View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11745_low_243 (Length: 210)
Name: NF11745_low_243
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11745_low_243 |
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Alignment Details
Target: chr8 (Bit Score: 174; Significance: 8e-94; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 5 - 194
Target Start/End: Complemental strand, 26275177 - 26274988
Alignment:
| Q |
5 |
ccacttgtttcttctcactcagacagctgttgcgtcatgctagatttatatatatgcatgtctttatttctttaggtacttgtacaacaactaagtaaac |
104 |
Q |
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| T |
26275177 |
ccacttgtttcttctctctcagacagctgttgtgtcatgctagatttatatatatgtatgtctttatttctttaggtacttgtacaacaactaagcaaac |
26275078 |
T |
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| Q |
105 |
tcattctaaaaatagatgagatgtcaaaagaaataattgttccttattgcttaatgtggaatttatgatatgtaattttactgataatgt |
194 |
Q |
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| T |
26275077 |
tcattctaaaaatagatgagatgtcaaaagaaataattgttccttattgcttaatgtggaatttatgatatgtaattttactgataatgt |
26274988 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 101 - 183
Target Start/End: Original strand, 26250930 - 26251015
Alignment:
| Q |
101 |
aaactcattctaaaaatagatgagatgtcaaaagaaataatt--gttccttattgcttaatgtggaatttatgata-tgtaatttt |
183 |
Q |
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|||||||||||||||||| ||||||||||||||||||||| | |||||||| |||||| ||||||||||||||| ||||||||| |
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| T |
26250930 |
aaactcattctaaaaatacatgagatgtcaaaagaaataactgagttccttagagcttaaggtggaatttatgatattgtaatttt |
26251015 |
T |
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