View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11745_low_25 (Length: 555)
Name: NF11745_low_25
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11745_low_25 |
 | |
|
| [»] scaffold0159 (3 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 528; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 528; E-Value: 0
Query Start/End: Original strand, 1 - 536
Target Start/End: Original strand, 5767812 - 5768347
Alignment:
| Q |
1 |
tatgtaccagaagaaatgttcagggccagaaaaacaaggtgttcgttcagggcttgtgagtggtgcaggatttggtttctcttttgtcgctctatattgc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5767812 |
tatgtaccagaagaaatgttcagggccagaaaaacaaggtgttcattcagggcttgtgagtggtgcaggatttggtttctcttttgtcgctctatattgc |
5767911 |
T |
|
| Q |
101 |
atgagtgctttttgtttctacataggatctgtcctagtgcaacacgggaaagcaacttttcaagaagttttcaaggtacaacaatcaatcaacttaaaga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5767912 |
atgagtgctttttgtttctacataggatctgtcctagtgcaacacgggaaagcaacttttcaagaagttttcaaggtacaacaatcaatcaacttaaaga |
5768011 |
T |
|
| Q |
201 |
ttctcaacatttacttgattcctttttgtcattctcatgagatattttatgcaggttttctttagtttaactataacagcagtaggcatttcacagtcta |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5768012 |
ttctcaacatttacttgattcctttttgtcattctcatgagatattttatgcaggttttctttagtttaactataacagcagtaggcatttcacagtcta |
5768111 |
T |
|
| Q |
301 |
gtaccttggcacccgacactaataaggccaaagattctgcagcttcaatatttgaaattctagacagtaaccctactatcgactccagcagcaatgaagg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5768112 |
gtaccttggcacccgacactaataaggccaaagattctgcagcttcaatatttgaaattctagacagtaaccctactatcgactccagcagcaatgaagg |
5768211 |
T |
|
| Q |
401 |
tgtcacattagaaacagtcacaggcgatattgaacttcaacatgtcagctttaattacccaacaagacctcacattcaaattttcaaagatttatgtcta |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5768212 |
tgtcacattagaaacagtcacaggcgatattgaacttcaacatgtcagcttcaattacccaacaagacctcacattcaaattttcaaagatttatgtcta |
5768311 |
T |
|
| Q |
501 |
tacatccctgccggaaaggtaatcattactttagcg |
536 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
5768312 |
tacatccctgccggaaaggtaatcattactttagcg |
5768347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 14 - 494
Target Start/End: Complemental strand, 5830607 - 5830122
Alignment:
| Q |
14 |
aaatgttcagggccagaaaaacaaggtgttcgttcagggcttgtgagtggtgcaggatttggtttctcttttgtcgctctatattgcatgagtgcttttt |
113 |
Q |
| |
|
||||||| ||| |||| |||||||| ||||| | |||||||| |||||| ||||||||| | ||| ||| | | ||||||||||| | |||||| |
|
|
| T |
5830607 |
aaatgtttaggcccagcgaaacaaggagttcgcttggggcttgttagtggtataggatttggctgctcgtttttagttctatattgcacaaatgctttca |
5830508 |
T |
|
| Q |
114 |
gtttctacataggatctgtcctagtgcaacacgggaaagcaacttttcaagaagttttcaaggtacaa-caatcaatcaacttaaagattctcaacattt |
212 |
Q |
| |
|
||| |||||||||||||| |||||||||||||| |||||||||||| ||||||||||| ||||||| || |||| ||||||| || || | |||| |
|
|
| T |
5830507 |
ttttttacataggatctgttctagtgcaacacggcaaagcaacttttacagaagttttcagggtacaatcactcaaccaacttagc-atgctttatattt |
5830409 |
T |
|
| Q |
213 |
acttgattcctttttgtcat-----tctcatgagatattttatgcaggttttctttagtttaactataacagcagtaggcatttcacagtctagtacctt |
307 |
Q |
| |
|
|||| | || || | || ||| | ||||| ||||| |||||||||||| |||||| || || ||| | | | |||| ||| | | ||| || |
|
|
| T |
5830408 |
acttttatgtttattttgatctagttcttacaagataatttatacaggttttctttgctttaacaatgacggcaatcgccgtttcgcagacgactacatt |
5830309 |
T |
|
| Q |
308 |
ggcacccgacactaataaggccaaagattctgcagcttcaatatttgaaattctagacagtaaccctactatcgactccagcagcaatgaaggtgtcaca |
407 |
Q |
| |
|
|||||| |||||||| |||||||||||||||||||||||||||||||||||| | ||||| || ||| ||| || ||||||||||||| ||||| ||| |
|
|
| T |
5830308 |
ggcaccagacactaacaaggccaaagattctgcagcttcaatatttgaaattattgacagcaaacctgatattgattccagcagcaatgcgggtgtaaca |
5830209 |
T |
|
| Q |
408 |
ttagaaacagtcacaggcgatattgaacttcaacatgtcagctttaattacccaacaagacctcacattcaaattttcaaagattta |
494 |
Q |
| |
|
||||||||| || |||||||||||||||||||||| |||||||||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
5830208 |
cgagaaacagtagttggtgatattgaacttcaacatgtcaactttaattacccaacaaggcccgacattcaaattttcaaagattta |
5830122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 245 - 527
Target Start/End: Original strand, 5826401 - 5826683
Alignment:
| Q |
245 |
ttttatgcaggttttctttagtttaactataacagcagtaggcatttcacagtctagtaccttggcacccgacactaataaggccaaagattctgcagct |
344 |
Q |
| |
|
|||| ||||||||||||| ||||||| || |||||| |||| |||| ||| ||||| | || ||||| || ||||| ||||||||||||||| ||||| |
|
|
| T |
5826401 |
ttttgtgcaggttttcttctgtttaacaattacagcaataggtgtttcgcagactagtgctttagcaccagatactaacaaggccaaagattctacagct |
5826500 |
T |
|
| Q |
345 |
tcaatatttgaaattctagacagtaaccctactatcgactccagcagcaatgaaggtgtcacattagaaacagtcacaggcgatattgaacttcaacatg |
444 |
Q |
| |
|
||||||||||||||||||||||| || || || || ||||| || || ||||| |||| || ||||||| || | ||| ||| ||||||||||| | | |
|
|
| T |
5826501 |
tcaatatttgaaattctagacagcaaaccaaccattgactcaagtagtaatgagggtgcgacgctagaaactgtgaaaggtgattttgaacttcaaaaag |
5826600 |
T |
|
| Q |
445 |
tcagctttaattacccaacaagacctcacattcaaattttcaaagatttatgtctatacatccctgccggaaaggtaatcatt |
527 |
Q |
| |
|
||||||||| ||||||||||| ||| | |||||||| ||||||||||| ||||| |||||| || ||||||||||||||| |
|
|
| T |
5826601 |
tcagctttagatacccaacaaggcctaatattcaaatattcaaagatttgtgtcttagcatcccagctggaaaggtaatcatt |
5826683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 245 - 527
Target Start/End: Original strand, 5781853 - 5782135
Alignment:
| Q |
245 |
ttttatgcaggttttctttagtttaactataacagcagtaggcatttcacagtctagtaccttggcacccgacactaataaggccaaagattctgcagct |
344 |
Q |
| |
|
|||| ||||||||||||| ||||||| || |||||| |||| |||| ||| || || | || || || || ||||| ||||||||||||||| ||||| |
|
|
| T |
5781853 |
ttttgtgcaggttttcttctgtttaacaattacagcaataggtgtttcgcagactcgtgctttagccccagatactaacaaggccaaagattctacagct |
5781952 |
T |
|
| Q |
345 |
tcaatatttgaaattctagacagtaaccctactatcgactccagcagcaatgaaggtgtcacattagaaacagtcacaggcgatattgaacttcaacatg |
444 |
Q |
| |
|
||||||||||||||||||||||| || || || || ||||| || || ||||| |||| || ||||||| || | ||| ||| ||||||||||| | | |
|
|
| T |
5781953 |
tcaatatttgaaattctagacagcaaaccaaccattgactcaagtagtaatgagggtgcgacgctagaaactgtgaaaggtgattttgaacttcaaaaag |
5782052 |
T |
|
| Q |
445 |
tcagctttaattacccaacaagacctcacattcaaattttcaaagatttatgtctatacatccctgccggaaaggtaatcatt |
527 |
Q |
| |
|
||||||||| ||||||||||| ||| | |||||||| ||||||||||| ||||| |||||| || ||||||||||||||| |
|
|
| T |
5782053 |
tcagctttagatacccaacaaggcctaatattcaaatattcaaagatttgtgtcttagcatcccagctggaaaggtaatcatt |
5782135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 5825932 - 5826109
Alignment:
| Q |
1 |
tatgtaccagaagaaatgttcagggccagaaaaacaaggtgttcgttcagggcttgtgagtggtgcaggatttggtttctcttttgtcgctctatattgc |
100 |
Q |
| |
|
|||||||||||| |||||||||| |||||||||||||||||| | | || ||||| |||||| |||||| |||||||| ||| | |||||||| ||| |
|
|
| T |
5825932 |
tatgtaccagaaaaaatgttcagcaccagaaaaacaaggtgttaggttgggacttgttagtggtataggattcggtttctcattttttgctctatactgc |
5826031 |
T |
|
| Q |
101 |
atgagtgctttttgtttctacataggatctgtcctagtgcaacacgggaaagcaacttttcaagaagttttcaaggta |
178 |
Q |
| |
|
| | |||||| ||||||||||||||||| || || |||||||||| ||||||||||| ||| |||||||||||| |
|
|
| T |
5826032 |
acaaatgctttctgtttctacataggatcagttcttatgcaacacggcaaagcaactttcggagaggttttcaaggta |
5826109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 14 - 180
Target Start/End: Original strand, 5781363 - 5781529
Alignment:
| Q |
14 |
aaatgttcagggccagaaaaacaaggtgttcgttcagggcttgtgagtggtgcaggatttggtttctcttttgtcgctctatattgcatgagtgcttttt |
113 |
Q |
| |
|
|||||||||| |||||| ||||||||||| | | || ||||| ||||||| |||||||||||||| ||| | ||||| || |||| | || ||| | |
|
|
| T |
5781363 |
aaatgttcagcaccagaataacaaggtgttaggttgggacttgttagtggtgtaggatttggtttctaattttttgctctttactgcacaaatgatttct |
5781462 |
T |
|
| Q |
114 |
gtttctacataggatctgtcctagtgcaacacgggaaagcaacttttcaagaagttttcaaggtaca |
180 |
Q |
| |
|
|||||||||||||||| || || || |||| || ||||||||| || ||| | |||||||||||| |
|
|
| T |
5781463 |
gtttctacataggatcagttcttatggaacatggcaaagcaactcttggagaggatttcaaggtaca |
5781529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0159 (Bit Score: 79; Significance: 1e-36; HSPs: 3)
Name: scaffold0159
Description:
Target: scaffold0159; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 245 - 527
Target Start/End: Original strand, 27185 - 27467
Alignment:
| Q |
245 |
ttttatgcaggttttctttagtttaactataacagcagtaggcatttcacagtctagtaccttggcacccgacactaataaggccaaagattctgcagct |
344 |
Q |
| |
|
|||| ||||||||||||| ||||||| || |||||| |||| |||| ||| || || | || || || || ||||| ||||||||||||||| ||||| |
|
|
| T |
27185 |
ttttgtgcaggttttcttctgtttaacaattacagcaataggtgtttcgcagactcgtgctttagccccagatactaacaaggccaaagattctacagct |
27284 |
T |
|
| Q |
345 |
tcaatatttgaaattctagacagtaaccctactatcgactccagcagcaatgaaggtgtcacattagaaacagtcacaggcgatattgaacttcaacatg |
444 |
Q |
| |
|
||||||||||||||||||||||| || || || || ||||| || || ||||| |||| || ||||||| || | ||| ||| ||||||||||| | | |
|
|
| T |
27285 |
tcaatatttgaaattctagacagcaaaccaaccattgactcaagtagtaatgagggtgcgacgctagaaactgtgaaaggtgattttgaacttcaaaaag |
27384 |
T |
|
| Q |
445 |
tcagctttaattacccaacaagacctcacattcaaattttcaaagatttatgtctatacatccctgccggaaaggtaatcatt |
527 |
Q |
| |
|
||||||||| ||||||||||| ||| | |||||||| ||||||||||| ||||| |||||| || ||||||||||||||| |
|
|
| T |
27385 |
tcagctttagatacccaacaaggcctaatattcaaatattcaaagatttgtgtcttagcatcccagctggaaaggtaatcatt |
27467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0159; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 318 - 527
Target Start/End: Original strand, 35389 - 35598
Alignment:
| Q |
318 |
actaataaggccaaagattctgcagcttcaatatttgaaattctagacagtaaccctactatcgactccagcagcaatgaaggtgtcacattagaaacag |
417 |
Q |
| |
|
||||| ||||||||||||||| |||||||||||||||||||||||||||| || || || || ||||| || || ||||| |||| || ||||||| | |
|
|
| T |
35389 |
actaacaaggccaaagattctacagcttcaatatttgaaattctagacagcaaaccaaccattgactcaagtagtaatgagggtgcgacgctagaaactg |
35488 |
T |
|
| Q |
418 |
tcacaggcgatattgaacttcaacatgtcagctttaattacccaacaagacctcacattcaaattttcaaagatttatgtctatacatccctgccggaaa |
517 |
Q |
| |
|
| | ||| ||| ||||||||||| | |||||||||| ||||||||||| ||| | |||||||| ||||||||||| ||||| |||||| || ||||| |
|
|
| T |
35489 |
tgaaaggtgattttgaacttcaaaaagtcagctttagatacccaacaaggcctaatattcaaatattcaaagatttgtgtcttagcatcccagctggaaa |
35588 |
T |
|
| Q |
518 |
ggtaatcatt |
527 |
Q |
| |
|
|||||||||| |
|
|
| T |
35589 |
ggtaatcatt |
35598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0159; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 14 - 180
Target Start/End: Original strand, 26695 - 26861
Alignment:
| Q |
14 |
aaatgttcagggccagaaaaacaaggtgttcgttcagggcttgtgagtggtgcaggatttggtttctcttttgtcgctctatattgcatgagtgcttttt |
113 |
Q |
| |
|
|||||||||| |||||| ||||||||||| | | || ||||| ||||||| |||||||||||||| ||| | ||||| || |||| | || ||| | |
|
|
| T |
26695 |
aaatgttcagcaccagaataacaaggtgttaggttgggacttgttagtggtgtaggatttggtttctaattttttgctctttactgcacaaatgatttct |
26794 |
T |
|
| Q |
114 |
gtttctacataggatctgtcctagtgcaacacgggaaagcaacttttcaagaagttttcaaggtaca |
180 |
Q |
| |
|
|||||||||||||||| || || || |||| || ||||||||| || ||| | |||||||||||| |
|
|
| T |
26795 |
gtttctacataggatcagttcttatggaacatggcaaagcaactcttggagaggatttcaaggtaca |
26861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 72; Significance: 2e-32; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 247 - 494
Target Start/End: Complemental strand, 29327889 - 29327642
Alignment:
| Q |
247 |
ttatgcaggttttctttagtttaactataacagcagtaggcatttcacagtctagtaccttggcacccgacactaataaggccaaagattctgcagcttc |
346 |
Q |
| |
|
|||||||||||||||||||||| || || |||||| | |||| |||||| ||| ||| ||||||||||| ||||||| |||||| |||||||| |
|
|
| T |
29327889 |
ttatgcaggttttctttagtttgacaatgacagcaatgtctgtttcccagtcttctacattgtttcccgacactaacaaggccatagattccgcagcttc |
29327790 |
T |
|
| Q |
347 |
aatatttgaaattctagacagtaaccctactatcgactccagcagcaatgaaggtgtcacattagaaacagtcacaggcgatattgaacttcaacatgtc |
446 |
Q |
| |
|
||||||| | ||||| ||||| || ||| ||| || |||||||||||||| ||||| ||| |||||| ||| ||| | || ||||||||||| ||| |
|
|
| T |
29327789 |
aatatttaacattcttgacagcaaacctgatattgattccagcagcaatgatggtgtaacacaagaaactgtcgttggcaacatcgaacttcaacacgtc |
29327690 |
T |
|
| Q |
447 |
agctttaattacccaacaagacctcacattcaaattttcaaagattta |
494 |
Q |
| |
|
| ||||| ||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
29327689 |
aactttagttacccaacaagacccgacattcaaattttcaaagattta |
29327642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 14 - 180
Target Start/End: Complemental strand, 29328134 - 29327968
Alignment:
| Q |
14 |
aaatgttcagggccagaaaaacaaggtgttcgttcagggcttgtgagtggtgcaggatttggtttctcttttgtcgctctatattgcatgagtgcttttt |
113 |
Q |
| |
|
|||||||| || |||| |||||||||||||| || |||||||| ||||||| |||||||||||| |||||| | ||||||||||| | |||||| |
|
|
| T |
29328134 |
aaatgttctggaccagcgaaacaaggtgttcgctcggggcttgttagtggtgtaggatttggtttatcttttttaattctatattgcacaaatgctttca |
29328035 |
T |
|
| Q |
114 |
gtttctacataggatctgtcctagtgcaacacgggaaagcaacttttcaagaagttttcaaggtaca |
180 |
Q |
| |
|
||||||||||||||| | ||||||| ||| |||||||||| ||| |||| |||||| |||||| |
|
|
| T |
29328034 |
tcttctacataggatctattttagtgcatcacaggaaagcaacgtttgtagaaattttcagggtaca |
29327968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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