View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11745_low_55 (Length: 435)
Name: NF11745_low_55
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11745_low_55 |
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Alignment Details
Target: chr3 (Bit Score: 255; Significance: 1e-142; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 140 - 421
Target Start/End: Complemental strand, 6070128 - 6069847
Alignment:
| Q |
140 |
aggattaatattatatttttgtgttgagcatatggttcttaggggaaggagccttaataatatgtagttaggttgaaaggtaagtaacatatcttagtaa |
239 |
Q |
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| T |
6070128 |
aggattaatattatatttttgtgttaagcatatggttcttaggggaaggagtcttaataatatgtagttaggttgaaaggtaagtaacatattttagtaa |
6070029 |
T |
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| Q |
240 |
tttagagttttggtcag-aggatagattagtaaattctagcccataattttatccgggaatcaaatttgggttctaccacacgatttatcatttgatgaa |
338 |
Q |
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| T |
6070028 |
tttagagttt-ggtcaggaggatagattagtaaattctagcccataattttatccgggaatcaaatttgggttctaccacacgatttatcatttgatgaa |
6069930 |
T |
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| Q |
339 |
attcattaattacttaagaacaatcaatttgttgaaataatttaaataattaattataatgtttggatggtatatgttttctt |
421 |
Q |
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| T |
6069929 |
attcattaattacttaagaacaatcaatttgttgaaataatttaaataattaattataatgtttggatggtatatgttttctt |
6069847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 7 - 44
Target Start/End: Complemental strand, 6070261 - 6070224
Alignment:
| Q |
7 |
taagcttatgatttgtgttatgcatattaatatttatc |
44 |
Q |
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| T |
6070261 |
taagcttatgatttgtgttatgcatattaatatttatc |
6070224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 302 - 421
Target Start/End: Complemental strand, 6067187 - 6067068
Alignment:
| Q |
302 |
aatttgggttctaccacacgatttatcatttgatgaaattcattaattacttaagaacaatcaatttgttgaaataatttaaataattaattataatgtt |
401 |
Q |
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| T |
6067187 |
aatttgggttttaccaaacgattcgtcttttaatgaaatttattaatcatttgagaccaatcacttcattgaaataatttgaataactaattataatttt |
6067088 |
T |
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| Q |
402 |
tggatggtatatgttttctt |
421 |
Q |
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| T |
6067087 |
cggttggtatacattttctt |
6067068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 172 - 226
Target Start/End: Complemental strand, 6067315 - 6067261
Alignment:
| Q |
172 |
tggttcttaggggaaggagccttaataatatgtagttaggttgaaaggtaagtaa |
226 |
Q |
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| T |
6067315 |
tggttcctaggggaaggagccttcataatatggagtttggatgaaaggtaagtaa |
6067261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 7 - 41
Target Start/End: Original strand, 6056132 - 6056166
Alignment:
| Q |
7 |
taagcttatgatttgtgttatgcatattaatattt |
41 |
Q |
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| T |
6056132 |
taagcttatgatttgtgttatgcatattattattt |
6056166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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