View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11745_low_30 (Length: 540)
Name: NF11745_low_30
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11745_low_30 |
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Alignment Details
Target: chr7 (Bit Score: 459; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 13 - 536
Target Start/End: Complemental strand, 38279154 - 38278631
Alignment:
| Q |
13 |
atgaatacttggtgaatggaatgagtttgtctgnnnnnnnctgcacaggtaactttgaatatttagtaagaatt-attgtatactttaacaacattgtca |
111 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
38279154 |
atgaatacttggtgaatggaatgagtttgtctgaaaaaa-ctgcacaggtaactttgaatatttagtaagaatttattgtatactttaacaacattgtca |
38279056 |
T |
|
| Q |
112 |
cattcatcagaagagttgatgcgagaagaagccgtcttcaacttaaccctagaatcagttaaatttgggatatgaaatatccaattctaaatgcttgttg |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38279055 |
cattcatcagaagagttgatgcgagaagaagccgtcttcgacttaaccctagaatcagttaaatttgggatatgaaatatccaattctaaatgcttgttg |
38278956 |
T |
|
| Q |
212 |
gcaatttctttagttgggtcatataacttctttttagcctctttagtcattagtcttgccgcttttggtttcatcactctcccaatcctatgagcaaatc |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |
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| T |
38278955 |
gcaatttctttagttgggtcatataacttctttttagcctctttagtcattagtcttgccgcttttggtttaatcactcccccaatcctatgagcaaatc |
38278856 |
T |
|
| Q |
312 |
tctttgagatataagcttcatcttgttcgtttggatgaacatctgccttaaggcatccaacacaactaagatcatcatcaaataatgatacattgagatc |
411 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
38278855 |
tctttgagatataagcttcatcttgttcgtttggatgcacatctgccttaagccatccaacataactaagatcatcatcaaataatgatacattgagatc |
38278756 |
T |
|
| Q |
412 |
tataaagactttcaaaccagaccattctattctcaaaattaacaccttcagttgtttggactcggtaaaatgataatgatcaatatcagagtaatcttct |
511 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
38278755 |
tataaagactttcaaaccagaccattctattctcaaaattaacaccttcagttgtttggactcagtaaaatgataatgatcaatatcagagtaatcttct |
38278656 |
T |
|
| Q |
512 |
agatacttagatgtgatagagatca |
536 |
Q |
| |
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|||||||||||||||| |||||||| |
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| T |
38278655 |
agatacttagatgtgaaagagatca |
38278631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 75 - 530
Target Start/End: Complemental strand, 38271210 - 38270749
Alignment:
| Q |
75 |
ttagtaagaatt-attgtatactttaacaacattgtcacattcatcagaag----agttgatgcgagaagaagccgtcttcaacttaaccctagaatcag |
169 |
Q |
| |
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|||||||||||| ||||||||| |||| ||||| ||||||||||| ||| | ||| ||||||||||| |||||||| | ||||| ||||||||| |
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| T |
38271210 |
ttagtaagaatttattgtataccttaaaaacatcatcacattcatctgaatgtgaaattggtgcgagaagaaaccgtcttcgatttaactttagaatcag |
38271111 |
T |
|
| Q |
170 |
ttaaatttgggatatgaaatatccaattctaaatgcttgttggcaatttctttagttgggtcatataacttctttttagcctctttagtcattagtcttg |
269 |
Q |
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| T |
38271110 |
ttaaatttgagatgtgaaatagccaattctaaatgcttgttggcaatttctttagttgggtcatgtaacttcttcttagcctctttagtcattagttgtg |
38271011 |
T |
|
| Q |
270 |
ccgcttttggtttcatcactctcccaatcctatgagcaaatctctttgagatataagcttcatcttgttcgtttggatgaacatctgccttaaggcatcc |
369 |
Q |
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||||||||||||| ||||||| ||||||||||||||||||| | | | | |||||| ||||||||||||| |||||||| |||||| ||||||||||||| |
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| T |
38271010 |
ccgcttttggtttaatcactcccccaatcctatgagcaaatatatat-atatataaacttcatcttgttcatttggatgcacatcttccttaaggcatcc |
38270912 |
T |
|
| Q |
370 |
aacacaactaagatcatcatcaaataatgatacattgagatctataaagactttcaaaccagaccattctattctcaaaattaacaccttcagttgtttg |
469 |
Q |
| |
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|||| | ||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||| |
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| T |
38270911 |
aacatatctaagattatcatcaaataatgatacattgaaatctacaaagactttcaaaccagacc-----gttcacaaaattaacaccttcagttgtttg |
38270817 |
T |
|
| Q |
470 |
gactcggtaaaatgataat-------gatcaatatcagagtaatcttctagatacttagatgtgatag |
530 |
Q |
| |
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||||| ||||||| ||||| |||||||||||| ||||||||||||||||||||||||||||| |
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| T |
38270816 |
gactcagtaaaataataattactaaagatcaatatcagtgtaatcttctagatacttagatgtgatag |
38270749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 74 - 398
Target Start/End: Complemental strand, 38274963 - 38274660
Alignment:
| Q |
74 |
tttagtaagaatt-attgtatactttaacaacattgtcacattcatcagaagagttgatgcgagaagaagccgtcttcaacttaaccctagaatcagtta |
172 |
Q |
| |
|
||||||||||||| ||||||||| |||||||||| |||||||||| |||||| |||||||||||||||||| ||||| |||||| |||||||||||||| |
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| T |
38274963 |
tttagtaagaatttattgtataccttaacaacatcatcacattcataagaagaattgatgcgagaagaagcc-tcttcgacttaatcctagaatcagtta |
38274865 |
T |
|
| Q |
173 |
aatttgggatatgaaatatccaattctaaatgcttgttggcaatttctttagttgggtcatataacttctttttagcctctttagtcattagtcttgccg |
272 |
Q |
| |
|
|||||| || ||||||| ||||||||||||||||||| |||||||| |||||| | ||||||||||||||| |||| |||||||||||||||| ||||| |
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| T |
38274864 |
aatttgacatgtgaaatagccaattctaaatgcttgtttgcaatttcattagttagctcatataacttctttatagcatctttagtcattagtcgtgccg |
38274765 |
T |
|
| Q |
273 |
cttttggtttcatcactctcccaatcctatgagcaaatctctttgagatataagcttcatcttgttcgtttggatgaacatctgccttaaggcatccaac |
372 |
Q |
| |
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||||| |||| ||||||| || || || ||||||||||||||||||| ||||||| |||||||||||| ||| |||||| |
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| T |
38274764 |
cttttcgtttaatcactcccctaaccc---------------------tataagcttcatcttgttcacttggatgcacatctgccttatggcgtccaac |
38274686 |
T |
|
| Q |
373 |
acaactaagatcatcatcaaataatg |
398 |
Q |
| |
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| |||||||||||||||||||||||| |
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|
| T |
38274685 |
ataactaagatcatcatcaaataatg |
38274660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 329 - 373
Target Start/End: Original strand, 44592314 - 44592358
Alignment:
| Q |
329 |
tcatcttgttcgtttggatgaacatctgccttaaggcatccaaca |
373 |
Q |
| |
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||||||||||| ||||||||||||||| | ||||| ||||||||| |
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|
| T |
44592314 |
tcatcttgttcatttggatgaacatcttctttaagacatccaaca |
44592358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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