View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11745_low_32 (Length: 522)
Name: NF11745_low_32
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11745_low_32 |
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| [»] scaffold0049 (1 HSPs) |
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Alignment Details
Target: scaffold0049 (Bit Score: 461; Significance: 0; HSPs: 1)
Name: scaffold0049
Description:
Target: scaffold0049; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 7 - 506
Target Start/End: Original strand, 63820 - 64319
Alignment:
| Q |
7 |
agtgtcggtgtcagacaccggaacacacctaatcttcatagattactacataaaggatgatgatgacatattgctatgaacattgcatcccagtaatgaa |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
63820 |
agtgtcggtgtcagacaccggaacacacctaatcttcatagattactacataaaggatgatgatgacatattgctatgaacattgcatcccagtaatgaa |
63919 |
T |
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| Q |
107 |
aatcagagtcaaaaactcatagtcgaatgagaaattgaaacacagtcagaagctcagagagcgagcagtgtcattctaagtcaatgcaagt-gtgaatta |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||| |
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| T |
63920 |
aatcagagtcaaaaactcatagtcgaatgagaaattgaaacacagtcagaagctcagatagcgagcagtgtcattccaagtcaatgcaagttgtgaatta |
64019 |
T |
|
| Q |
206 |
agcaagtatcatgaacataaaccaaacacttaatttatatcactttcatttcttatcagatctgaaacaaaagaaaacaatatcaaacacataccatttg |
305 |
Q |
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|||||||||||||| | ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
64020 |
agcaagtatcatgacc-taaaccaaacacttaatttatatcattttcaattcttatcagatctgaaacaaaagaaaacaatatcaaacacataccatttg |
64118 |
T |
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| Q |
306 |
tttttgcttttgttgtgaagatatcttaagaatgaatgtttcaacccatagctcctgcaattgcaattgcatagttttatattacattcaacttgtctgc |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
64119 |
tttttgcttttgttgtgaagatatcttaagaatgaatgtttcaacccatagctcctgcaattgcaattgcatagttttatattacattcaacttgtctgc |
64218 |
T |
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| Q |
406 |
aagaaacattaattaagatttaaatccaaatttccatcaaagagagattcttatattcataatctagttgcaggatcaaacccagttgggtttcaagtta |
505 |
Q |
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| T |
64219 |
aagaaacattaattaagatttaaatccaaatttccatcaaagagagattcttatattcataatctagttgtaggatcaaacccagttgggtttcaagtta |
64318 |
T |
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Target: chr3 (Bit Score: 72; Significance: 2e-32; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 206 - 373
Target Start/End: Complemental strand, 22900595 - 22900429
Alignment:
| Q |
206 |
agcaagtatcatgaacataaaccaaacacttaatttatatcactttcatttcttatcagatctgaaacaaaagaaaacaatatcaaacacataccatttg |
305 |
Q |
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|||||||||||||| |||||||||| |||| ||||||| | || ||||||||||| ||| || ||||||| ||||||||| ||||||||||| |||| |
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| T |
22900595 |
agcaagtatcatgaccataaaccaa-cactgaatttatgttgctaccatttcttatctgatatgtaacaaaataaaacaataagaaacacataccgtttg |
22900497 |
T |
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| Q |
306 |
tttttgcttttgttgtgaagatatcttaagaatgaatgtttcaacccatagctcctgcaattgcaatt |
373 |
Q |
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|| || |||||| ||| |||||| ||| |||||||||| ||||||||||||||||| ||||||||||| |
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| T |
22900496 |
ttgtttcttttgctgtcaagataccttgagaatgaatgattcaacccatagctcctacaattgcaatt |
22900429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 319 - 373
Target Start/End: Original strand, 48214122 - 48214177
Alignment:
| Q |
319 |
tgtgaagatatcttaagaatgaatgtttc-aacccatagctcctgcaattgcaatt |
373 |
Q |
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|||||||||||||| |||||||||| ||| ||| ||||||||||||||||| |||| |
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| T |
48214122 |
tgtgaagatatcttgagaatgaatgattcaaactcatagctcctgcaattggaatt |
48214177 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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