View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11745_low_56 (Length: 433)

Name: NF11745_low_56
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11745_low_56
NF11745_low_56
[»] chr1 (6 HSPs)
chr1 (19-419)||(2921967-2922367)
chr1 (193-285)||(13899885-13899976)
chr1 (201-257)||(25685740-25685796)
chr1 (209-310)||(2717916-2718016)
chr1 (242-292)||(44118428-44118478)
chr1 (193-257)||(10514928-10514992)
[»] chr4 (2 HSPs)
chr4 (204-308)||(44019615-44019717)
chr4 (193-283)||(54137090-54137180)
[»] chr8 (2 HSPs)
chr8 (204-257)||(30525228-30525281)
chr8 (215-308)||(43541309-43541402)
[»] chr6 (1 HSPs)
chr6 (193-257)||(27134162-27134226)
[»] chr7 (3 HSPs)
chr7 (205-252)||(36496135-36496182)
chr7 (200-259)||(36496243-36496302)
chr7 (214-300)||(3219740-3219826)
[»] scaffold0115 (1 HSPs)
scaffold0115 (209-258)||(46135-46184)


Alignment Details
Target: chr1 (Bit Score: 393; Significance: 0; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 19 - 419
Target Start/End: Original strand, 2921967 - 2922367
Alignment:
Q  19 gtgctcagatctaaggacgagttcgtgtctaaagaatgacccaataaaaatttagggttaagttagggacgagtataaccaatcccaacttgcccctttg 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2921967 gtgctcagatctaaggacgagttcgtgtctaaagaatgacccaataaaaatttagggttaagttagggacgagtataaccaatcccaacttgcccctttg 2922066  T
Q  119 tcaccccaactataaacaactgatggcttttcgtaagttacaaatcaaattctttaatgagtttgaatcggatgaatgagtttgaatcttatccgaaaag 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2922067 tcaccccaactataaacaactgatggcttttcgtaagttacaaatcaaattctttaatgagtttgaatcggatgaatgagtttgaatcttatccgaaaag 2922166  T
Q  219 ctagctcaaaggatgagagtacccaaacacatttatacatctgacaacccagaaacctgagcaatgtcgaactcgaatacaatttcaataaaattcttat 318  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  2922167 ctagctcaaaggatgagagtatccaaacacatttatacatctgacaacccagaaacctgagcaatgtcgaactccaatacaatttcaataaaattcttat 2922266  T
Q  319 cagagttgataagtaccacaaatcaaaaattaatccaaactgagtatagtattaatcaccatctttattcaattttcatttcctcaaatttcattcttca 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2922267 cagagttgataagtaccacaaatcaaaaattaatccaaactgagtatagtattaatcaccatctttattcaattttcatttcctcaaatttcattcttca 2922366  T
Q  419 t 419  Q
    |    
T  2922367 t 2922367  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 193 - 285
Target Start/End: Complemental strand, 13899976 - 13899885
Alignment:
Q  193 aatgagtttgaatcttatccgaaaagctagctcaaaggatgagagtacccaaacacatttatacatctgacaacccagaaacctgagcaatgt 285  Q
    |||||| ||||||||||||| ||||| ||||||||| ||| ||||| || ||| |||||||||||||  |||||||| |||||||||||||||    
T  13899976 aatgagattgaatcttatcctaaaagatagctcaaatgataagagtgccaaaa-acatttatacatccaacaacccaaaaacctgagcaatgt 13899885  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 201 - 257
Target Start/End: Complemental strand, 25685796 - 25685740
Alignment:
Q  201 tgaatcttatccgaaaagctagctcaaaggatgagagtacccaaacacatttataca 257  Q
    |||||||||||| ||||||||||||||| ||||||||||  |||||| |||||||||    
T  25685796 tgaatcttatcctaaaagctagctcaaatgatgagagtattcaaacatatttataca 25685740  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 209 - 310
Target Start/End: Original strand, 2717916 - 2718016
Alignment:
Q  209 atccgaaaagctagctcaaaggatgagagtacccaaacacatttatacatctgacaacccagaaacctgagcaatgtcgaactcgaatacaatttcaata 308  Q
    |||| |||||||||||||||||| ||| ||   ||| ||||||||||||||  |||| || | |||| ||||||||| | |||||||||||| |||||||    
T  2717916 atcctaaaagctagctcaaaggacgagggtggtcaagcacatttatacatccaacaa-cctggaacccgagcaatgttggactcgaatacaaattcaata 2718014  T
Q  309 aa 310  Q
    ||    
T  2718015 aa 2718016  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 242 - 292
Target Start/End: Original strand, 44118428 - 44118478
Alignment:
Q  242 caaacacatttatacatctgacaacccagaaacctgagcaatgtcgaactc 292  Q
    |||||||||||||||| |  ||||||||| |||||||||||||| ||||||    
T  44118428 caaacacatttatacaaccaacaacccaggaacctgagcaatgtggaactc 44118478  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 193 - 257
Target Start/End: Complemental strand, 10514992 - 10514928
Alignment:
Q  193 aatgagtttgaatcttatccgaaaagctagctcaaaggatgagagtacccaaacacatttataca 257  Q
    |||| ||||| |||| |||| |||||||| |||||||||||||| | ||||||||| ||| ||||    
T  10514992 aatgggtttggatctcatcccaaaagctacctcaaaggatgagaatgcccaaacacttttgtaca 10514928  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 204 - 308
Target Start/End: Original strand, 44019615 - 44019717
Alignment:
Q  204 atcttatccgaaaagctagctcaaaggatgagagtacccaaacacatttatacatctgacaacccagaaacctgagcaatgtcgaactcgaatacaattt 303  Q
    |||| |||| ||||| |||||||||||||||| || ||||||||||||||||||||  |||||| ||   || ||||||||| | |||| ||||||| ||    
T  44019615 atctcatcccaaaagttagctcaaaggatgagggtgcccaaacacatttatacatcaaacaacctag--gccagagcaatgtgggactccaatacaactt 44019712  T
Q  304 caata 308  Q
    |||||    
T  44019713 caata 44019717  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 193 - 283
Target Start/End: Original strand, 54137090 - 54137180
Alignment:
Q  193 aatgagtttgaatcttatccgaaaagctagctcaaaggatgagagtacccaaacacatttatacatctgacaacccagaaacctgagcaat 283  Q
    |||||| |||||||| ||   |||||||| |||||||| |||| || |||||||| |||||||||    |||||| |||||||||||||||    
T  54137090 aatgaggttgaatctcatatcaaaagctatctcaaagggtgagggtgcccaaacagatttatacactcaacaacctagaaacctgagcaat 54137180  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 204 - 257
Target Start/End: Complemental strand, 30525281 - 30525228
Alignment:
Q  204 atcttatccgaaaagctagctcaaaggatgagagtacccaaacacatttataca 257  Q
    |||| |||| |||||||||||||||| |||||||||| |||||| |||||||||    
T  30525281 atctcatcccaaaagctagctcaaagaatgagagtactcaaacatatttataca 30525228  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 215 - 308
Target Start/End: Original strand, 43541309 - 43541402
Alignment:
Q  215 aaagctagctcaaaggatgagagtacccaaacacatttatacatctgacaacccagaaacctgagcaatgtcgaactcgaatacaatttcaata 308  Q
    |||||||||||||||||| ||||| ||||| ||||| ||||||||  ||| ||  | ||||| ||||| || |||||| ||||||| |||||||    
T  43541309 aaagctagctcaaaggattagagtgcccaagcacatatatacatccaacagcctgggaaccttagcaaagtggaactccaatacaacttcaata 43541402  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 257
Target Start/End: Complemental strand, 27134226 - 27134162
Alignment:
Q  193 aatgagtttgaatcttatccgaaaagctagctcaaaggatgagagtacccaaacacatttataca 257  Q
    ||||||||||||||| |||| ||||||||  | ||||||||||||||  |||||| |||||||||    
T  27134226 aatgagtttgaatctcatcctaaaagctaagttaaaggatgagagtagtcaaacatatttataca 27134162  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 205 - 252
Target Start/End: Original strand, 36496135 - 36496182
Alignment:
Q  205 tcttatccgaaaagctagctcaaaggatgagagtacccaaacacattt 252  Q
    |||||| | |||||||||||||||||||||| || |||||||||||||    
T  36496135 tcttataccaaaagctagctcaaaggatgagggtgcccaaacacattt 36496182  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 200 - 259
Target Start/End: Original strand, 36496243 - 36496302
Alignment:
Q  200 ttgaatcttatccgaaaagctagctcaaaggatgagagtacccaaacacatttatacatc 259  Q
    |||||||| |||| |||||||||||||| ||||||| || || ||||| |||||||||||    
T  36496243 ttgaatctcatcccaaaagctagctcaatggatgagggtgcctaaacagatttatacatc 36496302  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 214 - 300
Target Start/End: Complemental strand, 3219826 - 3219740
Alignment:
Q  214 aaaagctagctcaaaggatgagagtacccaaacacatttatacatctgacaacccagaaacctgagcaatgtcgaactcgaatacaa 300  Q
    ||||||||||||||| ||||| ||| | |||||||||| |||||||  | || | |||||  |||||||||| |||||| |||||||    
T  3219826 aaaagctagctcaaatgatgaaagttctcaaacacattcatacatcccataatctagaaatttgagcaatgtagaactccaatacaa 3219740  T

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Target: scaffold0115 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 258
Target Start/End: Complemental strand, 46184 - 46135
Alignment:
Q  209 atccgaaaagctagctcaaaggatgagagtacccaaacacatttatacat 258  Q
    |||| |||| |||||||||||||| ||||||| ||| |||||||||||||    
T  46184 atcctaaaatctagctcaaaggataagagtactcaagcacatttatacat 46135  T

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