View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11745_low_47 (Length: 468)

Name: NF11745_low_47
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11745_low_47
NF11745_low_47
[»] chr5 (2 HSPs)
chr5 (8-451)||(9198454-9198896)
chr5 (236-267)||(18873184-18873215)
[»] chr3 (17 HSPs)
chr3 (275-340)||(32034165-32034230)
chr3 (288-340)||(19984629-19984681)
chr3 (236-275)||(19984641-19984680)
chr3 (236-275)||(32034166-32034205)
chr3 (236-275)||(42637733-42637772)
chr3 (275-341)||(40926527-40926593)
chr3 (294-340)||(42637727-42637773)
chr3 (275-340)||(26926981-26927046)
chr3 (288-341)||(32516175-32516228)
chr3 (235-275)||(26927166-26927206)
chr3 (240-276)||(39268871-39268907)
chr3 (236-275)||(26926982-26927021)
chr3 (236-275)||(32516187-32516226)
chr3 (236-267)||(39269128-39269159)
chr3 (236-275)||(40926529-40926568)
chr3 (275-340)||(40926855-40926920)
chr3 (355-395)||(42637819-42637859)
[»] chr7 (10 HSPs)
chr7 (275-333)||(38948378-38948436)
chr7 (275-340)||(5266184-5266249)
chr7 (275-340)||(33834024-33834089)
chr7 (355-395)||(29646056-29646096)
chr7 (236-275)||(33834025-33834064)
chr7 (236-267)||(38948403-38948434)
chr7 (237-275)||(5266185-5266223)
chr7 (275-333)||(16564976-16565034)
chr7 (275-333)||(16600628-16600686)
chr7 (236-265)||(5266445-5266474)
[»] chr8 (5 HSPs)
chr8 (275-340)||(25186598-25186663)
chr8 (236-275)||(25186599-25186638)
chr8 (236-275)||(41456312-41456351)
chr8 (236-275)||(43901007-43901046)
chr8 (275-340)||(15968029-15968094)
[»] chr6 (4 HSPs)
chr6 (275-340)||(5592623-5592688)
chr6 (236-275)||(5592648-5592687)
chr6 (275-335)||(8929925-8929985)
chr6 (301-341)||(28985641-28985681)
[»] chr1 (9 HSPs)
chr1 (275-340)||(7171604-7171669)
chr1 (236-275)||(47086111-47086150)
chr1 (275-340)||(6238302-6238367)
chr1 (236-275)||(6237958-6237997)
chr1 (236-275)||(7171605-7171644)
chr1 (275-341)||(38871119-38871186)
chr1 (301-340)||(47086112-47086151)
chr1 (236-275)||(47377913-47377952)
chr1 (240-277)||(4112779-4112816)
[»] chr4 (7 HSPs)
chr4 (275-340)||(3640280-3640346)
chr4 (236-275)||(41743611-41743650)
chr4 (275-340)||(14115710-14115775)
chr4 (236-265)||(14945229-14945258)
chr4 (275-340)||(45684354-45684419)
chr4 (355-395)||(3640448-3640488)
chr4 (236-272)||(53684018-53684054)
[»] chr2 (3 HSPs)
chr2 (236-267)||(4722106-4722137)
chr2 (236-275)||(10485269-10485308)
chr2 (239-275)||(18607246-18607282)


Alignment Details
Target: chr5 (Bit Score: 348; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 8 - 451
Target Start/End: Original strand, 9198454 - 9198896
Alignment:
Q  8 atgaaccttcatgttctttcatattagtccctaaggacacatcaacaattttttaaagagttaatgtccaaatttaacttcaaggataaaaataactaac 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||    
T  9198454 atgaaccttcatgttctttcatattagtccctaaggacacatcaacaatttttgaaagagttaatgtccaaatttaacttcaaggatgaaaataactaac 9198553  T
Q  108 aaaatgtagatcggtagattatactttgcgtttttgtttgcgtcagagataaagttgataacgagttacactttcaagttcaaaatgatagtttgtctct 207  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||    
T  9198554 aaaatgtagattggtagattatactttgcgtttttgtttgcgtcagagataaagttgataacgagttacacttttaagtttaaaatgatggtttgtctct 9198653  T
Q  208 attttttgtccactcttaccctttttcgtaatgaaattggaggtctaactcatccttaaataccggtttgaattcgataagctcttataccacaatgaaa 307  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||||||| ||| |||    
T  9198654 attatttgtccactcttaccctttttcgtaatgaaattggaggtctaactcatccttaaataccggtttgaattcaacaggctcttataccataataaaa 9198753  T
Q  308 tttgaggtctaacacatccttaaaaaccggttctaaatcggaagaaaagtcttatctatccaatatgggagatgaatttttcccaatatttcgtataatc 407  Q
    ||||||||||||| ||||||||||||||| |||||||||||||||| |||||||||||||| || || || ||||||||||||||||||||| || |||     
T  9198754 tttgaggtctaacgcatccttaaaaaccgattctaaatcggaagaagagtcttatctatccgatgtgagacatgaatttttcccaatatttcttacaat- 9198852  T
Q  408 ccataaacaatcttaaaatcaaagaatacaattgaagttgtctt 451  Q
    ||||||||||||||||||| ||||||||||||||||||||||||    
T  9198853 ccataaacaatcttaaaatgaaagaatacaattgaagttgtctt 9198896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 236 - 267
Target Start/End: Original strand, 18873184 - 18873215
Alignment:
Q  236 taatgaaattggaggtctaactcatccttaaa 267  Q
    ||||||||||||||||||||||||||||||||    
T  18873184 taatgaaattggaggtctaactcatccttaaa 18873215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 275 - 340
Target Start/End: Complemental strand, 32034230 - 32034165
Alignment:
Q  275 ttgaattcgataagctcttataccacaatgaaatttgaggtctaacacatccttaaaaaccggttc 340  Q
    ||||| |||| ||||||| |||||| ||||||||| |||||||||| |||||||||||||||||||    
T  32034230 ttgaaatcgacaagctctgataccataatgaaattggaggtctaactcatccttaaaaaccggttc 32034165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 288 - 340
Target Start/End: Original strand, 19984629 - 19984681
Alignment:
Q  288 gctcttataccacaatgaaatttgaggtctaacacatccttaaaaaccggttc 340  Q
    ||||| |||||| ||||||||| |||||||||| |||||||||||||||||||    
T  19984629 gctctgataccataatgaaattggaggtctaactcatccttaaaaaccggttc 19984681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 236 - 275
Target Start/End: Original strand, 19984641 - 19984680
Alignment:
Q  236 taatgaaattggaggtctaactcatccttaaataccggtt 275  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  19984641 taatgaaattggaggtctaactcatccttaaaaaccggtt 19984680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 236 - 275
Target Start/End: Complemental strand, 32034205 - 32034166
Alignment:
Q  236 taatgaaattggaggtctaactcatccttaaataccggtt 275  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  32034205 taatgaaattggaggtctaactcatccttaaaaaccggtt 32034166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 236 - 275
Target Start/End: Original strand, 42637733 - 42637772
Alignment:
Q  236 taatgaaattggaggtctaactcatccttaaataccggtt 275  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  42637733 taatgaaattggaggtctaactcatccttaaaaaccggtt 42637772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 275 - 341
Target Start/End: Complemental strand, 40926593 - 40926527
Alignment:
Q  275 ttgaattcgataagctcttataccacaatgaaatttgaggtctaacacatccttaaaaaccggttct 341  Q
    ||||| |||| | ||||| |||||| ||||||||| |||| ||||| ||||||||||||||||||||    
T  40926593 ttgaaatcgacaggctctaataccataatgaaattggaggcctaactcatccttaaaaaccggttct 40926527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 294 - 340
Target Start/End: Original strand, 42637727 - 42637773
Alignment:
Q  294 ataccacaatgaaatttgaggtctaacacatccttaaaaaccggttc 340  Q
    |||||| ||||||||| |||||||||| |||||||||||||||||||    
T  42637727 ataccataatgaaattggaggtctaactcatccttaaaaaccggttc 42637773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 275 - 340
Target Start/End: Complemental strand, 26927046 - 26926981
Alignment:
Q  275 ttgaattcgataagctcttataccacaatgaaatttgaggtctaacacatccttaaaaaccggttc 340  Q
    |||||| ||| | ||||| |||||| ||||||||| |||| ||||| |||||||||||||||||||    
T  26927046 ttgaatccgacaggctctgataccataatgaaattggaggcctaactcatccttaaaaaccggttc 26926981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 288 - 341
Target Start/End: Original strand, 32516175 - 32516228
Alignment:
Q  288 gctcttataccacaatgaaatttgaggtctaacacatccttaaaaaccggttct 341  Q
    ||||| |||||| ||||||||| |||| ||||| ||||||||||||||||||||    
T  32516175 gctctgataccataatgaaattggaggcctaactcatccttaaaaaccggttct 32516228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 235 - 275
Target Start/End: Complemental strand, 26927206 - 26927166
Alignment:
Q  235 gtaatgaaattggaggtctaactcatccttaaataccggtt 275  Q
    |||||||||||||||| |||||||||||||||| |||||||    
T  26927206 gtaatgaaattggaggcctaactcatccttaaaaaccggtt 26927166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 240 - 276
Target Start/End: Original strand, 39268871 - 39268907
Alignment:
Q  240 gaaattggaggtctaactcatccttaaataccggttt 276  Q
    |||||||||||||||||||||||||||| ||||||||    
T  39268871 gaaattggaggtctaactcatccttaaaaaccggttt 39268907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 236 - 275
Target Start/End: Complemental strand, 26927021 - 26926982
Alignment:
Q  236 taatgaaattggaggtctaactcatccttaaataccggtt 275  Q
    ||||||||||||||| |||||||||||||||| |||||||    
T  26927021 taatgaaattggaggcctaactcatccttaaaaaccggtt 26926982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 236 - 275
Target Start/End: Original strand, 32516187 - 32516226
Alignment:
Q  236 taatgaaattggaggtctaactcatccttaaataccggtt 275  Q
    ||||||||||||||| |||||||||||||||| |||||||    
T  32516187 taatgaaattggaggcctaactcatccttaaaaaccggtt 32516226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 236 - 267
Target Start/End: Complemental strand, 39269159 - 39269128
Alignment:
Q  236 taatgaaattggaggtctaactcatccttaaa 267  Q
    ||||||||||||||||||||||||||||||||    
T  39269159 taatgaaattggaggtctaactcatccttaaa 39269128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 236 - 275
Target Start/End: Complemental strand, 40926568 - 40926529
Alignment:
Q  236 taatgaaattggaggtctaactcatccttaaataccggtt 275  Q
    ||||||||||||||| |||||||||||||||| |||||||    
T  40926568 taatgaaattggaggcctaactcatccttaaaaaccggtt 40926529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 340
Target Start/End: Complemental strand, 40926920 - 40926855
Alignment:
Q  275 ttgaattcgataagctcttataccacaatgaaatttgaggtctaacacatccttaaaaaccggttc 340  Q
    ||||| |||| | ||||| |||||| |||||||||  ||| ||||| |||||||||||||||||||    
T  40926920 ttgaaatcgacaggctctgataccataatgaaattgaaggactaactcatccttaaaaaccggttc 40926855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 355 - 395
Target Start/End: Original strand, 42637819 - 42637859
Alignment:
Q  355 agtcttatctatccaatatgggagatgaatttttcccaata 395  Q
    ||||||||||||||||| ||||| |||| ||||||||||||    
T  42637819 agtcttatctatccaatgtgggatatgagtttttcccaata 42637859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 275 - 333
Target Start/End: Original strand, 38948378 - 38948436
Alignment:
Q  275 ttgaattcgataagctcttataccacaatgaaatttgaggtctaacacatccttaaaaa 333  Q
    |||||||||| ||||||| |||||| ||||||||| |||||||||| ||||||||||||    
T  38948378 ttgaattcgacaagctctgataccataatgaaattggaggtctaactcatccttaaaaa 38948436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 275 - 340
Target Start/End: Complemental strand, 5266249 - 5266184
Alignment:
Q  275 ttgaattcgataagctcttataccacaatgaaatttgaggtctaacacatccttaaaaaccggttc 340  Q
    |||||||||| | ||||| |||||| ||||||||| |||| ||||| |||||||||||||||||||    
T  5266249 ttgaattcgacaggctctgataccagaatgaaattggaggcctaactcatccttaaaaaccggttc 5266184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 275 - 340
Target Start/End: Complemental strand, 33834089 - 33834024
Alignment:
Q  275 ttgaattcgataagctcttataccacaatgaaatttgaggtctaacacatccttaaaaaccggttc 340  Q
    ||||| |||| | ||||| |||||| ||||||||| |||| ||||| |||||||||||||||||||    
T  33834089 ttgaaatcgacaggctctgataccataatgaaattggaggcctaactcatccttaaaaaccggttc 33834024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 355 - 395
Target Start/End: Complemental strand, 29646096 - 29646056
Alignment:
Q  355 agtcttatctatccaatatgggagatgaatttttcccaata 395  Q
    ||||||||||||||||| ||||| |||||||||||||||||    
T  29646096 agtcttatctatccaatgtgggacatgaatttttcccaata 29646056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 236 - 275
Target Start/End: Complemental strand, 33834064 - 33834025
Alignment:
Q  236 taatgaaattggaggtctaactcatccttaaataccggtt 275  Q
    ||||||||||||||| |||||||||||||||| |||||||    
T  33834064 taatgaaattggaggcctaactcatccttaaaaaccggtt 33834025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 236 - 267
Target Start/End: Original strand, 38948403 - 38948434
Alignment:
Q  236 taatgaaattggaggtctaactcatccttaaa 267  Q
    ||||||||||||||||||||||||||||||||    
T  38948403 taatgaaattggaggtctaactcatccttaaa 38948434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 237 - 275
Target Start/End: Complemental strand, 5266223 - 5266185
Alignment:
Q  237 aatgaaattggaggtctaactcatccttaaataccggtt 275  Q
    |||||||||||||| |||||||||||||||| |||||||    
T  5266223 aatgaaattggaggcctaactcatccttaaaaaccggtt 5266185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 275 - 333
Target Start/End: Complemental strand, 16565034 - 16564976
Alignment:
Q  275 ttgaattcgataagctcttataccacaatgaaatttgaggtctaacacatccttaaaaa 333  Q
    |||||||||||||||||| ||||||   |||||||| ||| ||||| ||||||||||||    
T  16565034 ttgaattcgataagctctgataccatgttgaaatttaaggcctaactcatccttaaaaa 16564976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 275 - 333
Target Start/End: Original strand, 16600628 - 16600686
Alignment:
Q  275 ttgaattcgataagctcttataccacaatgaaatttgaggtctaacacatccttaaaaa 333  Q
    |||||||||||||||||| ||||||   |||||||| ||| ||||| ||||||||||||    
T  16600628 ttgaattcgataagctctgataccatgttgaaatttaaggcctaactcatccttaaaaa 16600686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 236 - 265
Target Start/End: Complemental strand, 5266474 - 5266445
Alignment:
Q  236 taatgaaattggaggtctaactcatcctta 265  Q
    ||||||||||||||||||||||||||||||    
T  5266474 taatgaaattggaggtctaactcatcctta 5266445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 275 - 340
Target Start/End: Complemental strand, 25186663 - 25186598
Alignment:
Q  275 ttgaattcgataagctcttataccacaatgaaatttgaggtctaacacatccttaaaaaccggttc 340  Q
    |||||||||| | ||||| |||||| ||||||||| |||| ||||| |||||||||||||||||||    
T  25186663 ttgaattcgacaggctctgataccataatgaaattggaggcctaactcatccttaaaaaccggttc 25186598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 236 - 275
Target Start/End: Complemental strand, 25186638 - 25186599
Alignment:
Q  236 taatgaaattggaggtctaactcatccttaaataccggtt 275  Q
    ||||||||||||||| |||||||||||||||| |||||||    
T  25186638 taatgaaattggaggcctaactcatccttaaaaaccggtt 25186599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 236 - 275
Target Start/End: Original strand, 41456312 - 41456351
Alignment:
Q  236 taatgaaattggaggtctaactcatccttaaataccggtt 275  Q
    ||||||||||||||| |||||||||||||||| |||||||    
T  41456312 taatgaaattggaggcctaactcatccttaaaaaccggtt 41456351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 236 - 275
Target Start/End: Original strand, 43901007 - 43901046
Alignment:
Q  236 taatgaaattggaggtctaactcatccttaaataccggtt 275  Q
    ||||||||||||||| |||||||||||||||| |||||||    
T  43901007 taatgaaattggaggcctaactcatccttaaaaaccggtt 43901046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 340
Target Start/End: Original strand, 15968029 - 15968094
Alignment:
Q  275 ttgaattcgataagctcttataccacaatgaaatttgaggtctaacacatccttaaaaaccggttc 340  Q
    ||||| |||| | ||||| |||||| ||||||||| | || ||||| |||||||||||||||||||    
T  15968029 ttgaaatcgacaggctctgataccataatgaaattggcggcctaactcatccttaaaaaccggttc 15968094  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 275 - 340
Target Start/End: Original strand, 5592623 - 5592688
Alignment:
Q  275 ttgaattcgataagctcttataccacaatgaaatttgaggtctaacacatccttaaaaaccggttc 340  Q
    |||||||||| |  |||| |||||| ||||||||| |||||||||| |||||||||||||||||||    
T  5592623 ttgaattcgacagactctgataccataatgaaattggaggtctaactcatccttaaaaaccggttc 5592688  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 236 - 275
Target Start/End: Original strand, 5592648 - 5592687
Alignment:
Q  236 taatgaaattggaggtctaactcatccttaaataccggtt 275  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  5592648 taatgaaattggaggtctaactcatccttaaaaaccggtt 5592687  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 275 - 335
Target Start/End: Complemental strand, 8929985 - 8929925
Alignment:
Q  275 ttgaattcgataagctcttataccacaatgaaatttgaggtctaacacatccttaaaaacc 335  Q
    |||||||||| ||||||| ||||||   |||||||||||||||||  |||||||| |||||    
T  8929985 ttgaattcgacaagctctgataccatgttgaaatttgaggtctaattcatccttacaaacc 8929925  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 301 - 341
Target Start/End: Original strand, 28985641 - 28985681
Alignment:
Q  301 aatgaaatttgaggtctaacacatccttaaaaaccggttct 341  Q
    ||||||||| | |||||||| ||||||||||||||||||||    
T  28985641 aatgaaattgggggtctaacccatccttaaaaaccggttct 28985681  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 275 - 340
Target Start/End: Complemental strand, 7171669 - 7171604
Alignment:
Q  275 ttgaattcgataagctcttataccacaatgaaatttgaggtctaacacatccttaaaaaccggttc 340  Q
    |||||||||| | ||||| |||||| ||||||||| |||| ||||| |||||||||||||||||||    
T  7171669 ttgaattcgacaggctctgataccataatgaaattggaggcctaactcatccttaaaaaccggttc 7171604  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 236 - 275
Target Start/End: Original strand, 47086111 - 47086150
Alignment:
Q  236 taatgaaattggaggtctaactcatccttaaataccggtt 275  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  47086111 taatgaaattggaggtctaactcatccttaaaaaccggtt 47086150  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 275 - 340
Target Start/End: Original strand, 6238302 - 6238367
Alignment:
Q  275 ttgaattcgataagctcttataccacaatgaaatttgaggtctaacacatccttaaaaaccggttc 340  Q
    |||||||||| | ||||| |||||| ||||||||| ||||  |||| |||||||||||||||||||    
T  6238302 ttgaattcgacaggctctgataccataatgaaattggaggcataactcatccttaaaaaccggttc 6238367  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 236 - 275
Target Start/End: Original strand, 6237958 - 6237997
Alignment:
Q  236 taatgaaattggaggtctaactcatccttaaataccggtt 275  Q
    ||||||||||||||| |||||||||||||||| |||||||    
T  6237958 taatgaaattggaggcctaactcatccttaaaaaccggtt 6237997  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 236 - 275
Target Start/End: Complemental strand, 7171644 - 7171605
Alignment:
Q  236 taatgaaattggaggtctaactcatccttaaataccggtt 275  Q
    ||||||||||||||| |||||||||||||||| |||||||    
T  7171644 taatgaaattggaggcctaactcatccttaaaaaccggtt 7171605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 275 - 341
Target Start/End: Original strand, 38871119 - 38871186
Alignment:
Q  275 ttgaattcgataagctcttataccacaatgaaatttgaggtctaacacatcctta-aaaaccggttct 341  Q
    |||||||||| ||||||| ||||||   |||||||||||| ||||| |||||||| ||||||||||||    
T  38871119 ttgaattcgacaagctctgataccatgttgaaatttgaggcctaacgcatccttacaaaaccggttct 38871186  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 301 - 340
Target Start/End: Original strand, 47086112 - 47086151
Alignment:
Q  301 aatgaaatttgaggtctaacacatccttaaaaaccggttc 340  Q
    ||||||||| |||||||||| |||||||||||||||||||    
T  47086112 aatgaaattggaggtctaactcatccttaaaaaccggttc 47086151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 236 - 275
Target Start/End: Complemental strand, 47377952 - 47377913
Alignment:
Q  236 taatgaaattggaggtctaactcatccttaaataccggtt 275  Q
    |||||||||||||||||||| ||||||||||| |||||||    
T  47377952 taatgaaattggaggtctaattcatccttaaaaaccggtt 47377913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 277
Target Start/End: Original strand, 4112779 - 4112816
Alignment:
Q  240 gaaattggaggtctaactcatccttaaataccggtttg 277  Q
    ||||||||||| |||||||||||||||| |||||||||    
T  4112779 gaaattggaggcctaactcatccttaaaaaccggtttg 4112816  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 275 - 340
Target Start/End: Complemental strand, 3640346 - 3640280
Alignment:
Q  275 ttgaattcgataag-ctcttataccacaatgaaatttgaggtctaacacatccttaaaaaccggttc 340  Q
    |||||||||| ||| |||| |||||| ||||||||| |||| ||||| |||||||||||||||||||    
T  3640346 ttgaattcgacaaggctctgataccataatgaaattagaggcctaactcatccttaaaaaccggttc 3640280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 236 - 275
Target Start/End: Complemental strand, 41743650 - 41743611
Alignment:
Q  236 taatgaaattggaggtctaactcatccttaaataccggtt 275  Q
    ||||||||||||||| |||||||||||||||| |||||||    
T  41743650 taatgaaattggaggcctaactcatccttaaaaaccggtt 41743611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 340
Target Start/End: Original strand, 14115710 - 14115775
Alignment:
Q  275 ttgaattcgataagctcttataccacaatgaaatttgaggtctaacacatccttaaaaaccggttc 340  Q
    ||||| |||| | ||||| |||||| ||||||||| |||| | ||| |||||||||||||||||||    
T  14115710 ttgaaatcgacaggctctgataccataatgaaattggaggcccaactcatccttaaaaaccggttc 14115775  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 236 - 265
Target Start/End: Complemental strand, 14945258 - 14945229
Alignment:
Q  236 taatgaaattggaggtctaactcatcctta 265  Q
    ||||||||||||||||||||||||||||||    
T  14945258 taatgaaattggaggtctaactcatcctta 14945229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 340
Target Start/End: Original strand, 45684354 - 45684419
Alignment:
Q  275 ttgaattcgataagctcttataccacaatgaaatttgaggtctaacacatccttaaaaaccggttc 340  Q
    ||||| |||| | ||||| |||||| ||||||||| |||| ||||| ||||||||||||| |||||    
T  45684354 ttgaaatcgacacgctctgataccataatgaaattggaggcctaactcatccttaaaaactggttc 45684419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 355 - 395
Target Start/End: Complemental strand, 3640488 - 3640448
Alignment:
Q  355 agtcttatctatccaatatgggagatgaatttttcccaata 395  Q
    |||||||||||||| || |||||||||| ||||||||||||    
T  3640488 agtcttatctatccgatgtgggagatgagtttttcccaata 3640448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 236 - 272
Target Start/End: Original strand, 53684018 - 53684054
Alignment:
Q  236 taatgaaattggaggtctaactcatccttaaataccg 272  Q
    ||||||||||||||| |||||||||||||||| ||||    
T  53684018 taatgaaattggaggcctaactcatccttaaaaaccg 53684054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 236 - 267
Target Start/End: Complemental strand, 4722137 - 4722106
Alignment:
Q  236 taatgaaattggaggtctaactcatccttaaa 267  Q
    ||||||||||||||||||||||||||||||||    
T  4722137 taatgaaattggaggtctaactcatccttaaa 4722106  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 236 - 275
Target Start/End: Complemental strand, 10485308 - 10485269
Alignment:
Q  236 taatgaaattggaggtctaactcatccttaaataccggtt 275  Q
    ||||||||||||||| |||||||||||||||| |||||||    
T  10485308 taatgaaattggaggcctaactcatccttaaaaaccggtt 10485269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 239 - 275
Target Start/End: Original strand, 18607246 - 18607282
Alignment:
Q  239 tgaaattggaggtctaactcatccttaaataccggtt 275  Q
    |||||||||||| |||||||||||||||| |||||||    
T  18607246 tgaaattggaggcctaactcatccttaaaaaccggtt 18607282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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