View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11745_low_42 (Length: 489)
Name: NF11745_low_42
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11745_low_42 |
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Alignment Details
Target: chr7 (Bit Score: 430; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 20 - 486
Target Start/End: Original strand, 46787165 - 46787631
Alignment:
| Q |
20 |
agtttggataaaataatactagtacaaattgtagacaattttaannnnnnnaaactaaattagttaatcaattttcttattgagaataatttagttaagt |
119 |
Q |
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| T |
46787165 |
agtttggataaaataatactagtacaaattgtagacaattttaattttttttaactaaattagttaatcaattttcttattgagaataatttaattaagt |
46787264 |
T |
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| Q |
120 |
tgtgctcctacataatcccttcgtccttatcagtgtcgtacatgcatagtgtttcatctaagtacaaatccaacataacattgctggcagctagctactt |
219 |
Q |
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| T |
46787265 |
tgtgctcctacatactcccttcgtccttatcagtgtcgtacatgcatagtgtttcatctaagtacaaatccaacataacattgctggcagctagctactt |
46787364 |
T |
|
| Q |
220 |
actggacaaccatcaatgtggttctcaattctcattgaaaatgaatagtcagaataaatgtggtaactagtcctctttatcttgttccaagtaaaagaga |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46787365 |
actggacaaccatcaatgtggttctcaattctcattgaaaatgaatagtcagaataaatgtggtaactagtcctctttatcttgttccaagtaaaagaga |
46787464 |
T |
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| Q |
320 |
ataaactttttatcaggtacataaccttcatcttttaagtgtttcagcaaaccagacaaaacccagaatataacatcagcttccggatgcaatttgtccc |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46787465 |
ataaactttttatcaggtacataaccttcatcttttaagtgtttcagcaaaccagacaaaacccagaatataacatcagcttccggatgcaatttgtccc |
46787564 |
T |
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| Q |
420 |
ctaccacaaaactattgactttcttttctatctcaatccaacttatacctacttcctttgctactcc |
486 |
Q |
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| T |
46787565 |
ctaccacaaaactattgactttcttttctatctcaatccaacttatacctacttcttttgctactcc |
46787631 |
T |
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