View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11745_low_249 (Length: 205)

Name: NF11745_low_249
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11745_low_249
NF11745_low_249
[»] chr6 (5 HSPs)
chr6 (108-205)||(373033-373130)
chr6 (1-50)||(372926-372975)
chr6 (119-193)||(14321623-14321697)
chr6 (119-167)||(256755-256803)
chr6 (119-172)||(30236597-30236650)
[»] chr5 (3 HSPs)
chr5 (119-193)||(35583868-35583942)
chr5 (119-184)||(16311538-16311603)
chr5 (119-172)||(29664743-29664796)
[»] chr2 (4 HSPs)
chr2 (119-193)||(34544575-34544649)
chr2 (118-192)||(29656998-29657072)
chr2 (119-168)||(31601029-31601078)
chr2 (119-171)||(34214919-34214971)
[»] chr7 (5 HSPs)
chr7 (119-184)||(30999752-30999817)
chr7 (119-167)||(19440274-19440322)
chr7 (119-170)||(11472974-11473025)
chr7 (119-167)||(23475527-23475575)
chr7 (119-167)||(23533868-23533916)
[»] chr4 (4 HSPs)
chr4 (119-193)||(12075895-12075969)
chr4 (121-191)||(17113268-17113338)
chr4 (143-193)||(21957099-21957149)
chr4 (118-170)||(39085933-39085985)
[»] chr3 (1 HSPs)
chr3 (143-193)||(30905056-30905106)
[»] chr8 (2 HSPs)
chr8 (119-194)||(39379841-39379916)
chr8 (129-193)||(8545622-8545687)
[»] scaffold1322 (1 HSPs)
scaffold1322 (123-193)||(863-933)
[»] chr1 (1 HSPs)
chr1 (119-172)||(48125928-48125981)


Alignment Details
Target: chr6 (Bit Score: 94; Significance: 4e-46; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 108 - 205
Target Start/End: Original strand, 373033 - 373130
Alignment:
Q  108 catcaccgtatatagtcattgatcgtcatcatcggtttgttgaataatgcattacaacattgcgcacgtggctgaaatatactttttgttattaagaa 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  373033 catcaccgtatatagtcattgatcgtcatcatcggtttgttgaataatgcattacaacattgcgcacgtggctgaaatatacttttttttattaagaa 373130  T

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Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 372926 - 372975
Alignment:
Q  1 ctaaatcatttcactcacacaatgagtctcaatctatcagacgataccca 50  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||    
T  372926 ctaaatcatttcacacacacaatgagtctcaatctatcagacgataccca 372975  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 119 - 193
Target Start/End: Complemental strand, 14321697 - 14321623
Alignment:
Q  119 atagtcattgatcgtcatcatcggtttgttgaataatgcattacaacattgcgcacgtggctgaaatatactttt 193  Q
    ||||||||||||||||||||||  ||| || |||| |||||||||||||||| | |  |||||||| ||||||||    
T  14321697 atagtcattgatcgtcatcatctctttattcaatattgcattacaacattgcactcaaggctgaaaaatactttt 14321623  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 167
Target Start/End: Original strand, 256755 - 256803
Alignment:
Q  119 atagtcattgatcgtcatcatcggtttgttgaataatgcattacaacat 167  Q
    ||||||||||||||||||||||  |||| || |||||||||||||||||    
T  256755 atagtcattgatcgtcatcatctatttgctggataatgcattacaacat 256803  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 119 - 172
Target Start/End: Original strand, 30236597 - 30236650
Alignment:
Q  119 atagtcattgatcgtcatcatcggtttgttgaataatgcattacaacattgcgc 172  Q
    |||||||| ||||| ||| |||  ||||||||||||| ||||||||||||||||    
T  30236597 atagtcatcgatcgccattatctctttgttgaataatacattacaacattgcgc 30236650  T

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Target: chr5 (Bit Score: 47; Significance: 5e-18; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 119 - 193
Target Start/End: Complemental strand, 35583942 - 35583868
Alignment:
Q  119 atagtcattgatcgtcatcatcggtttgttgaataatgcattacaacattgcgcacgtggctgaaatatactttt 193  Q
    |||||||| ||||||| |||||  ||||||| |||||||||||||||||||||| ||||||||||| ||||||||    
T  35583942 atagtcatcgatcgtcgtcatctctttgttggataatgcattacaacattgcgctcgtggctgaaaaatactttt 35583868  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 119 - 184
Target Start/End: Original strand, 16311538 - 16311603
Alignment:
Q  119 atagtcattgatcgtcatcatcggtttgttgaataatgcattacaacattgcgcacgtggctgaaa 184  Q
    |||| ||| |||||||||||||  ||||||  ||||| |||||||||||||||| || ||||||||    
T  16311538 atagccatcgatcgtcatcatctctttgtttgataattcattacaacattgcgctcggggctgaaa 16311603  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 119 - 172
Target Start/End: Complemental strand, 29664796 - 29664743
Alignment:
Q  119 atagtcattgatcgtcatcatcggtttgttgaataatgcattacaacattgcgc 172  Q
    |||||||| |||||||||||||   ||| || ||||||||||||||||||||||    
T  29664796 atagtcatcgatcgtcatcatcttgttgctggataatgcattacaacattgcgc 29664743  T

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Target: chr2 (Bit Score: 47; Significance: 5e-18; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 119 - 193
Target Start/End: Original strand, 34544575 - 34544649
Alignment:
Q  119 atagtcattgatcgtcatcatcggtttgttgaataatgcattacaacattgcgcacgtggctgaaatatactttt 193  Q
    |||||||||||||||| |||||  ||||||| |||||||||||||||||||||| || |||||||| ||||||||    
T  34544575 atagtcattgatcgtcgtcatctctttgttggataatgcattacaacattgcgctcggggctgaaaaatactttt 34544649  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 118 - 192
Target Start/End: Original strand, 29656998 - 29657072
Alignment:
Q  118 tatagtcattgatcgtcatcatcggtttgttgaataatgcattacaacattgcgcacgtggctgaaatatacttt 192  Q
    ||||||||| |||||||||||||  |||  || |||||||||||||||||||||| || |||||||| |||||||    
T  29656998 tatagtcatcgatcgtcatcatctctttcctggataatgcattacaacattgcgctcggggctgaaaaatacttt 29657072  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 119 - 168
Target Start/End: Original strand, 31601029 - 31601078
Alignment:
Q  119 atagtcattgatcgtcatcatcggtttgttgaataatgcattacaacatt 168  Q
    ||||||||||||||||||||||  ||||||| ||||||||||||||||||    
T  31601029 atagtcattgatcgtcatcatctctttgttggataatgcattacaacatt 31601078  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 171
Target Start/End: Original strand, 34214919 - 34214971
Alignment:
Q  119 atagtcattgatcgtcatcatcggtttgttgaataatgcattacaacattgcg 171  Q
    |||||||| |||| ||||||||  |||| || |||||||||||||||||||||    
T  34214919 atagtcatagatcatcatcatctctttgctggataatgcattacaacattgcg 34214971  T

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Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 119 - 184
Target Start/End: Complemental strand, 30999817 - 30999752
Alignment:
Q  119 atagtcattgatcgtcatcatcggtttgttgaataatgcattacaacattgcgcacgtggctgaaa 184  Q
    ||||||||||||||||||||||  ||||||| ||||| ||||||||||||||||| ||||||||||    
T  30999817 atagtcattgatcgtcatcatctttttgttggataatacattacaacattgcgcaagtggctgaaa 30999752  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 167
Target Start/End: Original strand, 19440274 - 19440322
Alignment:
Q  119 atagtcattgatcgtcatcatcggtttgttgaataatgcattacaacat 167  Q
    ||||||||||||||||||||||  |||| || |||||||||||||||||    
T  19440274 atagtcattgatcgtcatcatctatttgctggataatgcattacaacat 19440322  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 119 - 170
Target Start/End: Original strand, 11472974 - 11473025
Alignment:
Q  119 atagtcattgatcgtcatcatcggtttgttgaataatgcattacaacattgc 170  Q
    |||||||| |||||||||||||  ||||||| ||||| ||||||||||||||    
T  11472974 atagtcatcgatcgtcatcatctctttgttggataatacattacaacattgc 11473025  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 167
Target Start/End: Original strand, 23475527 - 23475575
Alignment:
Q  119 atagtcattgatcgtcatcatcggtttgttgaataatgcattacaacat 167  Q
    ||||||||||||||||||||||  |||| |  |||||||||||||||||    
T  23475527 atagtcattgatcgtcatcatctatttgctagataatgcattacaacat 23475575  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 167
Target Start/End: Original strand, 23533868 - 23533916
Alignment:
Q  119 atagtcattgatcgtcatcatcggtttgttgaataatgcattacaacat 167  Q
    |||||||||||| |||||||||  |||| || |||||||||||||||||    
T  23533868 atagtcattgattgtcatcatctatttgctggataatgcattacaacat 23533916  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 119 - 193
Target Start/End: Original strand, 12075895 - 12075969
Alignment:
Q  119 atagtcattgatcgtcatcatcggtttgttgaataatgcattacaacattgcgcacgtggctgaaatatactttt 193  Q
    |||| |||||||||||||||||  ||||||| |||||||||||||||| ||||| || || ||||| ||||||||    
T  12075895 atagccattgatcgtcatcatctctttgttggataatgcattacaacaatgcgctcgaggttgaaaaatactttt 12075969  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 121 - 191
Target Start/End: Original strand, 17113268 - 17113338
Alignment:
Q  121 agtcattgatcgtcatcatcggtttgttgaataatgcattacaacattgcgcacgtggctgaaatatactt 191  Q
    |||||||||||||||| |||  ||||||||||||||||||||||||||| || || |||| ||| ||||||    
T  17113268 agtcattgatcgtcataatctctttgttgaataatgcattacaacattgtgctcggggctaaaaaatactt 17113338  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 193
Target Start/End: Original strand, 21957099 - 21957149
Alignment:
Q  143 tttgttgaataatgcattacaacattgcgcacgtggctgaaatatactttt 193  Q
    ||||||| |||||||||||||||||||| || | |||||||| ||||||||    
T  21957099 tttgttggataatgcattacaacattgcacatgaggctgaaaaatactttt 21957149  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 170
Target Start/End: Complemental strand, 39085985 - 39085933
Alignment:
Q  118 tatagtcattgatcgtcatcatcggtttgttgaataatgcattacaacattgc 170  Q
    |||||| || ||||||| |||||  ||||||| ||||||||||||||||||||    
T  39085985 tatagttatcgatcgtcgtcatctctttgttggataatgcattacaacattgc 39085933  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 143 - 193
Target Start/End: Original strand, 30905056 - 30905106
Alignment:
Q  143 tttgttgaataatgcattacaacattgcgcacgtggctgaaatatactttt 193  Q
    |||||||||||||||||||||||||||||| || || ||||| ||||||||    
T  30905056 tttgttgaataatgcattacaacattgcgctcggggttgaaaaatactttt 30905106  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 119 - 194
Target Start/End: Original strand, 39379841 - 39379916
Alignment:
Q  119 atagtcattgatcgtcatcatcggtttgttgaataatgcattacaacattgcgcacgtggctgaaatatacttttt 194  Q
    |||||||||||| | |||||||  ||||||| ||||||||||||||||||| |  || |||||||| ||| |||||    
T  39379841 atagtcattgattgacatcatctctttgttggataatgcattacaacattgtgttcgaggctgaaaaatatttttt 39379916  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 129 - 193
Target Start/End: Original strand, 8545622 - 8545687
Alignment:
Q  129 atcgtcatcatcggtttgttgaataatgcattacaacattgcgcac-gtggctgaaatatactttt 193  Q
    ||||||||||||  ||||||| |||||||||||||||||| ||| | | |||||||| ||||||||    
T  8545622 atcgtcatcatctctttgttggataatgcattacaacattacgctcgggggctgaaaaatactttt 8545687  T

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Target: scaffold1322 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1322
Description:

Target: scaffold1322; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 193
Target Start/End: Complemental strand, 933 - 863
Alignment:
Q  123 tcattgatcgtcatcatcggtttgttgaataatgcattacaacattgcgcacgtggctgaaatatactttt 193  Q
    |||||||||||| |||||  ||| ||||||| |||||||||||||||| | |  |||||||| ||||||||    
T  933 tcattgatcgtcgtcatctctttattgaatattgcattacaacattgcactcaaggctgaaaaatactttt 863  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 119 - 172
Target Start/End: Original strand, 48125928 - 48125981
Alignment:
Q  119 atagtcattgatcgtcatcatcggtttgttgaataatgcattacaacattgcgc 172  Q
    ||||||||||||||||||||||  |||| ||  ||||| |||||||||||||||    
T  48125928 atagtcattgatcgtcatcatctctttgctggttaatgtattacaacattgcgc 48125981  T

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