End: Complemental strand, 46083982 - 46083922
Alignment:
Q  161 tcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    |||||||||| ||||||||||| ||||||||| ||||||   |||||||||| ||||||||    
T  46083982 tcggacacgacacgtgtctgacgcggggacacgccttataagaggagtgtccatgcttcat 46083922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 221
Target Start/End: Complemental strand, 53381599 - 53381532
Alignment:
Q  155 tcggtgtcggacac-gatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    |||||||||||||| ||  ||| || ||||| ||||||||||| |||| |||||||||||||||||||    
T  53381599 tcggtgtcggacactgacgcgtatccgacaccgggacacacctaatccgaggagtgtccgtgcttcat 53381532  T

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Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 184
Target Start/End: Complemental strand, 8402783 - 8402721
Alignment:
Q  122 agaaaatcacaaaatgcagtgtaattatatgtctcggtgtcggacacgatacgtgtctgacac 184  Q
    ||||||||| | ||| ||||||||||||||||||| ||||| ||||||| || |||| |||||    
T  8402783 agaaaatcatataattcagtgtaattatatgtctcagtgtcagacacgacacttgtccgacac 8402721  T

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Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 103
Target Start/End: Original strand, 29205405 - 29205451
Alignment:
Q  58 aatctatgaagcacggatacggaca-agacacggacaccgacacggc 103  Q
    |||||||||||||||||||||||||  |||||||||||| |||||||    
T  29205405 aatctatgaagcacggatacggacatggacacggacaccaacacggc 29205451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 170
Target Start/End: Complemental strand, 40179675 - 40179629
Alignment:
Q  124 aaaatcacaaaatgcagtgtaattatatgtctcggtgtcggacacga 170  Q
    ||||||||| ||| |||||||||||||||  ||||||||||||||||    
T  40179675 aaaatcacataattcagtgtaattatatgcgtcggtgtcggacacga 40179629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 221
Target Start/End: Original strand, 40784028 - 40784070
Alignment:
Q  179 tgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    |||||| ||||||||||| |||| |||||||||||||||||||    
T  40784028 tgacaccgggacacacctaatccgaggagtgtccgtgcttcat 40784070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 124 - 221
Target Start/End: Original strand, 4157169 - 4157266
Alignment:
Q  124 aaaatcacaaaatgcagtgtaattatatgtctcggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    ||||||||| |||  |||| ||||| | || |||||||||||||||| || |||| ||||| | || |||||| || | ||||||||| |||||||||    
T  4157169 aaaatcacataatttagtgcaattacaagtgtcggtgtcggacacgacacatgtccgacaccgagaaacacctaattcgaggagtgtctgtgcttcat 4157266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 132 - 173
Target Start/End: Complemental strand, 20950458 - 20950417
Alignment:
Q  132 aaaatgcagtgtaattatatgtctcggtgtcggacacgatac 173  Q
    ||||| |||||||||||||||| |||||||| ||||||||||    
T  20950458 aaaattcagtgtaattatatgtgtcggtgtcagacacgatac 20950417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 124 - 221
Target Start/End: Complemental strand, 35158024 - 35157927
Alignment:
Q  124 aaaatcacaaaatgcagtgtaattatatgtctcggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    ||||||||| |||  |||||||||||| || |||||||| ||||||| || ||||  |||| || |||| | | |||| || ||||||||||||||||    
T  35158024 aaaatcacataatttagtgtaattataagtgtcggtgtctgacacgacacatgtccaacaccggaacacgcttaatccgagaagtgtccgtgcttcat 35157927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 124 - 181
Target Start/End: Complemental strand, 36509131 - 36509074
Alignment:
Q  124 aaaatcacaaaatgcagtgtaattatatgtctcggtgtcggacacgatacgtgtctga 181  Q
    ||||||||| |||  ||||||||||||||| |||| ||||||| ||| ||||||||||    
T  36509131 aaaatcacataatcaagtgtaattatatgtgtcggcgtcggacgcgacacgtgtctga 36509074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 220
Target Start/End: Original strand, 28084592 - 28084640
Alignment:
Q  172 acgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttca 220  Q
    ||||||| ||||| ||||||| ||| |||| ||||||||||||||||||    
T  28084592 acgtgtccgacactgggacacgcctaatccgaggagtgtccgtgcttca 28084640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 192
Target Start/End: Original strand, 29205464 - 29205532
Alignment:
Q  124 aaaatcacaaaatgcagtgtaattatatgtctcggtgtcggacacgatacgtgtctgacacggggacac 192  Q
    ||||||||| ||| ||||||||||| | || ||||||| |||||||| || |||| ||||| |||||||    
T  29205464 aaaatcacataattcagtgtaattacaagtgtcggtgttggacacgacacatgtccgacaccgggacac 29205532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 9e-26; HSPs: 30)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 140 - 219
Target Start/End: Complemental strand, 30099061 - 30098982
Alignment:
Q  140 gtgtaattatatgtctcggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttc 219  Q
    |||||||||||||| ||||||||||| |||| ||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  30099061 gtgtaattatatgtgtcggtgtcggatacgacacgtgtctgacacggggacacgccttatccaaggagtgttcgtgcttc 30098982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 84 - 221
Target Start/End: Original strand, 6401478 - 6401626
Alignment:
Q  84 gacacggacaccgacacggcgacacggctaannnnnnnagaaaatcacaaaatgcagtgtaattatatgtctcggtgt-----------cggacacgata 172  Q
    |||||||||||||||||| ||||||  ||||       ||||||||||||||| |||||||||||||||| |||||||           ||||||||| |    
T  6401478 gacacggacaccgacacgccgacacaactaaattttttagaaaatcacaaaatacagtgtaattatatgtgtcggtgtcgtgtcagtgtcggacacgaca 6401577  T
Q  173 cgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    ||||||||||||||||| || ||||||||||||||||||||||||||||    
T  6401578 cgtgtctgacacggggatacgccttatccaaggagtgtccgtgcttcat 6401626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 124 - 221
Target Start/End: Complemental strand, 21576784 - 21576687
Alignment:
Q  124 aaaatcacaaaatgcagtgtaattatatgtctcggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    ||||||||| ||| ||||||||||| | || ||| |||||||||||| ||||||||||||| ||||||| ||| |||| |||||||||||||||||||    
T  21576784 aaaatcacataattcagtgtaattacaagtgtcgatgtcggacacgacacgtgtctgacactgggacacgcctaatccgaggagtgtccgtgcttcat 21576687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 138 - 210
Target Start/End: Original strand, 26312803 - 26312875
Alignment:
Q  138 cagtgtaattatatgtctcggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgt 210  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||  |||||||||| |||| ||||||||    
T  26312803 cagtgtaattatatgtatcggtgtcggacacgatacgtgtctgacaccaggacacacctaatccgaggagtgt 26312875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 122 - 221
Target Start/End: Original strand, 42029770 - 42029869
Alignment:
Q  122 agaaaatcacaaaatgcagtgtaattatatgtctcggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    ||||||||||| ||| || ||||||||||||| |||||||||||||||| || |||||| ||||  ||||| |||||||| |||||||||||||| ||||    
T  42029770 agaaaatcacataattcaatgtaattatatgtatcggtgtcggacacgacacatgtctgtcacgtagacacgccttatccgaggagtgtccgtgcatcat 42029869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 122 - 221
Target Start/End: Original strand, 21814279 - 21814389
Alignment:
Q  122 agaaaatcacaaaatgcagtgtaattatatgtctcgg-----------tgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgt 210  Q
    |||||||||||||||||||||||||||||||| ||||           |||||||||||| ||||||||| ||||||||||| ||||||||||||| |||    
T  21814279 agaaaatcacaaaatgcagtgtaattatatgtgtcggtgtcgtgtcggtgtcggacacgacacgtgtctggcacggggacacgccttatccaaggaatgt 21814378  T
Q  211 ccgtgcttcat 221  Q
     ||||||||||    
T  21814379 tcgtgcttcat 21814389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 77 - 221
Target Start/End: Complemental strand, 21191142 - 21190998
Alignment:
Q  77 cggacaagacacggacaccgacacggcgacacggctaannnnnnnagaaaatcacaaaatgcagtgtaattatatgtctcggtgtcggacacgatacgtg 176  Q
    |||||| ||||||||||| |||| | |||||| |||||       | ||||||||| ||| ||||||||||| | || |||||||||||||| | |||||    
T  21191142 cggacacgacacggacactgacatgccgacacagctaataatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtcggacacaacacgtg 21191043  T
Q  177 tctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    || ||| | ||||||| ||| |||| |||||||||||||||||||    
T  21191042 tccgactccgggacacgcctaatccgaggagtgtccgtgcttcat 21190998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 122 - 221
Target Start/End: Complemental strand, 30502429 - 30502330
Alignment:
Q  122 agaaaatcacaaaatgcagtgtaattatatgtctcggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    ||||||||||  ||| |||||||||||||||| |||||||||||||||| || |||| ||||| ||||||  ||| ||||||||| ||| ||||||||||    
T  30502429 agaaaatcacttaattcagtgtaattatatgtgtcggtgtcggacacgacacatgtccgacactgggacatgcctaatccaaggattgttcgtgcttcat 30502330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 122 - 221
Target Start/End: Complemental strand, 30542772 - 30542673
Alignment:
Q  122 agaaaatcacaaaatgcagtgtaattatatgtctcggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    ||||||||||  ||| |||||||||||||||| |||||||||||||||| || |||| ||||| ||||||  ||| ||||||||| ||| ||||||||||    
T  30542772 agaaaatcacttaattcagtgtaattatatgtgtcggtgtcggacacgacacatgtccgacactgggacatgcctaatccaaggattgttcgtgcttcat 30542673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 124 - 221
Target Start/End: Original strand, 43564901 - 43564998
Alignment:
Q  124 aaaatcacaaaatgcagtgtaattatatgtctcggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    ||||||||| |||  |||||||||||| || |||||||||||||||| | ||||| ||| | ||||||| ||| |||| || ||||||||||||||||    
T  43564901 aaaatcacataatttagtgtaattataagtgtcggtgtcggacacgacatgtgtccgacgccgggacacgcctaatccgagaagtgtccgtgcttcat 43564998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 122 - 221
Target Start/End: Complemental strand, 28588715 - 28588616
Alignment:
Q  122 agaaaatcacaaaatgcagtgtaattatatgtctcggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    ||||||||||| ||| ||||||||||||| || |||||||||||||||| || | ||||||||  |||||| | | |||| | |||||||| ||||||||    
T  28588715 agaaaatcacataattcagtgtaattataggtgtcggtgtcggacacgacacatatctgacaccaggacacgcttaatccgaagagtgtccatgcttcat 28588616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 122 - 218
Target Start/End: Complemental strand, 21194164 - 21194068
Alignment:
Q  122 agaaaatcacaaaatgcagtgtaattatatgtctcggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgctt 218  Q
    |||||||||||  || ||||||||||||| || | ||||| |||||||| || |||| ||||| ||| ||| ||| |||| ||||||||||||||||    
T  21194164 agaaaatcacatcattcagtgtaattataggtattggtgttggacacgacacatgtcagacaccggggcacgcctaatccgaggagtgtccgtgctt 21194068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 148 - 220
Target Start/End: Complemental strand, 39268613 - 39268541
Alignment:
Q  148 atatgtctcggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttca 220  Q
    |||||| ||||||| |||||||| | ||||| ||||| ||||||| ||| |||| ||||||||||||||||||    
T  39268613 atatgtgtcggtgttggacacgacatgtgtccgacactgggacacgcctaatccgaggagtgtccgtgcttca 39268541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 122 - 221
Target Start/End: Original strand, 17123066 - 17123164
Alignment:
Q  122 agaaaatcacaaaatgcagtgtaattatatgtctcggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    ||||||||||| |||  |||  |||||||| | ||||||| |||||||| || |||| |||||||| |||| ||| |||| |||||||||||||||||||    
T  17123066 agaaaatcacataatcaagtacaattatatatgtcggtgttggacacgaaacatgtccgacacggg-acacgcctaatccgaggagtgtccgtgcttcat 17123164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 158 - 221
Target Start/End: Original strand, 30098391 - 30098454
Alignment:
Q  158 gtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    ||||||||||||| ||||||| |||||  |||||||||| |||| |||| ||||||||||||||    
T  30098391 gtgtcggacacgacacgtgtcagacaccaggacacacctaatccgaggaatgtccgtgcttcat 30098454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 155 - 221
Target Start/End: Original strand, 21522812 - 21522878
Alignment:
Q  155 tcggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    |||||||||||||||| ||||||| | ||| ||||||| ||| |||||| |||||||||||| ||||    
T  21522812 tcggtgtcggacacgacacgtgtccggcaccgggacacgcctaatccaaagagtgtccgtgcatcat 21522878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 155 - 221
Target Start/End: Original strand, 21533378 - 21533444
Alignment:
Q  155 tcggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    |||||||||||||||| ||||||| | ||| ||||||| ||| |||||| |||||||||||| ||||    
T  21533378 tcggtgtcggacacgacacgtgtccggcaccgggacacgcctaatccaaagagtgtccgtgcatcat 21533444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 155 - 221
Target Start/End: Original strand, 21542092 - 21542158
Alignment:
Q  155 tcggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    |||||||||||||||| ||||||| ||||| ||||||| ||  ||||||||| ||||||||| ||||    
T  21542092 tcggtgtcggacacgacacgtgtccgacaccgggacacgccgaatccaaggaatgtccgtgcatcat 21542158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 122 - 221
Target Start/End: Complemental strand, 18421882 - 18421779
Alignment:
Q  122 agaaaatcacaaaatgcagtgtaattatatgtctcggtgtcggacacgatacgtgtctgacacggggac--acac--cttatccaaggagtgtccgtgct 217  Q
    ||||||||||| ||| |||||||||||||||| |||| ||||||||||| || |||| | ||| |||||  ||||  || |||| ||||||||| |||||    
T  18421882 agaaaatcacataatccagtgtaattatatgtgtcggcgtcggacacgacacatgtccggcaccgggactgacacgtctaatccgaggagtgtctgtgct 18421783  T
Q  218 tcat 221  Q
    ||||    
T  18421782 tcat 18421779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 159 - 220
Target Start/End: Complemental strand, 19453059 - 19452998
Alignment:
Q  159 tgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttca 220  Q
    |||||||||||| || ||||| |||||| || || |||||||||||||| ||||||||||||    
T  19453059 tgtcggacacgacacatgtctcacacggagatacgccttatccaaggagcgtccgtgcttca 19452998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 219
Target Start/End: Original strand, 4105282 - 4105374
Alignment:
Q  127 atcacaaaatgcagtgtaattatatgtctcggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttc 219  Q
    |||||| ||| ||||||||||| | || | ||| || ||| ||||| |||||||| || ||||||| ||| |||| |||||||||||||||||    
T  4105282 atcacataattcagtgtaattacaagtgtaggtatcagactcgatatgtgtctgatactgggacacgcctaatccgaggagtgtccgtgcttc 4105374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 221
Target Start/End: Original strand, 27932253 - 27932352
Alignment:
Q  122 agaaaatcacaaaatgcagtgtaattatatgtctcggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    ||||||| ||| ||| ||||||||||| |  ||| |||||||||||||| ||||||| |||||  |||||| ||| || | ||||||||  |||||||||    
T  27932253 agaaaattacataattcagtgtaattacaaatcttggtgtcggacacgacacgtgtcggacaccaggacacgcctaattcgaggagtgtttgtgcttcat 27932352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 221
Target Start/End: Original strand, 31084382 - 31084445
Alignment:
Q  158 gtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    ||||||||||||| ||||||| ||||| ||||||  ||| |||| ||||||||||||| |||||    
T  31084382 gtgtcggacacgacacgtgtccgacactgggacatgcctaatccgaggagtgtccgtggttcat 31084445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 221
Target Start/End: Original strand, 43001859 - 43001922
Alignment:
Q  158 gtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    ||||||||||||| |||||||  ||||  |||||| ||| |||| |||||||||||||||||||    
T  43001859 gtgtcggacacgacacgtgtcaaacacctggacacgcctaatccgaggagtgtccgtgcttcat 43001922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 191
Target Start/End: Complemental strand, 23012430 - 23012380
Alignment:
Q  141 tgtaattatatgtctcggtgtcggacacgatacgtgtctgacacggggaca 191  Q
    ||||||||||||| ||||||| |||||||| || |||||||||| ||||||    
T  23012430 tgtaattatatgtgtcggtgttggacacgacacatgtctgacaccgggaca 23012380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 221
Target Start/End: Original strand, 39698603 - 39698669
Alignment:
Q  155 tcggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    |||||||||||||||| | || || ||||| | ||||| ||| |||| |||||||||||||||||||    
T  39698603 tcggtgtcggacacgacatgtatccgacaccgagacacgcctaatccgaggagtgtccgtgcttcat 39698669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 122 - 163
Target Start/End: Original strand, 3966521 - 3966562
Alignment:
Q  122 agaaaatcacaaaatgcagtgtaattatatgtctcggtgtcg 163  Q
    ||||||||||| ||| |||||||||||||||| |||||||||    
T  3966521 agaaaatcacacaattcagtgtaattatatgtgtcggtgtcg 3966562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 124 - 221
Target Start/End: Original strand, 42893380 - 42893477
Alignment:
Q  124 aaaatcacaaaatgcagtgtaattatatgtctcggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    ||||||||| ||| ||||||||||| | || |||||||| ||||| | ||||||| |||||  |||||| ||| ||   |||||||||| ||||||||    
T  42893380 aaaatcacataatccagtgtaattacaagtgtcggtgtcagacacaacacgtgtccgacaccaggacacgcctaatatgaggagtgtccatgcttcat 42893477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 221
Target Start/End: Original strand, 14873535 - 14873639
Alignment:
Q  122 agaaaatcacaaaatgcagtgtaattatatgtctcggtgtc-----ggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgc 216  Q
    |||||| |||| |||  ||||||||||||||| ||||||||     |||| | | |||||||  |||| ||||||| ||| |||| ||||||||||||||    
T  14873535 agaaaagcacataatttagtgtaattatatgtgtcggtgtcatgtcggacgcaacacgtgtccaacaccgggacacgcctaatccgaggagtgtccgtgc 14873634  T
Q  217 ttcat 221  Q
    |||||    
T  14873635 ttcat 14873639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 221
Target Start/End: Complemental strand, 32630757 - 32630677
Alignment:
Q  141 tgtaattatatgtctcggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    ||||||||||||| || |||||||| |||| ||||||| ||||  | ||||||||| || | |||||||||  ||||||||    
T  32630757 tgtaattatatgtgtcagtgtcggatacgacacgtgtccgacattgagacacacctaattcgaggagtgtctatgcttcat 32630677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0652 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 124 - 221
Target Start/End: Complemental strand, 501 - 404
Alignment:
Q  124 aaaatcacaaaatgcagtgtaattatatgtctcggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    ||||||||||||| ||||||||||| | || ||||||||||||||||  |||||| ||||| ||||||||||| |||| |||||||||||||||||||    
T  501 aaaatcacaaaattcagtgtaattacaagtgtcggtgtcggacacgacgcgtgtccgacaccgggacacacctaatccgaggagtgtccgtgcttcat 404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 2e-23; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 122 - 221
Target Start/End: Complemental strand, 18213074 - 18212975
Alignment:
Q  122 agaaaatcacaaaatgcagtgtaattatatgtctcggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    ||||||||||| |||  ||||||||||||||| ||||||||||||||||  | | |||||||||||||||| |||||||| ||||||||| |||||||||    
T  18213074 agaaaatcacataatttagtgtaattatatgtgtcggtgtcggacacgacccctttctgacacggggacacgccttatccgaggagtgtctgtgcttcat 18212975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 122 - 220
Target Start/End: Original strand, 39138462 - 39138560
Alignment:
Q  122 agaaaatcacaaaatgcagtgtaattatatgtctcggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttca 220  Q
    ||||||||||| ||| |||||||||||||| | ||||||||||||||||||| ||||| |||||||||||| |||||||| | |||| || ||||||||    
T  39138462 agaaaatcacataattcagtgtaattatatatgtcggtgtcggacacgatacatgtctaacacggggacacgccttatcccaagagtatctgtgcttca 39138560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 122 - 221
Target Start/End: Complemental strand, 32287504 - 32287405
Alignment:
Q  122 agaaaatcacaaaatgcagtgtaattatatgtctcggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    ||||||||||| ||| ||||| || ||||||| ||||||||||||| || | ||||| ||||| ||||||||||| |||| |||||||||||||||||||    
T  32287504 agaaaatcacataattcagtgcaagtatatgtgtcggtgtcggacatgacaagtgtccgacaccgggacacacctaatccgaggagtgtccgtgcttcat 32287405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 124 - 221
Target Start/End: Original strand, 15680829 - 15680926
Alignment:
Q  124 aaaatcacaaaatgcagtgtaattatatgtctcggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    ||||||||| |||  |||||||||||| || |||||||||||||||| ||||||| ||||| | |||||  || || | |||||||||||||||||||    
T  15680829 aaaatcacataatttagtgtaattataagtgtcggtgtcggacacgacacgtgtccgacaccgagacacgtctaattcgaggagtgtccgtgcttcat 15680926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 158 - 221
Target Start/End: Complemental strand, 5409836 - 5409773
Alignment:
Q  158 gtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    ||||||||||||| ||||||| ||||| ||||||| ||| |||| |||||||||||||||||||    
T  5409836 gtgtcggacacgacacgtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcat 5409773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 158 - 221
Target Start/End: Original strand, 9778559 - 9778622
Alignment:
Q  158 gtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    ||||||||||| | ||||||| ||||| ||||||| ||| ||||||||||||||||||||||||    
T  9778559 gtgtcggacacaacacgtgtccgacaccgggacacgcctaatccaaggagtgtccgtgcttcat 9778622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 122 - 221
Target Start/End: Original strand, 20549809 - 20549908
Alignment:
Q  122 agaaaatcacaaaatgcagtgtaattatatgtctcggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    ||||||||||  ||| |||||||||||||||| |||||||||||||| | || |||| ||||  | ||||| ||| |||| ||||||| |||||||||||    
T  20549809 agaaaatcacgtaattcagtgtaattatatgtgtcggtgtcggacacaacacatgtccgacaatgagacacgcctaatccgaggagtgcccgtgcttcat 20549908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 122 - 221
Target Start/End: Original strand, 21880170 - 21880269
Alignment:
Q  122 agaaaatcacaaaatgcagtgtaattatatgtctcggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    ||||||| ||| ||| ||||||||||| | || |||||||||||||||| || |||| |||||  |||||| ||| |||| || ||||||||||||||||    
T  21880170 agaaaattacataattcagtgtaattacaagtgtcggtgtcggacacgacacatgtccgacaccaggacacgcctaatccgagaagtgtccgtgcttcat 21880269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 78 - 221
Target Start/End: Complemental strand, 43027554 - 43027406
Alignment:
Q  78 ggacaagacacggacaccgacacggcgacacggctaannnnnnnagaaaatcacaaaatgcagtgtaattatatgtctcggtgtcg-----gacacgata 172  Q
    ||||| ||||||||||| ||||||||||| | |||||       | ||||||||| |||||||||||| || | || |||||||||     ||||||| |    
T  43027554 ggacacgacacggacactgacacggcgacccagctaataatttgaaaaaatcacataatgcagtgtaaatacaagtgtcggtgtcgtgtcagacacgaca 43027455  T
Q  173 cgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    |||||| ||||| ||||||| ||| |||| | |||||||||||||||||    
T  43027454 cgtgtccgacaccgggacacgcctaatccgatgagtgtccgtgcttcat 43027406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 79 - 221
Target Start/End: Original strand, 598183 - 598325
Alignment:
Q  79 gacaagacacggacaccgacacggcgacacggctaannnnnnnagaaaatcacaaaatgcagtgtaattatatgtctcggtgtcggacacgatacgtgtc 178  Q
    |||| ||||||||||| |||||  |||||| |||||       ||||||||||  |||  | ||||||| || || |||||||| ||||||| |||||||    
T  598183 gacatgacacggacactgacacatcgacaccgctaataatttaagaaaatcacgtaattaaatgtaattgtaagtgtcggtgtcagacacgacacgtgtc 598282  T
Q  179 tgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
     ||||| ||||||| ||| |||| || ||||||||||||||||    
T  598283 cgacaccgggacacgcctaatccgagaagtgtccgtgcttcat 598325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 122 - 212
Target Start/End: Original strand, 12278853 - 12278943
Alignment:
Q  122 agaaaatcacaaaatgcagtgtaattatatgtctcggtgtcggacacgata-cgtgtctgacacggggacacaccttatccaaggagtgtcc 212  Q
    ||||||| ||| ||| |||||||||||||||| ||| |||||||||| |   |||||||||||| ||||||||||| |||| ||||||||||    
T  12278853 agaaaatgacataattcagtgtaattatatgtgtcg-tgtcggacaccaacgcgtgtctgacaccgggacacacctaatcctaggagtgtcc 12278943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 155 - 221
Target Start/End: Original strand, 24339704 - 24339770
Alignment:
Q  155 tcggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    |||||||||||||||| |||| || ||||| ||||||| ||| |||| ||||||| |||||||||||    
T  24339704 tcggtgtcggacacgacacgtatccgacaccgggacacgcctaatccgaggagtgcccgtgcttcat 24339770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 122 - 221
Target Start/End: Original strand, 1401043 - 1401140
Alignment:
Q  122 agaaaatcacaaaatgcagtgtaattatatgtctcggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    ||||| ||||| ||| ||||||||||||| || |||||||| ||||||  || |||| ||||  ||||||||||| |||  |||||||||| ||||||||    
T  1401043 agaaactcacataattcagtgtaattataagtatcggtgtccgacacg--acatgtccgacatcgggacacacctaatctgaggagtgtccatgcttcat 1401140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 122 - 166
Target Start/End: Original strand, 9482952 - 9482996
Alignment:
Q  122 agaaaatcacaaaatgcagtgtaattatatgtctcggtgtcggac 166  Q
    ||||||||||| ||| |||||||||||||||| ||||||||||||    
T  9482952 agaaaatcacacaattcagtgtaattatatgtgtcggtgtcggac 9482996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 57 - 101
Target Start/End: Original strand, 12289066 - 12289110
Alignment:
Q  57 caatctatgaagcacggatacggacaagacacggacaccgacacg 101  Q
    ||||||||||||||||||||| ||||  |||||||||||||||||    
T  12289066 caatctatgaagcacggatacagacacaacacggacaccgacacg 12289110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 221
Target Start/End: Complemental strand, 32094020 - 32093956
Alignment:
Q  158 gtgtcggacacgatacgtgtctgaca-cggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    ||||||||||||| ||||||| |||| ||||||||| ||| |||| |||||||| ||||||||||    
T  32094020 gtgtcggacacgacacgtgtccgacaccggggacacgcctaatccgaggagtgttcgtgcttcat 32093956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 62 - 150
Target Start/End: Original strand, 43249950 - 43250039
Alignment:
Q  62 tatgaagcacggatac-ggacaagacacggacaccgacacggcgacacggctaannnnnnnagaaaatcacaaaatgcagtgtaattata 150  Q
    ||||||||||||| || ||||||||||||||||| |||||| |||||||| |||       ||||||| ||| ||| |||||||||||||    
T  43249950 tatgaagcacggacaccggacaagacacggacactgacacgccgacacggataataatttgagaaaatgacataatacagtgtaattata 43250039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 162
Target Start/End: Original strand, 19206004 - 19206108
Alignment:
Q  59 atctatgaagcacggatacg-gacaagacacggacaccgacacggcgacacggctaannnnnnnagaaaatcacaaaatgcagtgtaattatatgtctcg 157  Q
    |||||| ||||||||||||  |||| |||||||||||| ||||| |||||| |||||       ||||||||||| ||| || | ||||||||||| |||    
T  19206004 atctattaagcacggataccagacacgacacggacaccaacacgccgacaccgctaataatttgagaaaatcacataattcattataattatatgtgtcg 19206103  T
Q  158 gtgtc 162  Q
    |||||    
T  19206104 gtgtc 19206108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 192
Target Start/End: Original strand, 5835265 - 5835335
Alignment:
Q  122 agaaaatcacaaaatgcagtgtaattatatgtctcggtgtcggacacgatacgtgtctgacacggggacac 192  Q
    ||||||| ||| ||| |||||||||||||||| |||||||| |||| || | |||||||| || |||||||    
T  5835265 agaaaataacataattcagtgtaattatatgtgtcggtgtcagacatgacatgtgtctgataccgggacac 5835335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 221
Target Start/End: Original strand, 21864843 - 21864925
Alignment:
Q  139 agtgtaattatatgtctcggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    |||||||||| | || ||| |||||||||||| ||||||| ||||| |||||||  || || | ||||||||| |||||||||    
T  21864843 agtgtaattacaagtgtcgctgtcggacacgacacgtgtccgacaccgggacacgtctaattcgaggagtgtctgtgcttcat 21864925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 221
Target Start/End: Original strand, 25822717 - 25822783
Alignment:
Q  155 tcggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    ||||| |||||||||| ||||||||||||  ||||||  ||| ||| |||||||||||||| |||||    
T  25822717 tcggtatcggacacgacacgtgtctgacatcgggacatgcctaatctaaggagtgtccgtgtttcat 25822783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 212
Target Start/End: Complemental strand, 27093454 - 27093364
Alignment:
Q  122 agaaaatcacaaaatgcagtgtaattatatgtctcggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtcc 212  Q
    ||||||||||| |||  ||||||||||||||  |||||||  ||||||| | ||||| |||||  |||||||||| |||| | ||||||||    
T  27093454 agaaaatcacataatttagtgtaattatatgcgtcggtgttagacacgacatgtgtccgacactaggacacacctaatccgatgagtgtcc 27093364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 212
Target Start/End: Original strand, 27184847 - 27184937
Alignment:
Q  122 agaaaatcacaaaatgcagtgtaattatatgtctcggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtcc 212  Q
    ||||||||||| |||  ||||||||||||||  |||||||  ||||||| | ||||| |||||  |||||||||| |||| | ||||||||    
T  27184847 agaaaatcacataatttagtgtaattatatgcgtcggtgttagacacgacatgtgtccgacactaggacacacctaatccgatgagtgtcc 27184937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 160 - 221
Target Start/End: Original strand, 17852056 - 17852117
Alignment:
Q  160 gtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    |||||||| || ||||||| ||||| | ||||||||| || | |||||||||||||||||||    
T  17852056 gtcggacatgacacgtgtccgacaccgagacacacctaattcgaggagtgtccgtgcttcat 17852117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 122 - 163
Target Start/End: Complemental strand, 22602751 - 22602710
Alignment:
Q  122 agaaaatcacaaaatgcagtgtaattatatgtctcggtgtcg 163  Q
    ||||||||||| ||| |||||||||||||||| |||||||||    
T  22602751 agaaaatcacataattcagtgtaattatatgtgtcggtgtcg 22602710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 63 - 108
Target Start/End: Original strand, 28401102 - 28401147
Alignment:
Q  63 atgaagcacggatacggacaagacacggacaccgacacggcgacac 108  Q
    |||||||||||||||||||| ||||||| |||| ||||| ||||||    
T  28401102 atgaagcacggatacggacacgacacgggcaccaacacgtcgacac 28401147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 220
Target Start/End: Complemental strand, 8842322 - 8842282
Alignment:
Q  180 gacacggggacacaccttatccaaggagtgtccgtgcttca 220  Q
    ||||| ||||||| ||| |||||||||||||||||||||||    
T  8842322 gacaccgggacacgcctaatccaaggagtgtccgtgcttca 8842282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 92
Target Start/End: Original strand, 11700763 - 11700799
Alignment:
Q  56 acaatctatgaagcacggatacggacaagacacggac 92  Q
    |||| |||||||||||||||||||||| |||||||||    
T  11700763 acaacctatgaagcacggatacggacacgacacggac 11700799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 114
Target Start/End: Original strand, 24105644 - 24105688
Alignment:
Q  70 acggatacggacaagacacggacaccgacacggcgacacggctaa 114  Q
    ||||||||||||| ||||||||||| |||||| |||||| |||||    
T  24105644 acggatacggacacgacacggacactgacacgccgacacagctaa 24105688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0306 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 155 - 221
Target Start/End: Original strand, 13457 - 13523
Alignment:
Q  155 tcggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    |||||||||||||||| ||| |||||||||  |||||||||| ||||||||||||||||||||||||    
T  13457 tcggtgtcggacacgacacgcgtctgacactaggacacacctaatccaaggagtgtccgtgcttcat 13523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 155 - 221
Target Start/End: Complemental strand, 21870 - 21804
Alignment:
Q  155 tcggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    |||||||||||||||| ||| |||||||||  |||||||||| ||||||||||||||||||||||||    
T  21870 tcggtgtcggacacgacacgcgtctgacactaggacacacctaatccaaggagtgtccgtgcttcat 21804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0623 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: scaffold0623
Description:

Target: scaffold0623; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 122 - 221
Target Start/End: Complemental strand, 6037 - 5927
Alignment:
Q  122 agaaaatcacaaaatgcagtgtaattatatgtctcggtgtcgga-----------cacgatacgtgtctgacacggggacacaccttatccaaggagtgt 210  Q
    |||||||||||||||||||||||||||||||| ||||||||| |           ||||| ||||||||||||| | ||||| |||||||||||||||||    
T  6037 agaaaatcacaaaatgcagtgtaattatatgtgtcggtgtcgtatcggtgtcgaacacgacacgtgtctgacacagagacacgccttatccaaggagtgt 5938  T
Q  211 ccgtgcttcat 221  Q
    |||||| ||||    
T  5937 ccgtgcctcat 5927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 77 - 163
Target Start/End: Original strand, 9871 - 9957
Alignment:
Q  77 cggacaagacacggacaccgacacggcgacacggctaannnnnnnagaaaatcacaaaatgcagtgtaattatatgtctcggtgtcg 163  Q
    |||||| |||| ||||||||||||| |||||| |||||       ||||||||| |||||||||||||||||||||| |||||||||    
T  9871 cggacacgacatggacaccgacacgccgacacagctaatttttttagaaaatcataaaatgcagtgtaattatatgtgtcggtgtcg 9957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 124 - 220
Target Start/End: Original strand, 70298 - 70394
Alignment:
Q  124 aaaatcacaaaatgcagtgtaattatatgtctcggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttca 220  Q
    ||||| ||| ||| ||||||||||||| || |||||||||||||||| ||||||| |||||  |||||  ||| |||| | |||||| |||||||||    
T  70298 aaaataacataattcagtgtaattataagtgtcggtgtcggacacgacacgtgtccgacaccaggacatgcctaatccgatgagtgttcgtgcttca 70394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 157 - 221
Target Start/End: Original strand, 241658 - 241722
Alignment:
Q  157 ggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    |||||||||||||| ||||||| ||||| ||||||| ||| |||| || ||||||||||||||||    
T  241658 ggtgtcggacacgacacgtgtccgacaccgggacacgcctaatccgagaagtgtccgtgcttcat 241722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 114
Target Start/End: Original strand, 241544 - 241604
Alignment:
Q  55 tacaatctatgaagcacggatac-ggacaagacacggacaccgacacggcgacacggctaa 114  Q
    |||||||||||||||||||| || ||||| ||||||||||| |||||| |||||| |||||    
T  241544 tacaatctatgaagcacggacaccggacacgacacggacactgacacgccgacacagctaa 241604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 236964 - 236916
Alignment:
Q  173 cgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    |||||||||||| ||||||||||| |||  ||||||||| |||||||||    
T  236964 cgtgtctgacaccgggacacacctaatctgaggagtgtctgtgcttcat 236916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0361 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 124 - 221
Target Start/End: Original strand, 14550 - 14644
Alignment:
Q  124 aaaatcacaaaatgcagtgtaattatatgtctcggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    ||||||||| ||| ||||||||||| | ||   |||||||||||||| ||||||| ||||| | ||||| ||| ||| ||||||||| ||||||||||    
T  14550 aaaatcacataattcagtgtaattacaagt---ggtgtcggacacgacacgtgtccgacaccgagacacgcctaatcgaaggagtgtacgtgcttcat 14644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 221
Target Start/End: Complemental strand, 45555 - 45472
Alignment:
Q  138 cagtgtaattatatgtctcggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    ||||||||||| | || |||||||||||||||| ||||||||||||| | ||||  ||| |||||| || ||| ||||||||||    
T  45555 cagtgtaattacaagtgtcggtgtcggacacgacacgtgtctgacaccgcgacatgcctaatccaaagattgtacgtgcttcat 45472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 77 - 221
Target Start/End: Original strand, 8771 - 8915
Alignment:
Q  77 cggacaagacacggacaccgacacggcgacacggctaannnnnnnagaaaatcacaaaatgcagtgtaattatatgtctcggtgtcggacacgatacgtg 176  Q
    |||||| ||||||||||| |||||| |||||| |||||       | ||||||| |  ||  |||||||||| | || |||||||||||||||| |||||    
T  8771 cggacacgacacggacactgacacgccgacacagctaataatttgaaaaaatcatattatttagtgtaattacaagtgtcggtgtcggacacgacacgtg 8870  T
Q  177 tctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    || ||||| | ||||| ||| |||  |||||| ||||||||||||    
T  8871 tccgacaccgagacacgcctaatctgaggagtctccgtgcttcat 8915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0450 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0450
Description:

Target: scaffold0450; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 155 - 221
Target Start/End: Complemental strand, 8632 - 8566
Alignment:
Q  155 tcggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    ||||| |||||||||||||||||| ||||| || |||| ||| || | |||||||||||||||||||    
T  8632 tcggtatcggacacgatacgtgtccgacactggtacacgcctaattcgaggagtgtccgtgcttcat 8566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0793 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0793
Description:

Target: scaffold0793; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 124 - 221
Target Start/End: Complemental strand, 4922 - 4823
Alignment:
Q  124 aaaatcacaaaatgcagtgtaattatatgtctcggtgtc--ggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    ||||||||| ||| ||||||||||| | || | ||||||  | |||||| || |||| ||||| ||||||| ||| |||| |||||||||||||||||||    
T  4922 aaaatcacataattcagtgtaattacaagtgttggtgtcttgtacacgacacatgtccgacacagggacacgcctaatccgaggagtgtccgtgcttcat 4823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0380 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0380
Description:

Target: scaffold0380; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 221
Target Start/End: Original strand, 8662 - 8718
Alignment:
Q  165 acacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    |||||| ||||||| ||||| |||| || ||| ||||||||||||||||||||||||    
T  8662 acacgacacgtgtccgacactgggatacgcctaatccaaggagtgtccgtgcttcat 8718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 221
Target Start/End: Original strand, 92875 - 92939
Alignment:
Q  157 ggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    |||||||||||||| || |||| |||||  |||||| ||| |||| |||||||||||||||||||    
T  92875 ggtgtcggacacgacacatgtcggacacctggacacgcctaatccgaggagtgtccgtgcttcat 92939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0279 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0279
Description:

Target: scaffold0279; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 100
Target Start/End: Original strand, 17735 - 17774
Alignment:
Q  61 ctatgaagcacggatacggacaagacacggacaccgacac 100  Q
    ||||||||||| |||||||||| |||||||||||||||||    
T  17735 ctatgaagcacagatacggacacgacacggacaccgacac 17774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0475 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 221
Target Start/End: Original strand, 3343 - 3425
Alignment:
Q  139 agtgtaattatatgtctcggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    |||||||||| | || || |||||||||| || |||||   ||||| ||||||| ||| |||| |||||||||||||||||||    
T  3343 agtgtaattacaagtgtcagtgtcggacaagacacgtggtggacactgggacacgcctaatccgaggagtgtccgtgcttcat 3425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 221
Target Start/End: Original strand, 71787 - 71853
Alignment:
Q  155 tcggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    |||||||||||||| | ||||||| ||||| |||||||  || |||| ||||||||| |||||||||    
T  71787 tcggtgtcggacacaacacgtgtccgacaccgggacacgactaatccgaggagtgtcggtgcttcat 71853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0512 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0512
Description:

Target: scaffold0512; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 221
Target Start/End: Complemental strand, 5058 - 4978
Alignment:
Q  141 tgtaattatatgtctcggtgtcggacacgatacgtgtctgacacggggacacaccttatccaaggagtgtccgtgcttcat 221  Q
    |||||||| | || |||||||||||||||| ||||||| ||||  | ||||  ||| |||| ||||||||| |||||||||    
T  5058 tgtaattacaagtgtcggtgtcggacacgacacgtgtccgacattgagacatgcctaatccgaggagtgtctgtgcttcat 4978  T

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