View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11745_low_52 (Length: 443)
Name: NF11745_low_52
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11745_low_52 |
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Alignment Details
Target: chr7 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 18 - 435
Target Start/End: Complemental strand, 12359635 - 12359228
Alignment:
| Q |
18 |
cattgtgctgtccaacaatccaaatagttnnnnnnnttaggcggagtaatgaaagtaaatctcaaccaatgcatcaccttcacccaaacctttgacacta |
117 |
Q |
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| T |
12359635 |
cattgtgctgtccaacaatccaaatagttaaaaaaattaggcggagtaatgaaagtaaatctcaaccaatgaatcaccttcacccaaacctttgacacta |
12359536 |
T |
|
| Q |
118 |
cctcacaatctaaaaagagacgagttgtgtttccaaaccttctccacacaatacacacgacgccccctcatccacccccaaagaattttggaatgcaaga |
217 |
Q |
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| T |
12359535 |
cctcacaatctaaaaagagacgagttgtgtttccaaaccttctccacacaatacacacgacgccccctcatccacccccaaagcatttcggactgcaaga |
12359436 |
T |
|
| Q |
218 |
tacttacgagttggcatccaatttagaaccaatgtccaataaaaagtgaccaattttgacggagttgggctcttccataaatatttaaccaaaaaccttt |
317 |
Q |
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|||||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
12359435 |
tacttacgagttggcatccagtttagaagcaatg----------agtgaccaattttgacggagttgggctcttccatgaatatttaaccaaaaaccttt |
12359346 |
T |
|
| Q |
318 |
tcctccaaagtacttaaaatatcctaaagtggtcaaatttttctagcatttgatgtgtcgtcctcaccaaaaaatcagctctgtccgccgtccgccaccc |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12359345 |
tcctccaaagtacttaaaatatcctaaagtggtcaaatttttctagcatttgatgtgtcgtcctcaccaaaaaatcagctctgtccgccgtccgccaccc |
12359246 |
T |
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| Q |
418 |
ccatgaatccttcttctc |
435 |
Q |
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||||||||||| |||||| |
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| T |
12359245 |
ccatgaatcctccttctc |
12359228 |
T |
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