View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11745_low_240 (Length: 213)
Name: NF11745_low_240
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11745_low_240 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 178; Significance: 3e-96; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 18 - 199
Target Start/End: Original strand, 1961671 - 1961852
Alignment:
| Q |
18 |
ttaaataggtattacactgctatcatgcatcccaaaattacagcaaaatgacaatgttgtctctaaaagttgtagagtattaagtggttaaggtcatcaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
1961671 |
ttaaataggtattacactgctatcatgcatcccaaaattacagcaaaatgacaatgttgtctctaaaagttgtagagtattaagtggttaaggtaatcaa |
1961770 |
T |
|
| Q |
118 |
caaattcatggatgacaaacttttcattctctaatacatctgaaatccttgctttgcaatgagttctagtcttggctctgtg |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1961771 |
caaattcatggatgacaaacttttcattctctaatacatctgaaatccttgctttgcaatgagttctagtcttggctctgtg |
1961852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University