View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11745_low_50 (Length: 445)
Name: NF11745_low_50
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11745_low_50 |
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Alignment Details
Target: chr5 (Bit Score: 164; Significance: 2e-87; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 19 - 210
Target Start/End: Original strand, 1080477 - 1080668
Alignment:
| Q |
19 |
tgatccacaataattttacaaaaactataaagatgagcttttgaaaaatcacaatagattattgtgatgcaaacacatctattgtgatattaaacatagt |
118 |
Q |
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| T |
1080477 |
tgatccacaataattttacaaaaactacaaagatgagcttttgaaaaatcacaatagatcattgtgatgcaaacacatctattgtgataccaaatatagt |
1080576 |
T |
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| Q |
119 |
catagttagaatcatggtaaccgcaagattgtgttgtcactttgattttggtaaactctgcatgattcaaaacatgaaattgaagtaaaatg |
210 |
Q |
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| T |
1080577 |
catacttagaatcatggtaactgcaagattgtgttgtcactttgattttggtaaactctgcatgattcaaaacatgaaattgaagtaaaatg |
1080668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 282 - 427
Target Start/End: Original strand, 1080740 - 1080885
Alignment:
| Q |
282 |
agagtgaagactcactttaatttcttacgatttttgaggggcccaatttggtccttaatgaaaaaataacatcaaattaatctaatgcgaagctccctcc |
381 |
Q |
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| T |
1080740 |
agagtgaagactcactttagttccttacgatttttgagggacccaatttggtccttaatgaaaaaataacatcaaattaatctaatgtgaagctccctcc |
1080839 |
T |
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| Q |
382 |
acccctgctcttgcatttagcttaagaattctgctcttcattcagt |
427 |
Q |
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| T |
1080840 |
acccctgctcttgcatttagcttaagaattctgctcttcactcagt |
1080885 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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