View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11745_low_242 (Length: 211)
Name: NF11745_low_242
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11745_low_242 |
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Alignment Details
Target: chr6 (Bit Score: 170; Significance: 2e-91; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 17 - 194
Target Start/End: Original strand, 26692974 - 26693151
Alignment:
| Q |
17 |
agatggcgagacgatagccataccaaggaaatttaagatatgcggctcaaataaaattgaaataaacagtgttatcaatcacagatcgcagaaaatagcg |
116 |
Q |
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| T |
26692974 |
agatggcgagacgatagccataccaaggaaatttaagatatgcggctcaaataaaattgaaataaacagtgttatcaatcacagatcgcagaaaatagcg |
26693073 |
T |
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| Q |
117 |
atttgttcgggactctgctacactatagtgctataatgccgctattgttgctatgaaacaacactttgtactaaatag |
194 |
Q |
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| T |
26693074 |
atttgttcgggactctgctacactatagtgctataatgctgctattgttgttatgaaacaacactttgtactaaatag |
26693151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 114
Target Start/End: Original strand, 31809110 - 31809138
Alignment:
| Q |
86 |
tgttatcaatcacagatcgcagaaaatag |
114 |
Q |
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| T |
31809110 |
tgttatcaatcacagatcgcagaaaatag |
31809138 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 130 - 194
Target Start/End: Original strand, 3723446 - 3723510
Alignment:
| Q |
130 |
tctgctacactatagtgctataatgccgctattgttgctatgaaacaacactttgtactaaatag |
194 |
Q |
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| T |
3723446 |
tctgctacactacaatgctaaaatgttgctatggttgctataaaacaacactttgtactaaatag |
3723510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 85 - 124
Target Start/End: Original strand, 26275457 - 26275496
Alignment:
| Q |
85 |
gtgttatcaatcacagatcgcagaaaatagcgatttgttc |
124 |
Q |
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| T |
26275457 |
gtgttgtcaattacagatcgcagaaaatagcgatttgttc |
26275496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 124
Target Start/End: Original strand, 26481002 - 26481040
Alignment:
| Q |
86 |
tgttatcaatcacagatcgcagaaaatagcgatttgttc |
124 |
Q |
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| T |
26481002 |
tgttgtcaatcacagatcgcagaaaatagcggtttgttc |
26481040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 83 - 124
Target Start/End: Complemental strand, 41991330 - 41991289
Alignment:
| Q |
83 |
cagtgttatcaatcacagatcgcagaaaatagcgatttgttc |
124 |
Q |
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| T |
41991330 |
cagtgttgtcaattacagatcgcagaaaatagcggtttgttc |
41991289 |
T |
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