View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11745_low_36 (Length: 500)
Name: NF11745_low_36
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11745_low_36 |
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Alignment Details
Target: chr5 (Bit Score: 456; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 14 - 485
Target Start/End: Original strand, 2820174 - 2820645
Alignment:
| Q |
14 |
aggctagaatgtatttctcactcacagaccacgcgtatccttcaatataaactttgtatctgatatcaaggaaaatcaaatacatatatatacatattat |
113 |
Q |
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| T |
2820174 |
aggctagaatgtatttctcactcacagaccacgcgtatccttcaatataaactttgtatctgatatcaaggaaaatcaaatacatacatatacatattat |
2820273 |
T |
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| Q |
114 |
attaatttaaatgtacatgatgaattttgggataaaaaataaaacatatgtgatctgagattaaatggaactacctatatgtacattggtctgccaagtt |
213 |
Q |
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| T |
2820274 |
attaatttaaatgtagatgatgaattttgggataaaaaataaaacatatgtgatctgagattaaatggaactacctatatgtacattggtctgccaagtt |
2820373 |
T |
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| Q |
214 |
tgagtgattgaatccttgctcagactctttaatccaatcctacatatttgtgacaaaatatcatcattttgtatactgatatgtgttataacttatcaga |
313 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2820374 |
tgagtgattgaatccttgttcagactctttaatccaatcctacatatttgtgacaaaatatcatcattttgtatactgatatgtgttataacttatcaga |
2820473 |
T |
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| Q |
314 |
aagcctttagatatgtctgtacctgcgtaaataaacgaagattccaatcctgtgcggttgaaacattacaattgaggaagtctagtcgtgttgcggcagt |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2820474 |
aagcctttagatatgtctgtacctgcgtaaataaacgaagattccaatcctgtgcggttgaaacattacaattgaggaagtctagtcgtgttgcggcagt |
2820573 |
T |
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| Q |
414 |
atacggatttcctttccaataagcataaggttctctgtctttccatttaacccttttgtttcccttttttat |
485 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
2820574 |
atacggatttcctttccaataagcataaggttctctgtctttccatttaacccttttgttccccttttttat |
2820645 |
T |
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