View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11745_low_38 (Length: 498)
Name: NF11745_low_38
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11745_low_38 |
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Alignment Details
Target: chr7 (Bit Score: 449; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 7 - 471
Target Start/End: Original strand, 44872198 - 44872662
Alignment:
| Q |
7 |
gttttttcaactgtaatgcagaggaaaaaattgttgctgctgctgtttgatgggattctctcgatagctttttcaactctaatggagacgaagaaattgg |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
44872198 |
gttttttcaactgtaatgcagaggaaaaaattgttgctgctgctgtttcatgggattctctcgatcgctttttcaactctaatggagacgaagaaattgg |
44872297 |
T |
|
| Q |
107 |
tgctgcagttgaagagtgtttgagggaacaccctccttgttcaatgcaaacatggcaggcttttctaagagtagtatagtttttggcattaggagaagta |
206 |
Q |
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| T |
44872298 |
tgctgcggttgaagagtgtttgagggaacaccctccttgttcaatgcaaacatggcaggcttttctaagagtagtatagtttttggcattaggagaagta |
44872397 |
T |
|
| Q |
207 |
taacgcaattcccacctacactttttgtcaatataccaaaacctccaacccaaataaaaaagatgttgttttgctttcaaagccaaatcctttcttctaa |
306 |
Q |
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| T |
44872398 |
taacgcaattcccacctacactttttgtcaatataccaaaacctccaacccaaataaaaaagatgttgttttgctttcaaagccaaatcctttcttctaa |
44872497 |
T |
|
| Q |
307 |
agctttctttacgatcttttaatcctgttaagcgataccattcaaacacagcttgtggacaatactcaggttctatgttgatatgaggaggtggtgaacg |
406 |
Q |
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| T |
44872498 |
agctttctttacgatcttttaatcctgttaagcgataccattcaaacacagcttgtggacaatactcaggttctatgttgatatgaggaggtggtgaacg |
44872597 |
T |
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| Q |
407 |
agaatccatatcaaaacctccaaactgtataccaatctgcacaaaaacactatttcaatgttatt |
471 |
Q |
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| T |
44872598 |
agaatccatatcaaaaactccaaactgtataccaatctgcacaaaaacactatttcaatgttatt |
44872662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 155; Significance: 4e-82; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 104 - 461
Target Start/End: Complemental strand, 47527371 - 47527011
Alignment:
| Q |
104 |
tggtgctgcagttgaagagtgtttgagggaacaccctccttgttcaatgcaaacatggcaggcttttctaagagtagtatagtttttggcatt---agga |
200 |
Q |
| |
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|||||||| |||||||| ||||||||||||||||||||||| |||||||||| | |||||||||| |||||||| ||| |||||| |||| |||| |
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| T |
47527371 |
tggtgctggagttgaagggtgtttgagggaacaccctccttcttcaatgcaactcttgcaggcttttttaagagtaatatggtttttcccattgttagga |
47527272 |
T |
|
| Q |
201 |
gaagtataacgcaattcccacctacactttttgtcaatataccaaaacctccaacccaaataaaaaagatgttgttttgctttcaaagccaaatcctttc |
300 |
Q |
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| T |
47527271 |
gaagtataacgcaattcccgcttaccatttttgtcaatgtaccataacttccaacccaaagaaagaagatgttgttttgctttcaaagtcaaatcctttc |
47527172 |
T |
|
| Q |
301 |
ttctaaagctttctttacgatcttttaatcctgttaagcgataccattcaaacacagcttgtggacaatactcaggttctatgttgatatgaggaggtgg |
400 |
Q |
| |
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| | | ||||||||| |||| | || |||||||||||| |||||||| ||||||| |||||||| ||||||| |||||||||||| ||||||| | |
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| T |
47527171 |
taccagcactttctttaggatcatgtagtcctgttaagcggtaccattctcttacagcttctggacaatgctcaggtactatgttgatatcaggaggtag |
47527072 |
T |
|
| Q |
401 |
tgaacgagaatccatatcaaaacctccaaactgtataccaatctgcacaaaaacactattt |
461 |
Q |
| |
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| T |
47527071 |
tgaacgagaatccatatcaaaaacttcaattcatataccaatctgcacaaaaacacaattt |
47527011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 34 - 448
Target Start/End: Complemental strand, 47522198 - 47521775
Alignment:
| Q |
34 |
aaattgttgctgctgctgtttgatgggattctctcgatagctttttcaactctaatggagacgaagaaattgg------tgctgcagttgaagagtgttt |
127 |
Q |
| |
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||||||||| | || |||||| | ||||||||||||| ||||||||||| || ||||| ||||||||||| |||||||||||||| | ||| |
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| T |
47522198 |
aaattgttgttccttctgtttcctcggattctctcgatctctttttcaactgtagtggaggcgaagaaattgacgttattgctgcagttgaagggcgttc |
47522099 |
T |
|
| Q |
128 |
gagggaacaccctccttgttcaatgcaaacatggcaggcttttctaagagtagtatagtttttggcatt---aggagaagtataacgcaattcccaccta |
224 |
Q |
| |
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| ||||||||||||||| |||||||||| | |||||||||||||||||| ||| |||||| |||| ||||||||||||||||||||||||| | |
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| T |
47522098 |
gggggaacaccctccttcttcaatgcaactctcacaggcttttctaagagtaatatggtttttcccattgttaggagaagtataacgcaattcccacttg |
47521999 |
T |
|
| Q |
225 |
cactttttgtcaatataccaaaacctccaacccaaataaaaaagatgttgttttgctttcaaagccaaatcctttcttctaaagctttctttacgatctt |
324 |
Q |
| |
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|| ||||||||||| ||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||| |||||| | | |||||||||||||||| |
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| T |
47521998 |
caatttttgtcaatgtaccaaaacttccaacccaaagaaagaagatgttgttttgctttcaaagccaaattctttctaccagcactttctttacgatctt |
47521899 |
T |
|
| Q |
325 |
ttaatcctgttaagcgataccattcaaacacagcttgtggacaatactcaggttctatgttgatatgaggaggtggtgaacgagaatccatatcaaaacc |
424 |
Q |
| |
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|| |||||||||||| |||||||| ||||||| |||||||| |||||||| ||||||||||| ||||||| |||||||||| ||||||||||| |
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| T |
47521898 |
gtagtcctgttaagcggtaccattctcttacagcttctggacaatgctcaggttttatgttgatatcaggaggtactgaacgagaagccatatcaaaaaa |
47521799 |
T |
|
| Q |
425 |
tccaaactgtataccaatctgcac |
448 |
Q |
| |
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|||||| ||||| ||||||||| |
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| T |
47521798 |
tccaaatcatatacaaatctgcac |
47521775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 60 - 105
Target Start/End: Complemental strand, 47527901 - 47527856
Alignment:
| Q |
60 |
gattctctcgatagctttttcaactctaatggagacgaagaaattg |
105 |
Q |
| |
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|||||||||| | ||| |||||||| |||||||||||||||||||| |
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| T |
47527901 |
gattctctcggttgctctttcaactgtaatggagacgaagaaattg |
47527856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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