View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11745_low_24 (Length: 556)
Name: NF11745_low_24
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11745_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 420; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 1 - 539
Target Start/End: Complemental strand, 48469467 - 48468950
Alignment:
| Q |
1 |
actattacaagaatggtgtacagattgaggatacatttatcagcacctgacgaagatctcaatgaaaatggttctaatttgatagtatttgattatctca |
100 |
Q |
| |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
48469467 |
actattacaagaatgatgtacagattgaggatacatttatcagcacctgacgaaggtctcaatgaaaatggttctgatttgatagtatttgattatctca |
48469368 |
T |
|
| Q |
101 |
caataaaacttgcaacaagttacttctcaaaagaaaataaggttggagagggtggatttggtgcagtatacaaggtatcatttggaaattcatgtttctg |
200 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
48469367 |
caataaaacttgcaacaagttacttctcaaaagaaaataaggttggagagggtggatttggtgcagtgtacaaggtatcatttggaaattcatgtttctg |
48469268 |
T |
|
| Q |
201 |
aaaaatttcatgcaaataaaaacggtgaaatgtaaattgaagattagcaaaattgacaattgctgtggtaacnnnnnnnnnagaggaattattgtggtaa |
300 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
48469267 |
aaaaatttcatgcaaatgaaaacggtgaaatgtaaattgaagattagcaaaattgacaattgctgtggtaactttttttttagaggaattattgtggtaa |
48469168 |
T |
|
| Q |
301 |
ctggtaaggatagtaattatgtattcttttatgtgaatttcaatgcattgaataaattgttttgatatttttaatctcgatagccccaaaactctattag |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48469167 |
ctggtaaggatagtaattatgtattcttttatgtgaatttcaatgcattgaataaattgttttgatatttttaatctcgatagccccaaaactctattag |
48469068 |
T |
|
| Q |
401 |
ctgcatgatattttaatctcgatgcaggaatcagacctacatcttatgcagatgaaattttgcaagaaaaaacatctattaatttaatattgataaattt |
500 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48469067 |
atgcat---------------------gaatcagacctacatcttatgcagatgaaattttgcaagaaaaaacatctattaatttaatattgataaattt |
48468989 |
T |
|
| Q |
501 |
tcataaccatagccttgacaatcattcaatgtgggagtt |
539 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48468988 |
tcataaccatagccttgacaatcattcaatgtgggagtt |
48468950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 1 - 381
Target Start/End: Complemental strand, 48477791 - 48477412
Alignment:
| Q |
1 |
actattacaagaatggtgtacagattgaggatacatttatcagcacctgacgaagatctcaatgaaaatggttctaatttgatagtatttgattatctca |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
48477791 |
actattacaagaatggtgtacagattgaggatacatttatcagcacctgacgaagatctcaatgaaaatggttctgatttgatagtatttgattatctca |
48477692 |
T |
|
| Q |
101 |
caataaaacttgcaacaagttacttctcaaaagaaaataaggttggagagggtggatttggtgcagtatacaaggtatcatttggaaattcatgtttctg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| || ||||| || |
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| T |
48477691 |
caataaaacttgcaacaagttacttctcaacagaaaataaggttggagagggtggatttggtgcagtgtacaaggtaacatttggaaactcctgtttgtg |
48477592 |
T |
|
| Q |
201 |
aaaaatttcatgcaaataaaaacggtgaaatgtaaattgaagattagcaaaattgacaattgctgtggtaacnnnnnnnnnagaggaattattgtggtaa |
300 |
Q |
| |
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||| ||||||||||||||||||| |||| ||| |||||||||||||||||||||||||||| | |||||||| |||||||||| |||||||| |
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| T |
48477591 |
aaatatttcatgcaaataaaaactgtgatatgaaaattgaagattagcaaaattgacaattaccgtggtaacttttattttagaggaattactgtggtaa |
48477492 |
T |
|
| Q |
301 |
ctggtaaggatagtaattatgtattcttttatgtgaatttcaatgcattgaataaattgttttgatatttttaatctcgat |
381 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| ||||||| ||||||| ||||| ||||| |||| ||||||||||||| |
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|
| T |
48477491 |
ctggtaaggatagtaatttcgtattcttttatgagaatttctatgcattaaataacttgttgagata-ttttaatctcgat |
48477412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 48884372 - 48884551
Alignment:
| Q |
1 |
actattacaagaatggtgtacagattgaggatacatttatcagcacctgacgaagatctcaatgaaaatggttctaatttgatagtatttgattatctca |
100 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| | |||||||||| |||||||||||||||||||||||| |
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|
| T |
48884372 |
actattacaagaatgatgtacagattgaggatacatttatcagcacctgaagaagatct----ggaaatggttctgatttgatagtatttgattatctca |
48884467 |
T |
|
| Q |
101 |
caataaaacttgcaacaagttacttctcaaaagaaaataaggttggagagggtggatttggtgcagtatacaaggtatcatttg |
184 |
Q |
| |
|
|||||||| | |||| | |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |||||| |
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| T |
48884468 |
caataaaagtagcaagaggttacttctcaaaagaaaataaggccggagagggtggatttggtgcagtgtacaaggtaacatttg |
48884551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 5 - 272
Target Start/End: Complemental strand, 48485533 - 48485265
Alignment:
| Q |
5 |
ttacaagaatggtgtacagattgaggatacatttatcagcacctgacgaagatctcaatgaaaatggttctaatttgatagtatttgattatctcacaat |
104 |
Q |
| |
|
||||||||||| | |||| | |||||||| ||||||||||| |||| ||||||||||||| |||||||||| |||| ||||||||| ||||||||||||| |
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|
| T |
48485533 |
ttacaagaatgatatacaaaatgaggatatatttatcagcagctgaagaagatctcaatggaaatggttctgatttaatagtatttaattatctcacaat |
48485434 |
T |
|
| Q |
105 |
aaaacttgcaacaagttacttctcaaaagaaaataaggttggagagggtggatttggtgcagtatacaaggtatcatttggaaattca--tgtttctgaa |
202 |
Q |
| |
|
||| | |||||| | |||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||| ||| || |||| || |||| |||| |
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| T |
48485433 |
taaagtggcaacagataacttctcaaaagaaaataagcttggagagggtggatttggtgtagtgtacaaggtaacatatgaaaatacatctgttggtgaa |
48485334 |
T |
|
| Q |
203 |
aaatttcatgcaaataaaaacggtgaaatgtaaattgaagattagcaaaattgacaattgctgtggtaac |
272 |
Q |
| |
|
| |||||||| ||||| |||| ||||||||||||||||||||||| ||| || |||||| ||||| |||| |
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|
| T |
48485333 |
atatttcatg-aaatagaaactgtgaaatgtaaattgaagattagaaaagttcacaattactgtgataac |
48485265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 351 - 457
Target Start/End: Original strand, 48884574 - 48884679
Alignment:
| Q |
351 |
aataaattgttttgatatttttaatctcgatagccccaaaactctattagctgcatgatattttaatctcgatgcaggaatcagacctacatcttatgca |
450 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
48884574 |
aataaattgttgagatatttt-aatctcgatagccccaaaactctattagctacatgatattttaatctcgatgcatgaatcagacctacatcttatgca |
48884672 |
T |
|
| Q |
451 |
gatgaaa |
457 |
Q |
| |
|
||||||| |
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|
| T |
48884673 |
gatgaaa |
48884679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 407 - 457
Target Start/End: Complemental strand, 48477428 - 48477378
Alignment:
| Q |
407 |
gatattttaatctcgatgcaggaatcagacctacatcttatgcagatgaaa |
457 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| |||||||||||||||||| |
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|
| T |
48477428 |
gatattttaatctcgatgcatgaatcagacctccatcttatgcagatgaaa |
48477378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 287 - 341
Target Start/End: Complemental strand, 48485279 - 48485225
Alignment:
| Q |
287 |
aattattgtggtaactggtaaggatagtaattatgtattcttttatgtgaatttc |
341 |
Q |
| |
|
||||| |||| |||||||||||||||| ||| ||||||||||| || |||||||| |
|
|
| T |
48485279 |
aattactgtgataactggtaaggatagcaatgatgtattctttaatatgaatttc |
48485225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 399
Target Start/End: Original strand, 38817815 - 38818219
Alignment:
| Q |
1 |
actattacaagaatggtgtacagattgaggatacatttatcagcacctgacgaagatctcaatgaaaatggttctaatttgatagtatttgattatctca |
100 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
38817815 |
actattacaagaatgatgtacagattggggatacatttatcagcacctgacgaagatctcaatgaaaatggttctgatttgatagtatttgattatctca |
38817914 |
T |
|
| Q |
101 |
caataaaacttgcaacaagttacttctcaaaagaaaataaggttggagagggtggatttggtgcagtatacaaggtatcatttggaaattca--tgtttc |
198 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |||||| |
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|
| T |
38817915 |
caataaaacttgcaacaagttacttctcaaaagaaaataaggttggagagggtggatttggtgcagtgtacaaggtaacatttggaaattcacgtgtttc |
38818014 |
T |
|
| Q |
199 |
tgaaaaatttcatgc-aaataaaaacggtgaaatgtaaattgaagattagcaaaattgacaattgctgtggtaac--nnnnnnnnnagaggaattattgt |
295 |
Q |
| |
|
||||| ||||||||| ||||| |||| |||||||||||||| ||||||| |||| |||| |||| | ||||||| | |||||||| ||| |
|
|
| T |
38818015 |
tgaaatatttcatgctaaatagaaactgtgaaatgtaaattcaagattaacaaagttgagaattacactggtaacttttttttttaaaaggaattactgt |
38818114 |
T |
|
| Q |
296 |
ggtaactggtaaggatagtaattatgtattcttttatgtgaatttcaatgcattgaataaattgttttgatatttttaatctcg--atagccccaaaact |
393 |
Q |
| |
|
||||||||| ||||||||| || |||||||||||||||| |||||| ||||||| ||||||||| | |||| ||||||||||| ||||||||||||| |
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|
| T |
38818115 |
ggtaactggcaaggatagttatgatgtattcttttatgtcaatttctatgcattaaataaattgctgagata-ttttaatctcgttttagccccaaaact |
38818213 |
T |
|
| Q |
394 |
ctatta |
399 |
Q |
| |
|
|||||| |
|
|
| T |
38818214 |
ctatta |
38818219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 430 - 539
Target Start/End: Original strand, 38819114 - 38819223
Alignment:
| Q |
430 |
atcagacctacatcttatgcagatgaaattttgcaagaaaaaacatctattaatttaatattgataaattttcataaccatagccttgacaatcattcaa |
529 |
Q |
| |
|
||||||||| |||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38819114 |
atcagacctccatcttatgcaggtgaagttttgcaagaaaaaacatctattaatttaatattgataaattttcataaccatagccttgacaatcattcaa |
38819213 |
T |
|
| Q |
530 |
tgtgggagtt |
539 |
Q |
| |
|
|||||||||| |
|
|
| T |
38819214 |
tgtgggagtt |
38819223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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