View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11745_low_26 (Length: 551)
Name: NF11745_low_26
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11745_low_26 |
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Alignment Details
Target: chr4 (Bit Score: 512; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 1 - 535
Target Start/End: Original strand, 40634703 - 40635238
Alignment:
| Q |
1 |
agaaattcttgtataaatgtcggataccacaaattatgcgtactaagtcaaacaaagctaaatgattcataagtcttttgtgcctaaatatttatttatt |
100 |
Q |
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| T |
40634703 |
agaaattcttgtataaatgtcggataccacaaattatgcgtactaagtcaaacaaagctaaatgattcataagtcttttgtgcctaaatatttatttatt |
40634802 |
T |
|
| Q |
101 |
caaa-tgatcatatatcagttgttaattcgcttagaagaatatcttgatcttcaaatggctgtgttttgaattgtgtaggcattacatgcaagttgggag |
199 |
Q |
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| T |
40634803 |
caaaatgatcatatatcaattgttaattcgcttagaagaatatcttgatcttcaaatggctgtgttttgaattgtgtaggcattacatgcaagttgggag |
40634902 |
T |
|
| Q |
200 |
ccaaggcattctaggtactgtcacaaatttccatcgcaacagtatgtaaaagttggaactgttcttcgccaattcgggtatacagtggtagctctacatg |
299 |
Q |
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| T |
40634903 |
ccaaggcattctaggtactgtcacaaatttccatcgcaacagtatgtaaaagttggaactgttcttcgccaattcgggtatacagtggtagctctacatg |
40635002 |
T |
|
| Q |
300 |
gctgtttgagaacagaaattcaggtagggtaacatctgagttcttaacataattttgaccattttgtgaatctgtacctgatcacggtttagcatctcat |
399 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |
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| T |
40635003 |
gctgtttgagaacagaaattcaggtagggtaacatctgagttcttaacataattttgaccattttgtgaatctgtacctgatcacagtttagcatttcat |
40635102 |
T |
|
| Q |
400 |
ttgataaatgacagtgatacctttatattctttgatggaattaccactttgactagtccaaatagtagttatatttataagtgggacaatcaccacccca |
499 |
Q |
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| T |
40635103 |
ttgataaatgacagtgatacctttatattctttgatggaattaccactttgactagtccaaatagtagttatatttataagtgggacaatcaccacccca |
40635202 |
T |
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| Q |
500 |
tgaattagcttttggaattgaatgttaccagaatcc |
535 |
Q |
| |
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| T |
40635203 |
tgaattagcttttggaatcgaatgttaccagaatcc |
40635238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 162 - 357
Target Start/End: Original strand, 40646698 - 40646892
Alignment:
| Q |
162 |
tgttttgaattgtgtaggcattacatgcaagttgggagccaaggcattctaggtactgtcacaaatttccatcgcaacagtatgtaaaagttggaactgt |
261 |
Q |
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| T |
40646698 |
tgttttgaactgtgcaggcattacatggaagttgggagccaaggcattttaggtactgtcacaaatttccatgtcaacagtatgtaaaagttggaactgt |
40646797 |
T |
|
| Q |
262 |
tcttcgccaattcgggtatacagtggtagctctacatggctgtttgagaacagaaattcaggtagggtaacatctgagttcttaacataattttga |
357 |
Q |
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| T |
40646798 |
tcttcgtcaattcgggtatacagtggtagctctacatggttgtttgagaacagaaattcaggta-cataatatttgagttcttaacataaatttga |
40646892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 95; Significance: 3e-46; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 163 - 325
Target Start/End: Complemental strand, 4781005 - 4780843
Alignment:
| Q |
163 |
gttttgaattgtgtaggcattacatgcaagttgggagccaaggcattctaggtactgtcacaaatttccatcgcaacagtatgtaaaagttggaactgtt |
262 |
Q |
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||||||||||| |||| || ||||||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||||||||||| ||||| |
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| T |
4781005 |
gttttgaattggccaggcgttgcatgcaagttgggagccaaggcattctaggtactgtcacaaatttccatggcagcaatatgtaaaagttggagctgtt |
4780906 |
T |
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| Q |
263 |
cttcgccaattcgggtatacagtggtagctctacatggctgtttgagaacagaaattcaggta |
325 |
Q |
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||||| ||||| || || || ||||||||||| ||||||||||||||| | |||||||||||| |
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| T |
4780905 |
cttcgtcaatttggctacaccgtggtagctctgcatggctgtttgagatccgaaattcaggta |
4780843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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