View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11745_low_37 (Length: 498)
Name: NF11745_low_37
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11745_low_37 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 414; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 19 - 467
Target Start/End: Complemental strand, 25537885 - 25537434
Alignment:
| Q |
19 |
caagggactgtgcggtgaaggtttgttggatgaaagccgagagttgccgaacctagctatgattcgtgatattttcgctgaagtttttaagagtgtttgg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25537885 |
caagggactgtgcggtgaaggtttgttggatgaaagccgagagttgccgaacctagctatgattcgtgatattttcgctgaagtttttaagagtgtttgg |
25537786 |
T |
|
| Q |
119 |
aaggtttttcctaagattattttcatat---gtaaggtcttagaaataagagggtttttcctaaaatttcagggctagttacatagtcaaatgttgtaat |
215 |
Q |
| |
|
|||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25537785 |
aaggtttttcctaagattcttttcatattgtgtaaggtcttagaaataagagggtttttcctaaaatttcagggctagttacatagtcaaatgttgtaat |
25537686 |
T |
|
| Q |
216 |
gtgtcagtctttatatgaacaagtattcaagggatgttctgtccctttccttcatatgaatgaatgtgttgccaaagagctaaatgaaattaagttaaag |
315 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| |
|
|
| T |
25537685 |
gtgtcggtctttatatgaacaagtattcaagggatgttctgtccctttccttcatatgaatgagtgtgttgccaaagagataaatgaaattaagttaaag |
25537586 |
T |
|
| Q |
316 |
ccccttgaagctgctagtccttttgctttgaggattcgagagatagatgaaagtgattagatgagactttgagtaagggtgaatttcaaaccttttcagc |
415 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25537585 |
ccccttgaagttgctagtccttttgctttgaggattcgagagatagataaaagtgattagatgagactttgagtaagggtgaatttcaaaccttttcagc |
25537486 |
T |
|
| Q |
416 |
ttgttaaaaccgagatgaagaggtaacattcctcaatgaaacaggttgctga |
467 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25537485 |
ttgttaaaaccgagatgaagaggtaacattcctcaatgaaacaggttgctga |
25537434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 152 - 314
Target Start/End: Complemental strand, 25525228 - 25525063
Alignment:
| Q |
152 |
gtcttagaaataagagggtttttcctaaaatttcaggg-ctagttacatagtcaaatgttgtaatgtgtcag--tctttatatgaacaagtattcaaggg |
248 |
Q |
| |
|
|||||||||||||||||||||||| ||| | ||| ||| |||||||| | |||| | | |||||||||| |||| ||||||||| |||||||||| |
|
|
| T |
25525228 |
gtcttagaaataagagggtttttcttaagaattctggggctagttacttggtcacacatcataatgtgtcacattcttgatatgaacacatattcaaggg |
25525129 |
T |
|
| Q |
249 |
atgttctgtccctttccttcatatgaatgaatgtgttgccaaagagctaaatgaaattaagttaaa |
314 |
Q |
| |
|
|||| |||||||||| |||||||||| ||| |||||||||||||||||||| |||| ||||||||| |
|
|
| T |
25525128 |
atgtcctgtcccttttcttcatatgactgagtgtgttgccaaagagctaaaggaaactaagttaaa |
25525063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 209 - 355
Target Start/End: Original strand, 25516924 - 25517072
Alignment:
| Q |
209 |
ttgtaatgtgtcag--tctttatatgaacaagtattcaagggatgttctgtccctttccttcatatgaatgaatgtgttgccaaagagctaaatgaaatt |
306 |
Q |
| |
|
||||||||||||| |||| |||||||||||||| |||||||||||||||||||| |||| |||| ||| |||||||||||||||||||| |||| | |
|
|
| T |
25516924 |
ttgtaatgtgtcacattcttgatatgaacaagtatcaaagggatgttctgtcccttttcttcttatggctgagtgtgttgccaaagagctaaaggaaact |
25517023 |
T |
|
| Q |
307 |
aagttaaagccccttgaagctgctagtccttttgctttgaggattcgag |
355 |
Q |
| |
|
||||||| | ||| |||| || |||||||| |||||||||||||||| |
|
|
| T |
25517024 |
aagttaaggacccatgaaactagaagtcctttggctttgaggattcgag |
25517072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 229 - 338
Target Start/End: Complemental strand, 44461174 - 44461065
Alignment:
| Q |
229 |
tatgaacaagtattcaagggatgttctgtccctttccttcatatgaatgaatgtgttgccaaagagctaaatgaaattaagttaaagccccttgaagctg |
328 |
Q |
| |
|
||||||||||||| || || |||||||| ||||| ||||||||| ||| |||||||| || ||||| || ||| |||||||||||| |||||||||| |
|
|
| T |
44461174 |
tatgaacaagtatccataggttgttctgttccttttcttcatatggctgagtgtgttgcaaaggagcttaaggaagctaagttaaagccacttgaagctg |
44461075 |
T |
|
| Q |
329 |
ctagtccttt |
338 |
Q |
| |
|
||||||||| |
|
|
| T |
44461074 |
gtagtccttt |
44461065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University