View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11745_low_3 (Length: 764)
Name: NF11745_low_3
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11745_low_3 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 415; Significance: 0; HSPs: 10)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 1 - 467
Target Start/End: Original strand, 1961829 - 1962297
Alignment:
| Q |
1 |
atgagttctagtcttggctctgtggttgctaattaaagcatctttcttgccttcttttgcagcccttctaattccaaaggcgacatgtgcactctcaatc |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
1961829 |
atgagttctagtcttggctctgtggttgctaattaaagcatctttcttgccttcttttgcagcccttctaattccaaaggcaacatgtgcactctcaatc |
1961928 |
T |
|
| Q |
101 |
tataaggcgagccaaaattgataagttgtctctatattgtcaaatctaatacaaacccttggcttccaagaacatctgaaaatgtcatgtttgatcaaac |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
1961929 |
tataaggcgagccaaaattgataagttgtctctatattgtcaaatctaatacaaacccttggcttccaagaacatttgaaaatgtcatgtttgatcaaac |
1962028 |
T |
|
| Q |
201 |
tccccaaataaagtaacctggcaaatgaatagtagaattaaaaattatatttatccaataattgtattcctaatataaaaatgataatgatcactaaata |
300 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1962029 |
tcccaaaataaagtaacctggcaaatgaatagtagaattaaaaattatatttatccaataattgtattcctaatataaaaatgataatgatcactaaata |
1962128 |
T |
|
| Q |
301 |
aaagtc--nnnnnnnnnccataccaataaataaccagaatgtggcaagtaataaaattcagaagtcaaggctgcgctgtttggtcaatggttggggtgaa |
398 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1962129 |
aaagtctttttttttttccataccaataaataaccagaatgtggcaagtaataaaattcagaagtcaaggctgcgctgtttggtcaatggttggggtgaa |
1962228 |
T |
|
| Q |
399 |
agtctgacctgtttgtggtttttacccaattctgtgtgctggacacaaagatacactttgtgcctgttt |
467 |
Q |
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| T |
1962229 |
agtctgacctgtttgtggtttttacccaattctgtgtgctggacacaaagatacacttggtgcctgttt |
1962297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 470 - 764
Target Start/End: Original strand, 1962277 - 1962566
Alignment:
| Q |
470 |
agatacacttggtgcctgttttgttcttcccaacatgtgtggctcttattcagtcgttttgaaacttctcaaacatatacataatgttgattttgcagaa |
569 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1962277 |
agatacacttggtgcctgttttgttcttcccaacatgtgtggctcttattcattcgttttgaaacttctcaaacatatacataatgttgattttgcagaa |
1962376 |
T |
|
| Q |
570 |
catgtataggtagttgagttgagttctgtttttggttttcctttcacaagcatnnnnnnntattaacttataagctgtaaactaagaacaaattttcatg |
669 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
1962377 |
catgtataggtagttgagtt-----ctgtttttggttttcctttcacaagcataaaaaaatattaacttataagctgtaaactaagaacaaattttcatg |
1962471 |
T |
|
| Q |
670 |
gagaaaacagttcatattgcagttgttcctggtgttggatatagccacttattcccaattcttcaattctccaaactacttgttcagcttcatcc |
764 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1962472 |
gagaaaacagttcatattgcagttgttcctggtgttggatatagccacttattcccaattcttcaattctccaaactacttgttcagcttcatcc |
1962566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 635 - 764
Target Start/End: Complemental strand, 2019375 - 2019246
Alignment:
| Q |
635 |
acttataagctgtaaactaagaacaaattttcatggagaaaacagttcatattgcagttgttcctggtgttggatatagccacttattcccaattcttca |
734 |
Q |
| |
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|||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |||||||| |
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| T |
2019375 |
acttataagctgtaaactaataactaattttcatggagaaaacagttcatattgcagttgttccaggtgttggatatggccacttattcccgattcttca |
2019276 |
T |
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| Q |
735 |
attctccaaactacttgttcagcttcatcc |
764 |
Q |
| |
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||||||||| |||||||||||||||||||| |
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| T |
2019275 |
attctccaagctacttgttcagcttcatcc |
2019246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 489 - 764
Target Start/End: Complemental strand, 2016143 - 2015863
Alignment:
| Q |
489 |
tttgttcttcccaacatgtgtggctcttattcagtcgttttgaaacttctcaaacatatacataatgttgattttgcagaacatgtataggtagttgagt |
588 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| |||||||||||||| ||||||| ||||||||||| |||||||||| |||||| |||||| ||||| |
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| T |
2016143 |
tttgttcttcccatcatgtgtggctcttattca-tcgttttgaaacttgtcaaacacatacataatgtcaattttgcagagcatgtagaggtaggtgagt |
2016045 |
T |
|
| Q |
589 |
tgagttctgtttttggttttcctttcacaagcatnnnnnnntattaac-----------ttataagctgtaaactaagaacaaattttcatggagaaaac |
677 |
Q |
| |
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| |||||||||||||||||||||||||||| | || |||||||| |||||||||||||||||||| ||||||||||| |
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| T |
2016044 |
t-----ctgtttttggttttcctttcacaagcataaaaaaaaaaaaaaaaaaaaaaaagttataagcggtaaactaagaacaaatttttatggagaaaac |
2015950 |
T |
|
| Q |
678 |
agttcatattgcagttgttcctggtgttggatatagccacttattcccaattcttcaattctccaaactacttgttcagcttcatcc |
764 |
Q |
| |
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| ||||||||||||||||||| ||||||||||||||||| || || | ||||||||||||||||| |||||||||||||||||| |
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| T |
2015949 |
aattcatattgcagttgttccaggtgttggatatagccatttggtctctattcttcaattctccaagagacttgttcagcttcatcc |
2015863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 639 - 764
Target Start/End: Complemental strand, 2013522 - 2013396
Alignment:
| Q |
639 |
ataagctgtaaactaag-aacaaattttcatggagaaaacagttcatattgcagttgttcctggtgttggatatagccacttattcccaattcttcaatt |
737 |
Q |
| |
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|||||||||||||||| ||||||||| ||||||||||| | ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |
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| T |
2013522 |
ataagctgtaaactaaacaacaaatttccatggagaaaaaaattcatattgcagttgttccaggtgttggatatagtcacttattcccaattcttcaatt |
2013423 |
T |
|
| Q |
738 |
ctccaaactacttgttcagcttcatcc |
764 |
Q |
| |
|
|| || |||||||||||||||||||| |
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| T |
2013422 |
ttcgaagctacttgttcagcttcatcc |
2013396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 658 - 764
Target Start/End: Complemental strand, 2008955 - 2008849
Alignment:
| Q |
658 |
caaattttcatggagaaaacagttcatattgcagttgttcctggtgttggatatagccacttattcccaattcttcaattctccaaactacttgttcagc |
757 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||| ||||||||||||||||| ||||||||||| |
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| T |
2008955 |
caaatttccatggagaaaacagttcatattgcagttgttccaggtgttggatatagccatttggtccctattcttcaattctccaagagacttgttcagc |
2008856 |
T |
|
| Q |
758 |
ttcatcc |
764 |
Q |
| |
|
||||||| |
|
|
| T |
2008855 |
ttcatcc |
2008849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 658 - 764
Target Start/End: Original strand, 1968060 - 1968166
Alignment:
| Q |
658 |
caaattttcatggagaaaacagttcatattgcagttgttcctggtgttggatatagccacttattcccaattcttcaattctccaaactacttgttcagc |
757 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| || || |||| ||||||||||||||||| ||||||||| | |
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| T |
1968060 |
caaatttccatggagaaaacagttcatattgcagttgttccaggtgttggatatagtcatttggtccctattcttcaattctccaagagacttgttcaac |
1968159 |
T |
|
| Q |
758 |
ttcatcc |
764 |
Q |
| |
|
||||||| |
|
|
| T |
1968160 |
ttcatcc |
1968166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 657 - 764
Target Start/End: Complemental strand, 2005576 - 2005469
Alignment:
| Q |
657 |
acaaattttcatggagaaaacagttcatattgcagttgttcctggtgttggatatagccacttattcccaattcttcaattctccaaactacttgttcag |
756 |
Q |
| |
|
|||| ||| ||||||||||||| ||||||||||||||||||| ||||||||||||||||| || || | ||||||||||||||||| ||||||||| |
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| T |
2005576 |
acaagtttccatggagaaaacaattcatattgcagttgttccaggtgttggatatagccatttggtctctattcttcaattctccaagagacttgttcaa |
2005477 |
T |
|
| Q |
757 |
cttcatcc |
764 |
Q |
| |
|
|||||||| |
|
|
| T |
2005476 |
cttcatcc |
2005469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 663 - 764
Target Start/End: Complemental strand, 2012565 - 2012464
Alignment:
| Q |
663 |
tttcatggagaaaacagttcatattgcagttgttcctggtgttggatatagccacttattcccaattcttcaattctccaaactacttgttcagcttcat |
762 |
Q |
| |
|
||||||||| |||||| |||| ||||| |||||||| ||||| || ||| | |||||| |||| |||||||| ||||| || ||||| | ||||||||| |
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|
| T |
2012565 |
tttcatggataaaacaattcacattgccgttgttccaggtgtcgggtatggacacttagtccctattcttcatttctcaaagttacttatccagcttcat |
2012466 |
T |
|
| Q |
763 |
cc |
764 |
Q |
| |
|
|| |
|
|
| T |
2012465 |
cc |
2012464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 660 - 739
Target Start/End: Original strand, 1964500 - 1964581
Alignment:
| Q |
660 |
aattttcatggagaaaacagttcatattgcagttgttcctggtgttgg--atatagccacttattcccaattcttcaattct |
739 |
Q |
| |
|
||||| |||||||||||| |||| |||||||||||||| |||||||| ||||| ||| ||| || | ||||||||||||| |
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|
| T |
1964500 |
aatttccatggagaaaaccattcacattgcagttgttccaggtgttgggtatatatccatttagtctctattcttcaattct |
1964581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 5e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 657 - 764
Target Start/End: Original strand, 5901638 - 5901745
Alignment:
| Q |
657 |
acaaattttcatggagaaaacagttcatattgcagttgttcctggtgttggatatagccacttattcccaattcttcaattctccaaactacttgttcag |
756 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||| ||| |||| |||| | | |||||||| ||| || | |||||| |||||||||| |||||||||||| |
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|
| T |
5901638 |
acaaattttcatggagaaaacaattcacattgctgttattccaggtgcttggtatagccatttagtctctattcttgaattctccaagctacttgttcag |
5901737 |
T |
|
| Q |
757 |
cttcatcc |
764 |
Q |
| |
|
|| ||||| |
|
|
| T |
5901738 |
ctccatcc |
5901745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 658 - 740
Target Start/End: Original strand, 18189425 - 18189507
Alignment:
| Q |
658 |
caaattttcatggagaaaacagttcatattgcagttgttcctggtgttggatatagccacttattcccaattcttcaattctc |
740 |
Q |
| |
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||||||| |||||| |||||| |||| |||||||||||||| |||||||| ||| | |||||| |||| |||||||||||||| |
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| T |
18189425 |
caaatttccatggataaaacaattcacattgcagttgttccaggtgttgggtatggacacttagtccctattcttcaattctc |
18189507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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