View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11745_low_43 (Length: 487)
Name: NF11745_low_43
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11745_low_43 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 432; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 1 - 487
Target Start/End: Original strand, 32365518 - 32366004
Alignment:
| Q |
1 |
tcacaatcatagtccttaccaagtggactaagaatagtgtacaatccagctattgccggtgctgcaattgcaatggatatagtaattccaactccaatgg |
100 |
Q |
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| T |
32365518 |
tcacaatcatagtccttaccaagtggactaagaatagtgtacaatccagctattgccggtgctgcaattgcaatggatatagtaattccaactccaatgg |
32365617 |
T |
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| Q |
101 |
ctggtctctcagatcttttatatcctaaatttagactacaaagtgcatattgagcaaaacagttaacatgaaggagaataacaactaccatcatatgtgc |
200 |
Q |
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| T |
32365618 |
ctggtctctcagatcttttatatcctaaatttagactacaaagtgcatattgagcaaaacagttaacatgaaggagaataacaactaccatcatatgtgc |
32365717 |
T |
|
| Q |
201 |
ccattcatgaggcttataagtaccatttttgcagtaaatcatcctaagtgcagaaacatcatttggtgtccatctacacaaaagaacgagatggtggaac |
300 |
Q |
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| T |
32365718 |
ccattcatgaggcttataagtaccatttttgcagtaaatcatcctaagtgcagaaacatcatttggtgtccatctacacaaaagaacaagatggtggaac |
32365817 |
T |
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| Q |
301 |
ctctttggatgaagatacaaacacattagtgtaaagagagcatttagtatttggttatttatttaaaaccatgtattcctctcagacnnnnnnnnnagca |
400 |
Q |
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| T |
32365818 |
ctctttggatgaagatacaaacacattagtgtaaagagagcatttagtatttggttatttatttcaaaccatgtattcctctcagactttttttttagca |
32365917 |
T |
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| Q |
401 |
cattattcaacattcatgtcatgacaaagaacaaaatagctcccgatacagcgacacacactatcaacgcgaaaagggccatgttca |
487 |
Q |
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| T |
32365918 |
cattattcaacattcctgtcatgaccaagaacagaatcgctcccgatacagcgacacacactatccacgcgaaaagggccatgttca |
32366004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 487
Target Start/End: Original strand, 32377203 - 32377689
Alignment:
| Q |
1 |
tcacaatcatagtccttaccaagtggactaagaatagtgtacaatccagctattgccggtgctgcaattgcaatggatatagtaattccaactccaatgg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |||||||||| |||||| | |||||||| | |||||| |
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| T |
32377203 |
tcacaatcatagtccttaccaagtggactaagaataatgtacaatccagctgttgccggtgccgcaattgcaacggatatggcaattccaagttcaatgg |
32377302 |
T |
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| Q |
101 |
ctggtctctcagatcttttatatcctaaatttagactacaaagtgcatattgagcaaaacagttaacatgaaggagaataacaactaccatcatatgtgc |
200 |
Q |
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| T |
32377303 |
ctggtctctcagatcttttatatcctaaatttagactacaaactgcatattgagcaaaacagttaacatgaaggagaataacaactaccatcatatgtgc |
32377402 |
T |
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| Q |
201 |
ccattcatgaggcttataagtaccatttttgcagtaaatcatcctaagtgcagaaacatcatttggtgtccatctacacaaaagaacgagatggtggaac |
300 |
Q |
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| T |
32377403 |
ccattcacgaggcttagaagtaccatttttgcagaaaatcattctaagtgtagtaatatcatttgatctccatctacacaaaagaacaagatggtggaac |
32377502 |
T |
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| Q |
301 |
ctctttggatgaagatacaaacacattagtgtaaagagagcatttagtatttggttatttatttaaaaccatgtattcctctcagacnnnnnnnnnagca |
400 |
Q |
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| T |
32377503 |
ctctttggatgattatacaaagacattagtgtaaagagagcatttagtatttggttacttatttcaaaccatgtattcctctcagactttgtttttagca |
32377602 |
T |
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| Q |
401 |
cattattcaacattcatgtcatgacaaagaacaaaatagctcccgatacagcgacacacactatcaacgcgaaaagggccatgttca |
487 |
Q |
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| T |
32377603 |
cattattcaacattcctgtcatgaccaagaacagaatctcccccgatacagcgacacagattccccacgcgaaaagggccatgttca |
32377689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 68; Significance: 4e-30; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 85 - 236
Target Start/End: Original strand, 36122244 - 36122395
Alignment:
| Q |
85 |
attccaactccaatggctggtctctcagatcttttatatcctaaatttagactacaaagtgcatattgagcaaaacagttaacatgaaggagaataacaa |
184 |
Q |
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| T |
36122244 |
attccaacaccaatggccgggcgctcagatcttttataacctaagtttagaccgcaaagtgcatactgagcgaaacagttcacatgaccgagaattacca |
36122343 |
T |
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| Q |
185 |
ctaccatcatatgtgcccattcatgaggcttataagtaccatttttgcagta |
236 |
Q |
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| T |
36122344 |
ctaccattatgtgtttccattcatgaggcttataagttccattcttgcagta |
36122395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 316 - 380
Target Start/End: Original strand, 36122475 - 36122539
Alignment:
| Q |
316 |
tacaaacacattagtgtaaagagagcatttagtatttggttatttatttaaaaccatgtattcct |
380 |
Q |
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| T |
36122475 |
tacaaacacatcagtgtaaacagagcattgagtatttgattgtttacttcaaaccacgcattcct |
36122539 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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