View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11745_low_4 (Length: 690)

Name: NF11745_low_4
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11745_low_4
NF11745_low_4
[»] chr3 (7 HSPs)
chr3 (19-683)||(223057-223712)
chr3 (78-331)||(218198-218448)
chr3 (398-552)||(218020-218170)
chr3 (75-151)||(199215-199291)
chr3 (132-174)||(225259-225301)
chr3 (112-157)||(212309-212354)
chr3 (640-677)||(22729954-22729991)
[»] chr1 (3 HSPs)
chr1 (76-211)||(3809295-3809431)
chr1 (612-676)||(11098944-11099008)
chr1 (624-672)||(43965071-43965119)
[»] chr5 (2 HSPs)
chr5 (115-170)||(29839309-29839364)
chr5 (396-477)||(29839068-29839150)
[»] chr4 (2 HSPs)
chr4 (560-676)||(29728744-29728862)
chr4 (637-675)||(38450695-38450733)
[»] chr7 (4 HSPs)
chr7 (566-676)||(32002087-32002199)
chr7 (638-676)||(46976970-46977008)
chr7 (644-677)||(41437124-41437157)
chr7 (644-676)||(33084987-33085019)
[»] chr8 (3 HSPs)
chr8 (560-674)||(26413398-26413513)
chr8 (640-677)||(5589561-5589598)
chr8 (634-675)||(36665306-36665347)
[»] chr2 (4 HSPs)
chr2 (566-674)||(16452169-16452277)
chr2 (644-676)||(10429915-10429947)
chr2 (644-676)||(26849278-26849310)
chr2 (644-676)||(36959382-36959414)


Alignment Details
Target: chr3 (Bit Score: 540; Significance: 0; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 540; E-Value: 0
Query Start/End: Original strand, 19 - 683
Target Start/End: Complemental strand, 223712 - 223057
Alignment:
Q  19 gaagtaacctttgaaactcatttcactttattattattatttgcacaagtgaacaaacaatgcaggctcgccggagaagctctgtccggccaccggcgcc 118  Q
    ||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  223712 gaagtaacctttgaaactcatttcactttattattatt---tgcacaagtgaacaaacaatgcaggctcgccggagaagctctgtccggccaccggcgcc 223616  T
Q  119 ggagaaagattctaaacattttatgaaagccatccttccctcacccattcatgacactcaaatagtatgtttatttttgtctctttctttt-gaattgtt 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || |||||    
T  223615 ggagaaagattctaaacattttatgaaagccatccttccctcacccattcatgacactcaaatagtatgtttatttttatctctttctttttgacttgtt 223516  T
Q  218 tttctgcctatatatgtttatgtctcaaatactagtgttttttctggcttgttttgtactattatgcattcatgcgtgtatgtcaatcaaatgttattat 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||        ||||||||||||||||||    
T  223515 tttctgcctatatatgtttatgtctcaaatactagtgttttttctggcttgttttgtactattatgcatgcatg--------tcaatcaaatgttattat 223424  T
Q  318 taattttataaaatgatatttaaatgttcatgtgctacaaagtctctttgtcattgtttttgttcttttgtgtctgtttgcatgtcgatcacttgttctg 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  223423 taattttataaaatgatatttaaatgttcatgtgctacaaagtctctttgtcattgtttttgttcttttgtgtctgtttgcatgtcgatcacttgttctg 223324  T
Q  418 ttaagtgtttctttcatactaaggttgtaaaaattgattttgaaacttttattgtgagtttagtttagtttatgtttggttcagttttggatgtggcaaa 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  223323 ttaagtgtttctttcatactaaggttgtaaaaattgattttgaaacttttattgtgagtttagtttagtttatgtttggtttagttttggatgtggcaaa 223224  T
Q  518 atttattcaagagagatgtgaaattgattttgacannnnnnnaatgataaatgttagtatgttaattgttgtgt---gttttttatttccttgtgaggac 614  Q
    ||||||||   ||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||    ||||||||||||||||||||||    
T  223223 atttattc--tagagatgtgaaattgattttgacatttttttaatgataaatgttagtatgttaattgttgtgttagtttttttatttccttgtgaggac 223126  T
Q  615 ttgaatcctagacttccgactacttaactcttagctcaaaccagttgagctatccaaccccctttgctt 683  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  223125 ttgaatcctaggcttccgactacttaactcttagctcaaaccagttgagctatccaaccccccttgctt 223057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 78 - 331
Target Start/End: Complemental strand, 218448 - 218198
Alignment:
Q  78 atgcaggctcgccggagaagctctgtccggccaccggcgccggagaaagattctaaacattttatgaaagccatccttccctcacccattcatgacactc 177  Q
    ||||||||||||||||||||||||||||||||||||| | ||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||     
T  218448 atgcaggctcgccggagaagctctgtccggccaccggtggcggagaaggattctaaacattttatgaaagccatccttccctcagccattcatgacacta 218349  T
Q  178 aaatagtatgtttatttttgtctctttcttttgaattgtttttctgcctatatatgtttatgtctcaaatactagtg-ttttttctggcttgttttgtac 276  Q
    || ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  218348 aattagtatgtttatttttgtctctttcttttgagttgtttttctgcctatatatgtttatgtctcaaatactagtgcttttttctggcttgttttgtac 218249  T
Q  277 tattatgcattcatgcgtgtatgtcaatcaaatgttattattaattttataaaat 331  Q
    |||||||||| |||||    |||||||||||||||||||||||||||||||||||    
T  218248 tattatgcatgcatgc----atgtcaatcaaatgttattattaattttataaaat 218198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 398 - 552
Target Start/End: Complemental strand, 218170 - 218020
Alignment:
Q  398 catgtcgatcacttgttctgttaagtgtttctttcatactaaggttgtaaaaattgattttgaaacttttattgtgagtttagtttagtttatgtttgg- 496  Q
    ||||| |||||||||||||||| | |||||||||||| ||||||||||||||||||||||| || ||||| ||   |  |||||||||| |||||||||     
T  218170 catgttgatcacttgttctgtttattgtttctttcattctaaggttgtaaaaattgatttttaatcttttctt---aagttagtttagtgtatgtttggt 218074  T
Q  497 ttcagttttggatgtggcaaaatttattcaagagagatgtgaaattgattttgaca 552  Q
    |||| ||||||||  ||||||||| |||     |||||||||||||||||||||||    
T  218073 ttcacttttggataaggcaaaattgatt--ttggagatgtgaaattgattttgaca 218020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 75 - 151
Target Start/End: Complemental strand, 199291 - 199215
Alignment:
Q  75 acaatgcaggctcgccggagaagctctgtccggccaccggcgccggagaaagattctaaacattttatgaaagccat 151  Q
    ||||||||| ||| ||||||||| | || |||| ||||||||||||||||||  || || |||||||||||||||||    
T  199291 acaatgcagcctcaccggagaagatgtggccggtcaccggcgccggagaaagcatcgaagcattttatgaaagccat 199215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 132 - 174
Target Start/End: Complemental strand, 225301 - 225259
Alignment:
Q  132 aaacattttatgaaagccatccttccctcacccattcatgaca 174  Q
    |||||||||| ||| ||||| ||||||||||||||||||||||    
T  225301 aaacattttaagaaggccatacttccctcacccattcatgaca 225259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 112 - 157
Target Start/End: Complemental strand, 212354 - 212309
Alignment:
Q  112 cggcgccggagaaagattctaaacattttatgaaagccatccttcc 157  Q
    ||||| ||||||||||||| || ||||||||||||||||| |||||    
T  212354 cggcggcggagaaagattcaaagcattttatgaaagccatacttcc 212309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 640 - 677
Target Start/End: Original strand, 22729954 - 22729991
Alignment:
Q  640 aactcttagctcaaaccagttgagctatccaaccccct 677  Q
    |||||||||||| |||||||||||||| ||||||||||    
T  22729954 aactcttagctcgaaccagttgagctacccaaccccct 22729991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 5e-21; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 76 - 211
Target Start/End: Complemental strand, 3809431 - 3809295
Alignment:
Q  76 caatgcaggctcgccggagaagctctgtccggccaccggcgccggagaaag-attctaaacattttatgaaagccatccttccctcacccattcatgaca 174  Q
    |||||||| ||||||||||||| ||||||| | ||  |||||||||||| | | || ||||||||| ||||||||||  |||||||||||||||||| ||    
T  3809431 caatgcagcctcgccggagaaggtctgtccagtcattggcgccggagaaggtaatcaaaacattttctgaaagccataattccctcacccattcatgcca 3809332  T
Q  175 ctcaaatagtatgtttatttttgtctctttcttttga 211  Q
    ||||| ||||| ||||   ||| ||||||||||||||    
T  3809331 ctcaattagtaagtttcggtttctctctttcttttga 3809295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 612 - 676
Target Start/End: Complemental strand, 11099008 - 11098944
Alignment:
Q  612 gacttgaatcctagacttccgactacttaactcttagctcaaaccagttgagctatccaaccccc 676  Q
    |||||| | ||| ||||||| ||| |||||| ||||||||||||| | ||||||| |||||||||    
T  11099008 gacttggaccctggacttccaactccttaacccttagctcaaacctgctgagctacccaaccccc 11098944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 624 - 672
Target Start/End: Complemental strand, 43965119 - 43965071
Alignment:
Q  624 agacttccgactacttaactcttagctcaaaccagttgagctatccaac 672  Q
    |||||||| ||| |||| |||||||||||||||| |||||||| |||||    
T  43965119 agacttccaacttcttatctcttagctcaaaccaattgagctacccaac 43965071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 115 - 170
Target Start/End: Complemental strand, 29839364 - 29839309
Alignment:
Q  115 cgccggagaaagattctaaacattttatgaaagccatccttccctcacccattcat 170  Q
    |||||||||| || || |||||||||||||||||||| ||||||||||||||||||    
T  29839364 cgccggagaaggaatcaaaacattttatgaaagccatacttccctcacccattcat 29839309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 396 - 477
Target Start/End: Complemental strand, 29839150 - 29839068
Alignment:
Q  396 tgcatgtcgatcacttgttct-gttaagtgtttctttcatactaaggttgtaaaaattgattttgaaacttttattgtgagtt 477  Q
    ||||||| ||||||| ||| | ||| ||||||||||| || | |||||||||||||||| ||||||| |||||||| ||||||    
T  29839150 tgcatgttgatcactcgtttttgtttagtgtttcttttatccaaaggttgtaaaaattgtttttgaatcttttattttgagtt 29839068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 560 - 676
Target Start/End: Original strand, 29728744 - 29728862
Alignment:
Q  560 aatgataaatgttagtatgttaattgttgtgt--gttttttatttccttgtgaggacttgaatcctagacttccgactacttaactcttagctcaaacca 657  Q
    ||||| || ||||||||||||||||||| |||  ||||||| | |||||   |||||||||| |||  |  ||| ||| |||||| ||||||||||||||    
T  29728744 aatgacaagtgttagtatgttaattgttatgttagttttttttctccttaataggacttgaaccctgaatctccaactccttaacccttagctcaaacca 29728843  T
Q  658 gttgagctatccaaccccc 676  Q
    ||||||||| |||||||||    
T  29728844 gttgagctacccaaccccc 29728862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 637 - 675
Target Start/End: Complemental strand, 38450733 - 38450695
Alignment:
Q  637 cttaactcttagctcaaaccagttgagctatccaacccc 675  Q
    |||||| ||||||||||||||||||||||| ||||||||    
T  38450733 cttaacccttagctcaaaccagttgagctacccaacccc 38450695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000004; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 566 - 676
Target Start/End: Original strand, 32002087 - 32002199
Alignment:
Q  566 aaatgttagtatgttaattgttgtgt--gttttttatttccttgtgaggacttgaatcctagacttccgactacttaactcttagctcaaaccagttgag 663  Q
    |||||||||||||||||||||| |||  ||| ||| | ||||||  ||||||| || ||| |||  || ||  |||||| ||||||||||||||||||||    
T  32002087 aaatgttagtatgttaattgttatgttagttctttttctccttgccaggacttaaacccttgaccgccaacaccttaacccttagctcaaaccagttgag 32002186  T
Q  664 ctatccaaccccc 676  Q
    ||| |||||||||    
T  32002187 ctaaccaaccccc 32002199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 638 - 676
Target Start/End: Original strand, 46976970 - 46977008
Alignment:
Q  638 ttaactcttagctcaaaccagttgagctatccaaccccc 676  Q
    ||||| ||||||||||||||||||||||| |||||||||    
T  46976970 ttaacccttagctcaaaccagttgagctacccaaccccc 46977008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 644 - 677
Target Start/End: Complemental strand, 41437157 - 41437124
Alignment:
Q  644 cttagctcaaaccagttgagctatccaaccccct 677  Q
    ||||||||||||||||||||||| ||||||||||    
T  41437157 cttagctcaaaccagttgagctacccaaccccct 41437124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 644 - 676
Target Start/End: Original strand, 33084987 - 33085019
Alignment:
Q  644 cttagctcaaaccagttgagctatccaaccccc 676  Q
    ||||||||||||||||||||||| |||||||||    
T  33084987 cttagctcaaaccagttgagctacccaaccccc 33085019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 560 - 674
Target Start/End: Original strand, 26413398 - 26413513
Alignment:
Q  560 aatgataaatgttagtatgttaattgttgtgt--gttttttatttccttgtgaggacttgaatcctagacttccgactacttaactcttagctcaaacca 657  Q
    ||||| |||||||||||||||||||||| |||  | ||||| | |||||   | |||||||||||| ||| ||| |||  | |||||||| |||||||||    
T  26413398 aatgacaaatgttagtatgttaattgttatgttagcttttt-tctcctttccaagacttgaatcctggacatccaactcatgaactcttacctcaaacca 26413496  T
Q  658 gttgagctatccaaccc 674  Q
    ||||||||| |||||||    
T  26413497 gttgagctacccaaccc 26413513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 640 - 677
Target Start/End: Complemental strand, 5589598 - 5589561
Alignment:
Q  640 aactcttagctcaaaccagttgagctatccaaccccct 677  Q
    |||||||||||| |||||||||||||| ||||||||||    
T  5589598 aactcttagctcgaaccagttgagctacccaaccccct 5589561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 634 - 675
Target Start/End: Original strand, 36665306 - 36665347
Alignment:
Q  634 ctacttaactcttagctcaaaccagttgagctatccaacccc 675  Q
    ||||||||| ||||||||||||||||| ||||| ||||||||    
T  36665306 ctacttaacccttagctcaaaccagttaagctacccaacccc 36665347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000004; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 566 - 674
Target Start/End: Original strand, 16452169 - 16452277
Alignment:
Q  566 aaatgttagtatgttaattgttgtgtgttttttatttccttgtgaggacttgaatcctagacttccgactacttaactcttagctcaaaccagttgagct 665  Q
    |||||||||||||||| |||||  ||   |||| | ||||||  |||||||||| || |||| ||| |||  | ||| ||||||||||||||||||||||    
T  16452169 aaatgttagtatgttatttgttacgttagttttttctccttgctaggacttgaacccaagacctccaacttttgaacccttagctcaaaccagttgagct 16452268  T
Q  666 atccaaccc 674  Q
    | |||||||    
T  16452269 acccaaccc 16452277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 644 - 676
Target Start/End: Original strand, 10429915 - 10429947
Alignment:
Q  644 cttagctcaaaccagttgagctatccaaccccc 676  Q
    ||||||||||||||||||||||| |||||||||    
T  10429915 cttagctcaaaccagttgagctacccaaccccc 10429947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 644 - 676
Target Start/End: Original strand, 26849278 - 26849310
Alignment:
Q  644 cttagctcaaaccagttgagctatccaaccccc 676  Q
    ||||||||||||||||||||||| |||||||||    
T  26849278 cttagctcaaaccagttgagctacccaaccccc 26849310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 644 - 676
Target Start/End: Complemental strand, 36959414 - 36959382
Alignment:
Q  644 cttagctcaaaccagttgagctatccaaccccc 676  Q
    ||||||||||||||||||||||| |||||||||    
T  36959414 cttagctcaaaccagttgagctacccaaccccc 36959382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University