View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11745_low_34 (Length: 511)
Name: NF11745_low_34
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11745_low_34 |
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Alignment Details
Target: chr5 (Bit Score: 470; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 1 - 495
Target Start/End: Original strand, 43001956 - 43002452
Alignment:
| Q |
1 |
aaccaaaacaaattaggctaatgcaaagaagaaaatcttttatgaaatatgtaacatttgatatcattagtaatat--attaaattcccctaaaaaataa |
98 |
Q |
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| T |
43001956 |
aaccaaaacaaattaggctaatgcaaagaagaaaatcttttatgaaatatgtaacatttgatatcattagtaatatatattaaattcccctaaaaaataa |
43002055 |
T |
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| Q |
99 |
tacatcaaatgctggggtaatattcattttggtcagtgaatgtgtaacagtgtctggtgtaggtgtggaacatgttggtggagacatgtttgtgagtgtt |
198 |
Q |
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| T |
43002056 |
tacattaaatgctggggtaatattcattttggtcactgaatgtgtaacggtgtctggtgtaggtgtggaacatgttggtggagacatgtttgtgagtgtt |
43002155 |
T |
|
| Q |
199 |
ccaaaagctgatgccattttcatgaaggtgatgttattgatttgaagctacttaattgcttttctagtttatttccaatatatttcatttattttgagaa |
298 |
Q |
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| T |
43002156 |
ccaaaagctgatgccattttcatgaaggtgattttattgatttgaagctacttaattgcttttctagtttatttccaatatatttcatttattttgagaa |
43002255 |
T |
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| Q |
299 |
gaagaaaaccaagtttatgttttatgaatgcagtggatatgtcatgattggaatgatgagcaatgcttgaaatttttgaagaattgctatgattctcttc |
398 |
Q |
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| T |
43002256 |
gaagaaaaccaagtttatgttttatgaatgcagtggatatgtcatgattggaatgatgagcaatgcttgaaatttttgaagaattgctatgattctcttc |
43002355 |
T |
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| Q |
399 |
ctgccacagggaaggtgattgcagtggaatgcattattccaataattcctgactcaaacttggcctcaaaatctgtttttcaaatggatgctatcat |
495 |
Q |
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| T |
43002356 |
ctgccacagggaaggtgattgcagtggaatgcattattccaataattcctgactcaaacttggcctcaaaatctgtttttcaaatggatgctatcat |
43002452 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 330 - 390
Target Start/End: Complemental strand, 42473627 - 42473567
Alignment:
| Q |
330 |
agtggatatgtcatgattggaatgatgagcaatgcttgaaatttttgaagaattgctatga |
390 |
Q |
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| T |
42473627 |
agtggatttgtcatgactggagtgatgagcactgcttgaaatttttgaagaactgctatga |
42473567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 155 - 228
Target Start/End: Complemental strand, 42474039 - 42473966
Alignment:
| Q |
155 |
gtgtaggtgtggaacatgttggtggagacatgtttgtgagtgttccaaaagctgatgccattttcatgaaggtg |
228 |
Q |
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| T |
42474039 |
gtgtaggagttgagcatgttggtggagacatgtttgtcagtattccaaaggctgatgctgtttttatgaaggtg |
42473966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 327 - 391
Target Start/End: Complemental strand, 49106597 - 49106533
Alignment:
| Q |
327 |
tgcagtggatatgtcatgattggaatgatgagcaatgcttgaaatttttgaagaattgctatgat |
391 |
Q |
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| T |
49106597 |
tgcagtggatacttcatgattggagtgatgaacaatgcttgaagcttttgaagaactgctatgat |
49106533 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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