View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11745_low_33 (Length: 520)
Name: NF11745_low_33
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11745_low_33 |
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Alignment Details
Target: chr3 (Bit Score: 441; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 12 - 505
Target Start/End: Original strand, 384409 - 384902
Alignment:
| Q |
12 |
gagaagaaggaagctattgatcataggaacaacggttcgaagtcacctccaacattctgactaatgatctccaacccgacacgattcacaactacctaat |
111 |
Q |
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| T |
384409 |
gagaagaaggaagctattgatcataggaacaacggttcgaagtcacctccaacattccgactaatgatctccaatccgacacgattcacaactacctaat |
384508 |
T |
|
| Q |
112 |
gataatttgaatataaacatcaacaacaacaacaaagtnnnnnnntaattgaggagttatgaagaactaaccgtaacaaaaatacgagctctgataacaa |
211 |
Q |
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| T |
384509 |
gataatttgaatataaacatcaacaacaacaacaaagtaaaaaaatagttgaggagttatgaagaactaactgtaacaaaaatacgagctctgataacaa |
384608 |
T |
|
| Q |
212 |
gaggaaaagacacattagggttagcaaaatccctaaaaagccttcttaaaagaaacggaagatcacgtaatctctcagcaatactagcattagattgttc |
311 |
Q |
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| T |
384609 |
gaggaaaagacacattagggttagcaaaatccctaaaaagccttcttaaaagaaacggaagatcacgtaatctctcagcaatactagcattagattgttc |
384708 |
T |
|
| Q |
312 |
accaaaaagacgattatatttctgaatatcacccagaagacgatcctgctcataattgttgttgtcgacaacgtcagtgggaagaagaagattaatagga |
411 |
Q |
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| T |
384709 |
accaaaaagacgattatatttctgaatatcacccagaagactatcctgctcataattgttgttgtcgacaacgtcagtgggaagaagaagattaatagga |
384808 |
T |
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| Q |
412 |
tgacgacaaagaggacatttgcaaggctgaagaggagaataatattgccaaacttggataatacagtttgcacaaaaccagtgagaacaatttg |
505 |
Q |
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| T |
384809 |
cgacgacaaagaggacatttgcaaggttgaagaggagaagaatattgccaaacttggataatacagtttgcacaaaaccagtgagaacaatttg |
384902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 173 - 505
Target Start/End: Original strand, 389947 - 390282
Alignment:
| Q |
173 |
aagaactaaccgtaacaaaaatacgagctctgataacaagaggaaaagacacattagggttagcaaaatccctaaaaagccttcttaaaagaaacggaag |
272 |
Q |
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||||||||||||||| |||| ||||||||| ||||||||||||| ||| |||||||||| |||||||| ||||||||||| | |||||||| ||||| |
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| T |
389947 |
aagaactaaccgtaatgaaaacacgagctctaataacaagaggaagagaagtattagggttaacaaaatccttaaaaagccttttcaaaagaaaaggaag |
390046 |
T |
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| Q |
273 |
atcacgtaatctctcagcaatactagcattagattgttcaccaaaaagacgattatatttctgaatatcacccaga---agacgatcctgctcataattg |
369 |
Q |
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| T |
390047 |
atcacgtaatctctgaacaatactagcattagattgttggccaaaaacacggttatatctttgaatatcagccaaattcaaacgatcttgctcagaattg |
390146 |
T |
|
| Q |
370 |
ttgttgtcgacaacgtcagtgggaagaagaagattaataggatgacgacaaagaggacatttgcaaggctgaagaggagaataatattgccaaacttgga |
469 |
Q |
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| T |
390147 |
gcgtcgtctacgacgtcggtgggaacaagaaggttaataggacgacgacagagaggacatttgcaaggttgaagaggagaagaatactgccaaacttgga |
390246 |
T |
|
| Q |
470 |
taatacagtttgcacaaaaccagtgagaacaatttg |
505 |
Q |
| |
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| T |
390247 |
ttatgcagttagcgcaaaaccagtgagaacaatttg |
390282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 97 - 146
Target Start/End: Original strand, 389857 - 389908
Alignment:
| Q |
97 |
tcacaactacctaatgat--aatttgaatataaacatcaacaacaacaacaa |
146 |
Q |
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|||| ||||||||||||| |||||||| ||||||| ||||||||||||||| |
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| T |
389857 |
tcacgactacctaatgatttaatttgaacataaacaacaacaacaacaacaa |
389908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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