View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11745_low_57 (Length: 432)

Name: NF11745_low_57
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11745_low_57
NF11745_low_57
[»] chr1 (30 HSPs)
chr1 (157-426)||(37167723-37167987)
chr1 (187-314)||(40122577-40122704)
chr1 (187-432)||(7482703-7482946)
chr1 (187-426)||(47114626-47114862)
chr1 (187-314)||(8551168-8551295)
chr1 (187-309)||(834537-834659)
chr1 (187-430)||(28241843-28242082)
chr1 (326-432)||(34602811-34602916)
chr1 (326-432)||(34603167-34603272)
chr1 (348-432)||(47255806-47255889)
chr1 (187-276)||(3847446-3847535)
chr1 (329-431)||(19754085-19754186)
chr1 (387-432)||(29135899-29135944)
chr1 (210-334)||(32889822-32889947)
chr1 (189-292)||(34602930-34603032)
chr1 (394-432)||(37033541-37033579)
chr1 (196-293)||(47098400-47098497)
chr1 (196-292)||(34603058-34603153)
chr1 (196-293)||(9476687-9476784)
chr1 (394-432)||(11348356-11348394)
chr1 (329-427)||(31928277-31928375)
chr1 (387-432)||(193263-193308)
chr1 (387-432)||(13547561-13547606)
chr1 (387-432)||(13549472-13549517)
chr1 (210-293)||(197300-197384)
chr1 (387-427)||(6808097-6808137)
chr1 (210-293)||(47102427-47102511)
chr1 (329-432)||(19752280-19752382)
chr1 (348-426)||(41135433-41135510)
chr1 (387-432)||(37879383-37879428)
[»] chr6 (11 HSPs)
chr6 (149-432)||(5043043-5043324)
chr6 (204-432)||(2973412-2973638)
chr6 (149-314)||(28137790-28137955)
chr6 (187-314)||(16568703-16568830)
chr6 (200-314)||(16566879-16566993)
chr6 (387-432)||(3809181-3809226)
chr6 (387-432)||(26830596-26830641)
chr6 (210-271)||(31937023-31937085)
chr6 (387-432)||(17762638-17762683)
chr6 (387-424)||(22425306-22425343)
chr6 (387-432)||(21593317-21593362)
[»] chr8 (14 HSPs)
chr8 (113-314)||(6598558-6598760)
chr8 (113-314)||(6674011-6674213)
chr8 (202-314)||(1292833-1292946)
chr8 (255-314)||(41365229-41365288)
chr8 (200-334)||(19751973-19752108)
chr8 (123-287)||(5990083-5990248)
chr8 (149-243)||(41365280-41365374)
chr8 (387-432)||(11383637-11383682)
chr8 (387-432)||(44353446-44353491)
chr8 (348-429)||(2999996-3000077)
chr8 (387-432)||(4283197-4283242)
chr8 (387-432)||(42435463-42435508)
chr8 (387-432)||(40221395-40221441)
chr8 (394-430)||(20686531-20686567)
[»] chr3 (29 HSPs)
chr3 (116-314)||(39153739-39153937)
chr3 (115-336)||(29681948-29682168)
chr3 (187-430)||(46859924-46860164)
chr3 (187-428)||(41819997-41820238)
chr3 (188-314)||(9580944-9581070)
chr3 (149-292)||(22835404-22835547)
chr3 (187-303)||(760507-760623)
chr3 (149-314)||(32744808-32744979)
chr3 (187-314)||(19684270-19684397)
chr3 (187-312)||(37466700-37466826)
chr3 (348-430)||(54593317-54593398)
chr3 (387-432)||(4569602-4569647)
chr3 (387-432)||(49199943-49199988)
chr3 (329-432)||(30235718-30235821)
chr3 (200-293)||(3323259-3323352)
chr3 (348-430)||(35139188-35139269)
chr3 (387-432)||(28074268-28074313)
chr3 (387-432)||(34490864-34490909)
chr3 (387-432)||(40912989-40913034)
chr3 (387-432)||(43402262-43402307)
chr3 (387-432)||(43404205-43404250)
chr3 (387-428)||(5434355-5434396)
chr3 (387-432)||(31340513-31340558)
chr3 (348-432)||(55302437-55302520)
chr3 (387-430)||(36018501-36018544)
chr3 (354-432)||(47303870-47303948)
chr3 (387-432)||(6096071-6096116)
chr3 (389-426)||(26323991-26324028)
chr3 (389-429)||(50433022-50433061)
[»] chr2 (16 HSPs)
chr2 (116-314)||(42361942-42362140)
chr2 (187-314)||(11151972-11152099)
chr2 (188-432)||(42288581-42288822)
chr2 (166-314)||(724124-724272)
chr2 (187-336)||(34140130-34140278)
chr2 (157-308)||(14634211-14634362)
chr2 (149-314)||(11690123-11690288)
chr2 (354-432)||(7450919-7450997)
chr2 (387-432)||(1632204-1632249)
chr2 (348-432)||(35447356-35447439)
chr2 (348-432)||(45726543-45726626)
chr2 (394-432)||(17450249-17450287)
chr2 (187-240)||(14202830-14202882)
chr2 (157-233)||(14635189-14635264)
chr2 (286-314)||(14202787-14202815)
chr2 (387-427)||(33647819-33647859)
[»] chr4 (25 HSPs)
chr4 (149-432)||(46702915-46703197)
chr4 (187-430)||(41963869-41964110)
chr4 (187-428)||(378832-379070)
chr4 (187-432)||(12072845-12073089)
chr4 (167-296)||(5870027-5870156)
chr4 (329-432)||(8653193-8653296)
chr4 (329-432)||(8665000-8665103)
chr4 (149-280)||(47038817-47038949)
chr4 (387-432)||(50674318-50674363)
chr4 (348-432)||(26363878-26363961)
chr4 (348-432)||(27417423-27417506)
chr4 (356-432)||(50263170-50263245)
chr4 (394-432)||(54882678-54882716)
chr4 (395-432)||(6655615-6655652)
chr4 (331-432)||(10071480-10071581)
chr4 (387-432)||(46570018-46570063)
chr4 (348-430)||(22883227-22883308)
chr4 (348-430)||(22934891-22934972)
chr4 (387-432)||(2209359-2209404)
chr4 (387-432)||(40630635-40630680)
chr4 (387-432)||(55085838-55085883)
chr4 (394-430)||(38811553-38811589)
chr4 (387-430)||(47514976-47515019)
chr4 (264-304)||(24968857-24968898)
chr4 (394-426)||(35370816-35370848)
[»] chr7 (31 HSPs)
chr7 (187-430)||(3258448-3258689)
chr7 (19-115)||(26632490-26632586)
chr7 (190-314)||(41649390-41649514)
chr7 (157-314)||(25615487-25615644)
chr7 (187-314)||(38671602-38671729)
chr7 (25-115)||(26616965-26617060)
chr7 (19-115)||(26640359-26640460)
chr7 (187-291)||(31518465-31518570)
chr7 (19-110)||(26652373-26652469)
chr7 (196-334)||(9184746-9184886)
chr7 (348-432)||(32358308-32358391)
chr7 (329-432)||(4512861-4512963)
chr7 (210-334)||(9189593-9189718)
chr7 (329-432)||(6431565-6431667)
chr7 (329-432)||(30814359-30814461)
chr7 (387-432)||(29608392-29608437)
chr7 (387-432)||(48599796-48599841)
chr7 (333-432)||(4509169-4509267)
chr7 (333-432)||(4511011-4511109)
chr7 (215-312)||(23402605-23402703)
chr7 (73-115)||(26609755-26609797)
chr7 (387-432)||(6360384-6360429)
chr7 (19-72)||(26609816-26609869)
chr7 (388-432)||(2389934-2389978)
chr7 (387-430)||(22269625-22269668)
chr7 (387-430)||(34311191-34311234)
chr7 (394-428)||(2361447-2361481)
chr7 (200-312)||(20284494-20284605)
chr7 (19-62)||(26622426-26622469)
chr7 (394-430)||(5116292-5116328)
chr7 (394-430)||(22328874-22328910)
[»] chr5 (19 HSPs)
chr5 (167-432)||(27638086-27638349)
chr5 (202-335)||(31182648-31182780)
chr5 (149-292)||(5887818-5887961)
chr5 (167-315)||(16451730-16451879)
chr5 (225-303)||(8566328-8566407)
chr5 (200-312)||(24553106-24553218)
chr5 (348-432)||(28277926-28278011)
chr5 (348-432)||(5057662-5057744)
chr5 (329-432)||(213062-213164)
chr5 (387-432)||(38746656-38746701)
chr5 (387-430)||(30802592-30802635)
chr5 (352-430)||(16642351-16642428)
chr5 (196-293)||(28832667-28832764)
chr5 (387-432)||(27015183-27015228)
chr5 (387-432)||(40146912-40146957)
chr5 (200-314)||(31300175-31300289)
chr5 (260-315)||(33831413-33831468)
chr5 (384-429)||(14689883-14689928)
chr5 (200-271)||(17003538-17003609)
[»] scaffold0466 (1 HSPs)
scaffold0466 (387-432)||(6979-7024)
[»] scaffold0014 (1 HSPs)
scaffold0014 (388-432)||(80755-80799)
[»] scaffold0286 (1 HSPs)
scaffold0286 (395-432)||(11217-11254)


Alignment Details
Target: chr1 (Bit Score: 182; Significance: 3e-98; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 157 - 426
Target Start/End: Original strand, 37167723 - 37167987
Alignment:
Q  157 aattgtgacacgattttgagtggcgcgtcacgattttggtggtagaatggatggtttctgctgaaggcaaatcgtggcgcgattggtacaggcgtgacgc 256  Q
    ||||||| | ||||||| ||||||| | |||||||||| ||| |||| | ||||||||||||||||||||||||||||||||||||| |||| ||         
T  37167723 aattgtggcgcgattttcagtggcgtgacacgattttgttggcagaacgtatggtttctgctgaaggcaaatcgtggcgcgattggtgcaggtgt----- 37167817  T
Q  257 gatttgtggataaggttgtcgtacattgggtcgtacgcttcaaccgtggcgcgatttttggccggcgcagcgcgattttgacagatttgtcacactattt 356  Q
    |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||    
T  37167818 gatttgtggataaggttgtcgtaccttgggtcgtacgcttcaactgtggcgcgatttttggctggcgcagcgcgattttgacagatctgtcacactattt 37167917  T
Q  357 aagcactctatgacccatttagtgaaataggcttggggaatctcatggaaaccaaaggagggaactttta 426  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  37167918 aagcactctatgacccatttggtgaaataggcttggggaatctcatggaaatcaaaggagggaactttta 37167987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 187 - 314
Target Start/End: Complemental strand, 40122704 - 40122577
Alignment:
Q  187 cgattttggtggtagaatggatggtttctgctgaaggcaaatcgtggcgcgattggtacaggcgtgacgcgatttgtggataaggttgtcgtacattggg 286  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||||||| |||||    
T  40122704 cgattttggtggcagaatggatggtttctgctgaaggcaaatcgtggcacgattggtgcaggcgtgacacgatttgtggataaggttgtcgtaccttggg 40122605  T
Q  287 tcgtacgcttcaaccgtggcgcgatttt 314  Q
    ||||||||||||||||||||||||||||    
T  40122604 tcgtacgcttcaaccgtggcgcgatttt 40122577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 187 - 432
Target Start/End: Complemental strand, 7482946 - 7482703
Alignment:
Q  187 cgattttggtggtagaatggatggtttctgctgaaggcaaatcgtggcgcgattg-gtacaggcgtgacgcgatttgtggataaggttgtcgtacattgg 285  Q
    |||||||| ||| ||||||||||||||||||||||| |||||| ||||||||||  || |||  ||||| |||||| |||||||||| || |||| ||||    
T  7482946 cgattttgctggcagaatggatggtttctgctgaag-caaatcatggcgcgattttgtgcagt-gtgacacgatttctggataaggtcgttgtaccttgg 7482849  T
Q  286 gtcgtacgct-tcaaccgtggcgcgatttttggccggcgcagcgcgattttgacagatttgtcacactatttaagcactctatgacccatttagtgaaat 384  Q
    ||||||| |  | ||| ||||||| ||||| ||  ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |||    
T  7482848 gtcgtacacaatgaactgtggcgcaatttt-ggatggcgcagcgcgattttgacagatctgtcacactatttaagcacactatgacccatttagtg-aat 7482751  T
Q  385 aggcttggggaatctcatggaaaccaaaggagggaacttttagggttt 432  Q
    | | |||| |||||||||||||||||||||||| ||||||||||||||    
T  7482750 aagtttggtgaatctcatggaaaccaaaggaggaaacttttagggttt 7482703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 187 - 426
Target Start/End: Original strand, 47114626 - 47114862
Alignment:
Q  187 cgattttggtggtagaatggatggtttctgctgaaggcaaatcgtggcgcgattg-gtacaggcgtgacgcgatttgtggataaggttgtcgtacattgg 285  Q
    |||||||| ||||||||||||||||||||||||||| |||||| ||||||||||  || ||| |||||| |||||| ||||||||| ||| |||| ||||    
T  47114626 cgattttgctggtagaatggatggtttctgctgaag-caaatcatggcgcgattttgtgcag-cgtgacacgatttttggataaggctgttgtaccttgg 47114723  T
Q  286 gtcgtacgct-tcaaccgtggcgcgatttttggccggcgcagcgcgattttgacagatttgtcacactatttaagcactctatgacccatttagtgaaat 384  Q
    ||||||| |  | ||||||||||||||||| |||  |||| ||||||||||||||||| |||||||||||||||||||||||||| |||||| || |||     
T  47114724 gtcgtacacaatgaaccgtggcgcgatttt-ggctagcgcggcgcgattttgacagatctgtcacactatttaagcactctatgatccattt-gttaaa- 47114820  T
Q  385 aggcttggggaatctcatggaaaccaaaggagggaactttta 426  Q
    | | |||| |||||||||||||||||||||||||||||||||    
T  47114821 aagtttggtgaatctcatggaaaccaaaggagggaactttta 47114862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 187 - 314
Target Start/End: Complemental strand, 8551295 - 8551168
Alignment:
Q  187 cgattttggtggtagaatggatggtttctgctgaaggcaaatcgtggcgcgattg-gtacaggcgtgacgcgatttgtggataaggttgtcgtacattgg 285  Q
    |||||||| ||| ||||||||||||||||||||||| ||||||||||| |||||  || ||| |||||||||||||||||||||||||||||||| ||||    
T  8551295 cgattttgctggcagaatggatggtttctgctgaag-caaatcgtggcacgattttgtgcagccgtgacgcgatttgtggataaggttgtcgtaccttgg 8551197  T
Q  286 gtcgtacgcttcaaccgtggcgcgatttt 314  Q
    |||||||||||||||||||||||||||||    
T  8551196 gtcgtacgcttcaaccgtggcgcgatttt 8551168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 187 - 309
Target Start/End: Complemental strand, 834659 - 834537
Alignment:
Q  187 cgattttggtggtagaatggatggtttctgctgaaggcaaatcgtggcgcgattg-gtacaggcgtgacgcgatttgtggataaggttgtcgtacattgg 285  Q
    |||||||| ||| ||||||||||||||||||| ||| |||||||||||||||||  || |||||||||| ||||||||||||||||||||||||| ||||    
T  834659 cgattttgctggcagaatggatggtttctgctaaag-caaatcgtggcgcgattctgtgcaggcgtgacacgatttgtggataaggttgtcgtaccttgg 834561  T
Q  286 gtcgtacgcttcaaccgtggcgcg 309  Q
    ||||||||||||||||||||||||    
T  834560 gtcgtacgcttcaaccgtggcgcg 834537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 187 - 430
Target Start/End: Original strand, 28241843 - 28242082
Alignment:
Q  187 cgattttggtggtagaatggatggtttctgctgaaggcaaatcgtggcgcga-ttggtacaggcgtgacgcgatttgtggataaggttgtcgtacattgg 285  Q
    |||||||| | | |||||||||||||||||||||| ||||||| |||||| | || || || ||||||| |||||| |||||||||  || |||| ||||    
T  28241843 cgattttgcttgcagaatggatggtttctgctgaa-gcaaatcatggcgcaattttgtgca-gcgtgacacgatttctggataaggccgttgtaccttgg 28241940  T
Q  286 gtcgtacgc-ttcaaccgtggcgcgatttttggccggcgcagcgcgattttgacagatttgtcacactatttaagcactctatgacccatttagtgaaat 384  Q
    ||||||| |  | ||| ||||||||| |||||||  |||| || ||||||||||||||||||||||||| |||||||||||||||||||||| || |||     
T  28241941 gtcgtacacaatgaacagtggcgcga-ttttggctcgcgcggcacgattttgacagatttgtcacacta-ttaagcactctatgacccattt-gttaaa- 28242036  T
Q  385 aggcttggggaatctcatggaaaccaaaggagggaacttttagggt 430  Q
    | | |||| |||||||||| ||||||||||||||||||||||||||    
T  28242037 aagtttggtgaatctcatgaaaaccaaaggagggaacttttagggt 28242082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 326 - 432
Target Start/End: Complemental strand, 34602916 - 34602811
Alignment:
Q  326 gcgcgattttgacagatttgtcacactatttaagcactctatgacccatttagtgaaataggcttggggaatctcatggaaaccaaaggagggaactttt 425  Q
    ||||||||||||||||| | |||||||||||||||||||||||||||||||  || || | |||||| ||||||||||||||||||||||||||||||||    
T  34602916 gcgcgattttgacagatctatcacactatttaagcactctatgacccatttgttggaa-aagcttggtgaatctcatggaaaccaaaggagggaactttt 34602818  T
Q  426 agggttt 432  Q
    |||||||    
T  34602817 agggttt 34602811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 326 - 432
Target Start/End: Original strand, 34603167 - 34603272
Alignment:
Q  326 gcgcgattttgacagatttgtcacactatttaagcactctatgacccatttagtgaaataggcttggggaatctcatggaaaccaaaggagggaactttt 425  Q
    ||||||||||||||||| | |||||||||||||||||||||||||||||||  || || | |||||| ||||||||||||||||||||||||||||||||    
T  34603167 gcgcgattttgacagatctatcacactatttaagcactctatgacccatttgttggaa-aagcttggtgaatctcatggaaaccaaaggagggaactttt 34603265  T
Q  426 agggttt 432  Q
    |||||||    
T  34603266 agggttt 34603272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 348 - 432
Target Start/End: Complemental strand, 47255889 - 47255806
Alignment:
Q  348 acactatttaagcactctatgacccatttagtgaaataggcttggggaatctcatggaaaccaaaggagggaacttttagggttt 432  Q
    ||||||||||||||||  |||||||||||  ||   || |||||| |||||||||||||||||||||||||||||||||||||||    
T  47255889 acactatttaagcacttcatgacccatttgttggg-taagcttggtgaatctcatggaaaccaaaggagggaacttttagggttt 47255806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 187 - 276
Target Start/End: Complemental strand, 3847535 - 3847446
Alignment:
Q  187 cgattttggtggtagaatggatggtttctgctgaaggcaaatcgtggcgcgattg-gtacaggcgtgacgcgatttgtggataaggttgtc 276  Q
    |||||||| ||| ||||||||| |||||||||||||| ||||| ||||||||||  || | |||||| |||||||||||||||||||||||    
T  3847535 cgattttgctggcagaatggatagtttctgctgaagg-aaatcatggcgcgattttgtgcgggcgtggcgcgatttgtggataaggttgtc 3847446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 329 - 431
Target Start/End: Original strand, 19754085 - 19754186
Alignment:
Q  329 cgattttgacagatttgtcacactatttaagcactctatgacccatttagtgaaataggcttggggaatctcatggaaaccaaaggagggaacttttagg 428  Q
    |||||||||||||| |   ||||  ||||||||||| |||||||||||  ||   || |||||| |||||||||||||||||||||||||||||||||||    
T  19754085 cgattttgacagatctaaaacacgttttaagcactccatgacccatttgttggg-taagcttggtgaatctcatggaaaccaaaggagggaacttttagg 19754183  T
Q  429 gtt 431  Q
    |||    
T  19754184 gtt 19754186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 387 - 432
Target Start/End: Original strand, 29135899 - 29135944
Alignment:
Q  387 gcttggggaatctcatggaaaccaaaggagggaacttttagggttt 432  Q
    |||||| |||||||||||||||||||||||||||||||||||||||    
T  29135899 gcttggtgaatctcatggaaaccaaaggagggaacttttagggttt 29135944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 210 - 334
Target Start/End: Complemental strand, 32889947 - 32889822
Alignment:
Q  210 gtttctgctgaaggcaaatcgtggcgcgattggtacaggcgtgacgcgatttgtggataaggttgtcgtacattgggtcgtacgctt-caaccgtggcgc 308  Q
    |||| |||||||||||||||| |||||  || |||| | |||| | ||||||||||||||||| || |||| |||||||||||||||  || |||||| |    
T  32889947 gtttttgctgaaggcaaatcgcggcgcattttgtactgacgtggcacgatttgtggataaggtcgttgtaccttgggtcgtacgcttaaaatcgtggcac 32889848  T
Q  309 gatttttggccggcgcagcgcgattt 334  Q
    ||||||| || ||||| ||| |||||    
T  32889847 gatttttagcaggcgcggcgtgattt 32889822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 189 - 292
Target Start/End: Complemental strand, 34603032 - 34602930
Alignment:
Q  189 attttggtggtagaatggatggtttctgctgaaggcaaatcgtggcgcga-ttggtacaggcgtgacgcgatttgtggataaggttgtcgtacattgggt 287  Q
    |||||| |||||||||||||||||||||||||| |||||| ||||||||| || || || ||||||| | |||| |||||||||| || |||| ||||||    
T  34603032 attttgctggtagaatggatggtttctgctgaa-gcaaattgtggcgcgattttgtgca-gcgtgacacaatttctggataaggtcgttgtaccttgggt 34602935  T
Q  288 cgtac 292  Q
    |||||    
T  34602934 cgtac 34602930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 394 - 432
Target Start/End: Complemental strand, 37033579 - 37033541
Alignment:
Q  394 gaatctcatggaaaccaaaggagggaacttttagggttt 432  Q
    |||||||||||||||||||||||||||||||||||||||    
T  37033579 gaatctcatggaaaccaaaggagggaacttttagggttt 37033541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 196 - 293
Target Start/End: Original strand, 47098400 - 47098497
Alignment:
Q  196 tggtagaatggatggtttctgctgaaggcaaatcgtggcgcgattg-gtacaggcgtgacgcgatttgtggataaggttgtcgtacattgggtcgtacg 293  Q
    |||||||||||||| ||| ||||||||| |||||| |||||||||  |||| |||||| ||| |||| |||||||||| || |||| ||||||||||||    
T  47098400 tggtagaatggatgtttt-tgctgaaggtaaatcgcggcgcgattcagtactggcgtggcgcaatttatggataaggtcgttgtaccttgggtcgtacg 47098497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 196 - 292
Target Start/End: Original strand, 34603058 - 34603153
Alignment:
Q  196 tggtagaatggatggtttctgctgaaggcaaatcgtggcgcga-ttggtacaggcgtgacgcgatttgtggataaggttgtcgtacattgggtcgtac 292  Q
    |||||||||||||||||||||||||| |||||| ||||||||| || || || ||||||| | |||| |||||||||| || |||| |||||||||||    
T  34603058 tggtagaatggatggtttctgctgaa-gcaaatagtggcgcgattttgtgca-gcgtgacacaatttctggataaggtcgttgtaccttgggtcgtac 34603153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 196 - 293
Target Start/End: Complemental strand, 9476784 - 9476687
Alignment:
Q  196 tggtagaatggatggtttctgctgaaggcaaatcgtggcgcgattg-gtacaggcgtgacgcgatttgtggataaggttgtcgtacattgggtcgtacg 293  Q
    |||||||||||||| ||| || ||||||||||||  |||||||||  ||||  ||||| ||||||| ||||||||||| || |||| ||||||||||||    
T  9476784 tggtagaatggatgtttt-tgttgaaggcaaatcacggcgcgatttagtactagcgtggcgcgattcgtggataaggtcgttgtaccttgggtcgtacg 9476687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 394 - 432
Target Start/End: Original strand, 11348356 - 11348394
Alignment:
Q  394 gaatctcatggaaaccaaaggagggaacttttagggttt 432  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  11348356 gaatctcatggaaaccaaaggatggaacttttagggttt 11348394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 329 - 427
Target Start/End: Complemental strand, 31928375 - 31928277
Alignment:
Q  329 cgattttgacagatttgtcacactatttaagcactctatgacccatttagtgaaataggcttggggaatctcatggaaaccaaaggagggaacttttag 427  Q
    |||||||||||||| ||  ||||   |||||||||| |||||||||||  |    || |||||| |||| |||||||||||||||||||||||||||||    
T  31928375 cgattttgacagatctgaaacacgtcttaagcactccatgacccatttgattgggtaagcttggtgaatttcatggaaaccaaaggagggaacttttag 31928277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 387 - 432
Target Start/End: Original strand, 193263 - 193308
Alignment:
Q  387 gcttggggaatctcatggaaaccaaaggagggaacttttagggttt 432  Q
    |||||| |||||||||||||||||||||||  ||||||||||||||    
T  193263 gcttggtgaatctcatggaaaccaaaggagataacttttagggttt 193308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 387 - 432
Target Start/End: Complemental strand, 13547606 - 13547561
Alignment:
Q  387 gcttggggaatctcatggaaaccaaaggagggaacttttagggttt 432  Q
    |||||| ||||||||||||||||||||||| |||||||||| ||||    
T  13547606 gcttggtgaatctcatggaaaccaaaggagagaacttttagagttt 13547561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 387 - 432
Target Start/End: Complemental strand, 13549517 - 13549472
Alignment:
Q  387 gcttggggaatctcatggaaaccaaaggagggaacttttagggttt 432  Q
    |||||| ||||||||||||||||||||||| |||||||||| ||||    
T  13549517 gcttggtgaatctcatggaaaccaaaggagagaacttttagagttt 13549472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 210 - 293
Target Start/End: Complemental strand, 197384 - 197300
Alignment:
Q  210 gtttctgctgaaggcaaatcgtggcgcgattg-gtacaggcgtgacgcgatttgtggataaggttgtcgtacattgggtcgtacg 293  Q
    |||| |||| ||||||||||| ||||| |||  |||| |||||| ||||||||||||||||||  || |||| ||||||||||||    
T  197384 gtttttgctaaaggcaaatcgcggcgcaatttagtactggcgtggcgcgatttgtggataaggacgttgtaccttgggtcgtacg 197300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 387 - 427
Target Start/End: Original strand, 6808097 - 6808137
Alignment:
Q  387 gcttggggaatctcatggaaaccaaaggagggaacttttag 427  Q
    |||||| |||||||||||||||||||||||| |||||||||    
T  6808097 gcttggtgaatctcatggaaaccaaaggaggaaacttttag 6808137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 210 - 293
Target Start/End: Original strand, 47102427 - 47102511
Alignment:
Q  210 gtttctgctgaaggcaaatcgtggcgcgattg-gtacaggcgtgacgcgatttgtggataaggttgtcgtacattgggtcgtacg 293  Q
    |||| ||||||||| |||||| |  ||||||  |||| |||||| ||||||||||||||||||| || |||| ||||||||||||    
T  47102427 gtttttgctgaaggtaaatcgcgatgcgatttagtactggcgtggcgcgatttgtggataaggtcgttgtaccttgggtcgtacg 47102511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 329 - 432
Target Start/End: Original strand, 19752280 - 19752382
Alignment:
Q  329 cgattttgacagatttgtcacactatttaagcactctatgacccatttagtgaaataggcttggggaatctcatggaaaccaaaggagggaacttttagg 428  Q
    |||||||||| ||| ||  ||||  ||||||||||| |||||||||||  ||   || |||||| |||||||||| |||||||| ||||||| |||||||    
T  19752280 cgattttgacggatctgaaacacgttttaagcactccatgacccatttgttggg-taagcttggtgaatctcatgaaaaccaaatgagggaatttttagg 19752378  T
Q  429 gttt 432  Q
    ||||    
T  19752379 gttt 19752382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 348 - 426
Target Start/End: Original strand, 41135433 - 41135510
Alignment:
Q  348 acactatttaagcactctatgacccatttagtgaaataggcttggggaatctcatggaaaccaaaggagggaactttta 426  Q
    ||||||||||||| ||   ||||||||||  |||| || ||||||  |||||||||||||||||||||||||| |||||    
T  41135433 acactatttaagcgctgcttgacccatttgttgaa-taagcttggttaatctcatggaaaccaaaggagggaaatttta 41135510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 432
Target Start/End: Complemental strand, 37879428 - 37879383
Alignment:
Q  387 gcttggggaatctcatggaaaccaaaggagggaacttttagggttt 432  Q
    |||||| |||||||||||||| ||||||| |||||| |||||||||    
T  37879428 gcttggtgaatctcatggaaatcaaaggaaggaactgttagggttt 37879383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 172; Significance: 3e-92; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 149 - 432
Target Start/End: Original strand, 5043043 - 5043324
Alignment:
Q  149 aaactcataattgtgacacgattttgagtggcgcgtcacgattttggtggtagaatggatggtttctgctgaaggcaaatcgtggcgcgattggtacagg 248  Q
    ||||||||||||||||||||||| ||||||||| | ||| |||||| ||| |||| | ||||||||||||||||||||||||||| |||||| || ||||    
T  5043043 aaactcataattgtgacacgattatgagtggcgtgacacaattttgttggcagaacgtatggtttctgctgaaggcaaatcgtggtgcgatttgtgcagg 5043142  T
Q  249 cgtgacgcgatttgtggataaggttgtcgtacattgggtcgtacgcttcaaccgtggcgcgatttttggccggcgcagcgcgattttgacagatttgtca 348  Q
    ||||||||||||||||||||||||| |||||| |||| ||||||||||||||| |||||||| ||||||| |||||| |||||||||||||||| |||||    
T  5043143 cgtgacgcgatttgtggataaggttatcgtaccttggatcgtacgcttcaaccatggcgcga-ttttggctggcgcaacgcgattttgacagatctgtca 5043241  T
Q  349 cactatttaagcactctatgacccatttagtgaaataggcttggggaatctcatggaaaccaaaggagggaacttttagggttt 432  Q
    ||||||||||||||||||||||||||||| | |||   |||||| |||||||||||||| ||||||||||||||||||||||||    
T  5043242 cactatttaagcactctatgacccattta-ttaaaggagcttggtgaatctcatggaaatcaaaggagggaacttttagggttt 5043324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 204 - 432
Target Start/End: Complemental strand, 2973638 - 2973412
Alignment:
Q  204 tggatggtttctgctgaaggcaaatcgtggcgcgattg-gtacaggcgtgacgcgatttgtggataaggttgtcgtacattgggtcgtacgct-tcaacc 301  Q
    |||||||||||| |||| | |||||||||||||||||  || ||| |||||| |||||| |||||||||| || |||| ||||||||||| |  | ||||    
T  2973638 tggatggtttctactgacg-caaatcgtggcgcgattttgtgcag-cgtgacacgatttctggataaggtcgttgtaccttgggtcgtacacaatgaacc 2973541  T
Q  302 gtggcgcgatttttggccggcgcagcgcgattttgacagatttgtcacactatttaagcactctatgacccatttagtgaaataggcttggggaatctca 401  Q
    ||||||| ||||| |||  |||| |||| |||||||||||| |||||||||||||||||||| |||||||||||| || ||     ||||| ||||||||    
T  2973540 gtggcgcaatttt-ggctagcgcggcgcaattttgacagatctgtcacactatttaagcactttatgacccattt-gttaagagaccttggtgaatctca 2973443  T
Q  402 tggaaaccaaaggagggaacttttagggttt 432  Q
    |||||||||||||||||||||||||||||||    
T  2973442 tggaaaccaaaggagggaacttttagggttt 2973412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 149 - 314
Target Start/End: Complemental strand, 28137955 - 28137790
Alignment:
Q  149 aaactcataattgtgacacgattttgagtggcgcgtcacgattttggtggtagaatggatggtttctgctgaaggcaaatcgtggcgcgattggtacagg 248  Q
    ||||||||||| ||||||||||| ||| ||||| | |||||||||| ||| |||| | ||||||||||||||||| |||| ||||| ||||| || ||||    
T  28137955 aaactcataatcgtgacacgattatgaatggcgtgacacgattttgttggcagaacgtatggtttctgctgaaggaaaattgtggcacgatttgtgcagg 28137856  T
Q  249 cgtgacgcgatttgtggataaggttgtcgtacattgggtcgtacgcttcaaccgtggcgcgatttt 314  Q
    ||||| ||||||| |||||||||||||||||| ||||||||||| | |||| |||| | |||||||    
T  28137855 cgtgatgcgatttatggataaggttgtcgtaccttgggtcgtactcatcaatcgtgacacgatttt 28137790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 187 - 314
Target Start/End: Original strand, 16568703 - 16568830
Alignment:
Q  187 cgattttggtggtagaatggatggtttctgctgaaggcaaatcgtggcgcgattg-gtacaggcgtgacgcgatttgtggataaggttgtcgtacattgg 285  Q
    |||||||| ||  ||||| ||||||||||||||||| |||||||||||||||||  || ||  |||||||| ||||||||||||||||||||||| ||||    
T  16568703 cgattttgctgccagaatagatggtttctgctgaag-caaatcgtggcgcgattttgtgcaaccgtgacgcaatttgtggataaggttgtcgtaccttgg 16568801  T
Q  286 gtcgtacgcttcaaccgtggcgcgatttt 314  Q
    ||||||||||||||| |||||||||||||    
T  16568802 gtcgtacgcttcaactgtggcgcgatttt 16568830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 200 - 314
Target Start/End: Original strand, 16566879 - 16566993
Alignment:
Q  200 agaatggatggtttctgctgaaggcaaatcgtggcgcgattg-gtacaggcgtgacgcgatttgtggataaggttgtcgtacattgggtcgtacgcttca 298  Q
    ||||||||||||||||||||||| |||||||||||||||||  || ||  | ||||||||||||||||| |||||||||||| |||||||||||||||||    
T  16566879 agaatggatggtttctgctgaag-caaatcgtggcgcgattttgtgcaaccatgacgcgatttgtggatgaggttgtcgtaccttgggtcgtacgcttca 16566977  T
Q  299 accgtggcgcgatttt 314  Q
    |||||||||| |||||    
T  16566978 accgtggcgcaatttt 16566993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 387 - 432
Target Start/End: Complemental strand, 3809226 - 3809181
Alignment:
Q  387 gcttggggaatctcatggaaaccaaaggagggaacttttagggttt 432  Q
    |||||| |||||||||||||||||||||||||||||||||||||||    
T  3809226 gcttggtgaatctcatggaaaccaaaggagggaacttttagggttt 3809181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 387 - 432
Target Start/End: Complemental strand, 26830641 - 26830596
Alignment:
Q  387 gcttggggaatctcatggaaaccaaaggagggaacttttagggttt 432  Q
    |||||| |||||||||||||||||||||||||||||||||||||||    
T  26830641 gcttggtgaatctcatggaaaccaaaggagggaacttttagggttt 26830596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 210 - 271
Target Start/End: Complemental strand, 31937085 - 31937023
Alignment:
Q  210 gtttctgctgaaggcaaatcgtggcgcga-ttggtacaggcgtgacgcgatttgtggataagg 271  Q
    |||| |||||||||||||||| ||||||| || |||| |||||| ||||||||||||||||||    
T  31937085 gtttttgctgaaggcaaatcgcggcgcgatttagtactggcgtggcgcgatttgtggataagg 31937023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 387 - 432
Target Start/End: Original strand, 17762638 - 17762683
Alignment:
Q  387 gcttggggaatctcatggaaaccaaaggagggaacttttagggttt 432  Q
    |||||| ||||||||||||||| ||||||| |||||||||||||||    
T  17762638 gcttggtgaatctcatggaaacaaaaggagagaacttttagggttt 17762683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 387 - 424
Target Start/End: Complemental strand, 22425343 - 22425306
Alignment:
Q  387 gcttggggaatctcatggaaaccaaaggagggaacttt 424  Q
    |||||| |||||||||||||||||||||||||||||||    
T  22425343 gcttggtgaatctcatggaaaccaaaggagggaacttt 22425306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 432
Target Start/End: Original strand, 21593317 - 21593362
Alignment:
Q  387 gcttggggaatctcatggaaaccaaaggagggaacttttagggttt 432  Q
    |||||| |||||||||||||||||||||   |||||||||||||||    
T  21593317 gcttggtgaatctcatggaaaccaaaggttagaacttttagggttt 21593362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 143; Significance: 6e-75; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 113 - 314
Target Start/End: Original strand, 6598558 - 6598760
Alignment:
Q  113 tattgttgtaatttgccttcaaattagtgttgctggaaactcata-attgtgacacgattttgagtggcgcgtcacgattttggtggtagaatggatggt 211  Q
    ||||||||||||||||||||||||||||||||||||||||||| | || |||| ||||||||||||||| ||||||||||||||||| ||||||| ||||    
T  6598558 tattgttgtaatttgccttcaaattagtgttgctggaaactcacatatcgtgatacgattttgagtggcacgtcacgattttggtggcagaatgggtggt 6598657  T
Q  212 ttctgctgaaggcaaatcgtggcgcgattggtacaggcgtgacgcgatttgtggataaggttgtcgtacattgggtcgtacgcttcaaccgtggcgcgat 311  Q
    || ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| ||| | | ||||||||||||||||||||||    
T  6598658 ttatgctgaaggcaaatcgtggcgcgattggtgcaggtgtgacgcgatttgtggataaggttgtcgtaccttgcgccatacgcttcaaccgtggcgcgat 6598757  T
Q  312 ttt 314  Q
    |||    
T  6598758 ttt 6598760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 113 - 314
Target Start/End: Original strand, 6674011 - 6674213
Alignment:
Q  113 tattgttgtaatttgccttcaaattagtgttgctggaaactcata-attgtgacacgattttgagtggcgcgtcacgattttggtggtagaatggatggt 211  Q
    ||||||||||||||||||||||||||||||||||||||||||| | || |||| ||||||||||||||| ||||||||||||||||| ||||||| ||||    
T  6674011 tattgttgtaatttgccttcaaattagtgttgctggaaactcacatatcgtgatacgattttgagtggcacgtcacgattttggtggcagaatgggtggt 6674110  T
Q  212 ttctgctgaaggcaaatcgtggcgcgattggtacaggcgtgacgcgatttgtggataaggttgtcgtacattgggtcgtacgcttcaaccgtggcgcgat 311  Q
    || ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| ||| | | ||||||||||||||||||||||    
T  6674111 ttatgctgaaggcaaatcgtggcgcgattggtgcaggtgtgacgcgatttgtggataaggttgtcgtaccttgcgccatacgcttcaaccgtggcgcgat 6674210  T
Q  312 ttt 314  Q
    |||    
T  6674211 ttt 6674213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 202 - 314
Target Start/End: Complemental strand, 1292946 - 1292833
Alignment:
Q  202 aatggatggtttctgctgaaggcaaatcgtggcgcgattg-gtacaggcgtgacgcgatttgtggataaggttgtcgtacattgggtcgtacgcttcaac 300  Q
    |||||||||||||||||||||| ||||| ||||||||||  ||| ||||||||| |||||| ||||||| |||||||||| ||||||||||||| | ||     
T  1292946 aatggatggtttctgctgaaggaaaatcatggcgcgatttcgtataggcgtgacacgatttctggataaagttgtcgtaccttgggtcgtacgcataaat 1292847  T
Q  301 cgtggcgcgatttt 314  Q
     |||||||||||||    
T  1292846 tgtggcgcgatttt 1292833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 255 - 314
Target Start/End: Complemental strand, 41365288 - 41365229
Alignment:
Q  255 gcgatttgtggataaggttgtcgtacattgggtcgtacgcttcaaccgtggcgcgatttt 314  Q
    |||||| ||||||||||||||||||| ||||||| |||||||||||||||||||||||||    
T  41365288 gcgattggtggataaggttgtcgtaccttgggtcatacgcttcaaccgtggcgcgatttt 41365229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 200 - 334
Target Start/End: Original strand, 19751973 - 19752108
Alignment:
Q  200 agaatggatggtttctgctgaaggcaaatcgtggcgcgattg-gtacaggcgtgacgcgatttgtggataaggttgtcgtacattgggtcgtacgct-tc 297  Q
    |||||||||| ||| |||||||||||||||| |||||||||  |||| |||||| ||||||| |||||||||| ||| |||| |||||||||||| |       
T  19751973 agaatggatgtttt-tgctgaaggcaaatcgcggcgcgatttagtactggcgtggcgcgattggtggataaggatgttgtaccttgggtcgtacgttaaa 19752071  T
Q  298 aaccgtggcgcgatttttggccggcgcagcgcgattt 334  Q
    || |||||| |||||||| || ||||| |||||||||    
T  19752072 aatcgtggcacgatttttagcaggcgcggcgcgattt 19752108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 123 - 287
Target Start/End: Original strand, 5990083 - 5990248
Alignment:
Q  123 atttgccttcaaattagtgttgctggaaact-cataattgtgacacgattttgagtggcgcgtcacgattttggtggtagaatggatggtttctgctgaa 221  Q
    ||||| |||||||||||||||  | |||| | |||||| ||||||||||| || | |||| ||| ||||||| | || || | | ||||||| | |||||    
T  5990083 atttgacttcaaattagtgttcttagaaagttcataatcgtgacacgattatg-gaggcgtgtcgcgattttcgaggcaggaagcatggtttttcctgaa 5990181  T
Q  222 ggcaaatcgtggcgcgattggta-caggcgtgacgcgatttgtggataaggttgtcgtacattgggt 287  Q
    ||||||||||| | ||||| ||  |||||||||| |||||| ||||||||||||| |||||||||||    
T  5990182 ggcaaatcgtgacacgatttgtggcaggcgtgacacgatttatggataaggttgttgtacattgggt 5990248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 149 - 243
Target Start/End: Complemental strand, 41365374 - 41365280
Alignment:
Q  149 aaactcataattgtgacacgattttgagtggcgcgtcacgattttggtggtagaatggatggtttctgctgaaggcaaatcgtggcgcgattggt 243  Q
    ||||||||||| ||||||||||| ||| | ||| | |||||||||| ||| |||| | ||||||||||||||||| |||| |||| |||||||||    
T  41365374 aaactcataatcgtgacacgattatgaattgcgtgacacgattttgttggcagaacgtatggtttctgctgaaggaaaattgtggtgcgattggt 41365280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 387 - 432
Target Start/End: Original strand, 11383637 - 11383682
Alignment:
Q  387 gcttggggaatctcatggaaaccaaaggagggaacttttagggttt 432  Q
    |||||| |||||||||||||||||||||||||||||||||||||||    
T  11383637 gcttggtgaatctcatggaaaccaaaggagggaacttttagggttt 11383682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 387 - 432
Target Start/End: Original strand, 44353446 - 44353491
Alignment:
Q  387 gcttggggaatctcatggaaaccaaaggagggaacttttagggttt 432  Q
    |||||| |||||||||||||||||||||||||||||||||||||||    
T  44353446 gcttggtgaatctcatggaaaccaaaggagggaacttttagggttt 44353491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 348 - 429
Target Start/End: Complemental strand, 3000077 - 2999996
Alignment:
Q  348 acactatttaagcactctatgacccatttagtgaaataggcttggggaatctcatggaaaccaaaggagggaacttttaggg 429  Q
    ||||| |||||||||| ||||||||| ||  ||||| |  ||||| ||||||||| ||||||||||||| ||||||||||||    
T  3000077 acactgtttaagcactttatgacccaattgttgaaaaaaccttggtgaatctcatagaaaccaaaggagagaacttttaggg 2999996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 387 - 432
Target Start/End: Original strand, 4283197 - 4283242
Alignment:
Q  387 gcttggggaatctcatggaaaccaaaggagggaacttttagggttt 432  Q
    |||||| ||||||||||||||||||||||| |||||||||||||||    
T  4283197 gcttggtgaatctcatggaaaccaaaggagagaacttttagggttt 4283242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 387 - 432
Target Start/End: Complemental strand, 42435508 - 42435463
Alignment:
Q  387 gcttggggaatctcatggaaaccaaaggagggaacttttagggttt 432  Q
    |||||| |||||||||||||||||||||||| ||||||||||||||    
T  42435508 gcttggtgaatctcatggaaaccaaaggaggaaacttttagggttt 42435463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 387 - 432
Target Start/End: Original strand, 40221395 - 40221441
Alignment:
Q  387 gcttggggaatctcatggaaaccaaagga-gggaacttttagggttt 432  Q
    |||||| ||||||||||||||||| |||| |||||||||||||||||    
T  40221395 gcttggtgaatctcatggaaaccataggaggggaacttttagggttt 40221441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 394 - 430
Target Start/End: Complemental strand, 20686567 - 20686531
Alignment:
Q  394 gaatctcatggaaaccaaaggagggaacttttagggt 430  Q
    ||||||||| ||||||||||||||||||||| |||||    
T  20686567 gaatctcattgaaaccaaaggagggaactttcagggt 20686531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 139; Significance: 1e-72; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 116 - 314
Target Start/End: Complemental strand, 39153937 - 39153739
Alignment:
Q  116 tgttgtaatttgccttcaaattagtgttgctggaaactcataattgtgacacgattttgagtggcgcgtcacgattttggtggtagaatggatggtttct 215  Q
    |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||    
T  39153937 tgttgtaatttgccttcaaattcgtgttgctggaaactcataatcgtgacacgattttgagtggcgcgtcacgattttgatggcagaatggatggtttct 39153838  T
Q  216 gctgaaggcaaatcgtggcgcgattggtacaggcgtgacgcgatttgtggataaggttgtcgtacattgggtcgtacgcttcaaccgtggcgcgatttt 314  Q
    |||||||||||| |||| ||||||| || ||||||||||||||||| |||||||||||||||||| ||||||||||| | |||| |||| | |||||||    
T  39153837 gctgaaggcaaaacgtgacgcgatttgtgcaggcgtgacgcgatttatggataaggttgtcgtaccttgggtcgtactcatcaatcgtgacacgatttt 39153739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 115 - 336
Target Start/End: Original strand, 29681948 - 29682168
Alignment:
Q  115 ttgttgtaatttgccttcaaattagtgttgctggaaactcataattgtgacacgatttt-gagtggcgcgtcacgattttggtggtagaatggatggttt 213  Q
    ||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||| ||||||||||||||||||||| ||| ||||||||||||||    
T  29681948 ttgttgtaatttgccttcaaattagtgttgctgaagactcataatcgtgacacgatttttgagtggcgcgtcacgattttgctggcagaatggatggttt 29682047  T
Q  214 ctgctgaaggcaaatcgtggcgcgattggtacaggcgtgacgcgatttgtggataaggttgtcgtacattgggtcgtacgcttcaaccgtggcgcgattt 313  Q
    ||||||||| ||||||||| ||||||||||  ||| ||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||| || || ||    
T  29682048 ctgctgaag-caaatcgtgacgcgattggtgaaggtgtgacgcgattggtggataaggttgtcgtaccttgggtcgtacacttcaaccgtgacgtga-tt 29682145  T
Q  314 ttggccggcgcagcgcgattttg 336  Q
    ||||  ||||| |||||||||||    
T  29682146 ttggatggcgcggcgcgattttg 29682168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 187 - 430
Target Start/End: Original strand, 46859924 - 46860164
Alignment:
Q  187 cgattttggtggtagaatggatggtttctgctgaaggcaaatcgtggcgcgattg-gtacaggcgtgacgcgatttgtggataaggttgtcgtacattgg 285  Q
    |||||||| ||| | ||||||||||||||||||||| |||||||||||||||||  || ||| |||||| |||||| |||||||||| || |||| ||||    
T  46859924 cgattttgctggcaaaatggatggtttctgctgaag-caaatcgtggcgcgattttgtgcag-cgtgacacgatttctggataaggtcgttgtaccttgg 46860021  T
Q  286 gtcgtacgct-tcaaccgtggcgcgatttttggccggcgcagcgcgattttgacagatttgtcacactatttaagcactctatgacccatttagtgaaat 384  Q
     |||||| |  | ||||||||||||||||| ||| ||||| || |||||||||||||| |||||||||||||||||||||||||| |||||| || |||     
T  46860022 atcgtacacaataaaccgtggcgcgatttt-ggctggcgcggcacgattttgacagatctgtcacactatttaagcactctatgatccattt-gttaaag 46860119  T
Q  385 aggcttggggaatctcatggaaaccaaaggagggaacttttagggt 430  Q
    | |||||| ||||||||||||||||||| ||| |||||||||||||    
T  46860120 a-gcttggtgaatctcatggaaaccaaatgagagaacttttagggt 46860164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 187 - 428
Target Start/End: Complemental strand, 41820238 - 41819997
Alignment:
Q  187 cgattttggtggtagaatggatggtttctgctgaaggcaaatcgtggcgcgattg-gtacaggcgtgacgcgatttgtggataaggttgtcgtacattgg 285  Q
    |||||||| ||| ||||||||||||||||||||||| ||||||||||| |||||  || |||  ||||| |||||| | |||||||  || |||| ||||    
T  41820238 cgattttgctggcagaatggatggtttctgctgaag-caaatcgtggcacgattttgtgcagt-gtgacacgatttctagataaggacgttgtaccttgg 41820141  T
Q  286 gtcgtacgct-tcaaccgtggcgcgatttttggccggcgcagcgcgattttgacagatttgtcacactatttaagcactctatgaccca-tttagtgaaa 383  Q
    ||||||| |  | ||||||||| ||||||| ||| |||||  |||||||||||||||| | |||||||||||||||||||||||||||| ||| ||||||    
T  41820140 gtcgtacacaatgaaccgtggcacgatttt-ggctggcgcgacgcgattttgacagatctatcacactatttaagcactctatgacccattttggtgaaa 41820042  T
Q  384 taggcttggggaatctcatggaaaccaaaggagggaacttttagg 428  Q
     | |||||| |||||||||||||||||||||||  ||||||||||    
T  41820041 aaagcttggtgaatctcatggaaaccaaaggagataacttttagg 41819997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 188 - 314
Target Start/End: Original strand, 9580944 - 9581070
Alignment:
Q  188 gattttggtggtagaatggatggtttctgctgaaggcaaatcgtggcgcgattg-gtacaggcgtgacgcgatttgtggataaggttgtcgtacattggg 286  Q
    ||||||| ||| ||||||||||||||||||||||| |||||||||||||||||  |  ||||||||||||||||| |||||||||||||||||| |||||    
T  9580944 gattttgctggcagaatggatggtttctgctgaag-caaatcgtggcgcgattttgggcaggcgtgacgcgatttatggataaggttgtcgtaccttggg 9581042  T
Q  287 tcgtacgcttcaaccgtggcgcgatttt 314  Q
    ||||||||||||||||||  ||||||||    
T  9581043 tcgtacgcttcaaccgtgatgcgatttt 9581070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 149 - 292
Target Start/End: Complemental strand, 22835547 - 22835404
Alignment:
Q  149 aaactcataattgtgacacgattttgagtggcgcgtcacgattttggtggtagaatggatggtttctgctgaaggcaaatcgtggcgcgattggtacagg 248  Q
    ||||||||||| ||||||||||| ||| ||| | | ||| |||||| ||| |||| | ||||||||||||||||| |||||||||||||||| || || |    
T  22835547 aaactcataatcgtgacacgattatgaatggtgtgacacaattttgttggcagaacgtatggtttctgctgaaggaaaatcgtggcgcgatttgtgcatg 22835448  T
Q  249 cgtgacgcgatttgtggataaggttgtcgtacattgggtcgtac 292  Q
    ||||||||||||| |||||||||||||||||| || ||||||||    
T  22835447 cgtgacgcgatttatggataaggttgtcgtaccttaggtcgtac 22835404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 187 - 303
Target Start/End: Original strand, 760507 - 760623
Alignment:
Q  187 cgattttggtggtagaatggatggtttctgctgaaggcaaatcgtggcgcgattg-gtacaggcgtgacgcgatttgtggataaggttgtcgtacattgg 285  Q
    |||||||| ||| |||||||||||||| |||||||| |||||||||  ||||||  || ||  |||||||||||||||||||||||||||||||| ||||    
T  760507 cgattttgctggcagaatggatggtttttgctgaag-caaatcgtgatgcgattttgtgcaaccgtgacgcgatttgtggataaggttgtcgtaccttgg 760605  T
Q  286 gtcgtacgcttcaaccgt 303  Q
    ||||||||||||||||||    
T  760606 gtcgtacgcttcaaccgt 760623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 149 - 314
Target Start/End: Complemental strand, 32744979 - 32744808
Alignment:
Q  149 aaactcataattgtgacacgattttgagtgg-----cgcgtcacgattttggtggtagaatggatggtttctgctgaaggcaaa-tcgtggcgcgattgg 242  Q
    ||||||||||| ||||||||||| |||||||     || | |||||||||| ||| |||| | |||||| |||||||||||||| ||||||| ||||| |    
T  32744979 aaactcataatcgtgacacgattatgagtggtgtgacgtgacacgattttgttggcagaacgtatggttcctgctgaaggcaaaatcgtggcacgatttg 32744880  T
Q  243 tacaggcgtgacgcgatttgtggataaggttgtcgtacattgggtcgtacgcttcaaccgtggcgcgatttt 314  Q
    | ||||||| ||||||||| |||||||||||||||||| || |||||||| | |||| |||| | |||||||    
T  32744879 tgcaggcgtaacgcgatttctggataaggttgtcgtacctttggtcgtactcatcaatcgtgacacgatttt 32744808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 187 - 314
Target Start/End: Complemental strand, 19684397 - 19684270
Alignment:
Q  187 cgattttggtggtagaatggatggtttctgctgaaggcaaatcgtggcgcgattg-gtacaggcgtgacgcgatttgtggataaggttgtcgtacattgg 285  Q
    |||||||| | | |||| ||||||||| |||||||| ||||||||||| |||||  |  |||||||||||| |||| || ||||||||||||||| ||||    
T  19684397 cgattttgcttgcagaacggatggtttttgctgaag-caaatcgtggcacgattttgggcaggcgtgacgcaatttatgaataaggttgtcgtaccttgg 19684299  T
Q  286 gtcgtacgcttcaaccgtggcgcgatttt 314  Q
    ||||||||||||||||||| | |||||||    
T  19684298 gtcgtacgcttcaaccgtgacacgatttt 19684270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 187 - 312
Target Start/End: Complemental strand, 37466826 - 37466700
Alignment:
Q  187 cgattttggtggtagaatggatggtttctgctgaaggcaaatcgtggcgcga-ttggtacaggcgtgacgcgatttgtggataaggttgtcgtacattgg 285  Q
    |||||||  ||| |||||||||||||||||||||||||||| || ||| ||| || |||| |||||| |||||||||||||||| || || |||| |||     
T  37466826 cgattttcatggcagaatggatggtttctgctgaaggcaaaccgcggcacgatttagtactggcgtggcgcgatttgtggataaagtcgttgtaccttga 37466727  T
Q  286 gtcgtacgcttcaaccgtggcgcgatt 312  Q
    |||||| | ||  ||||||||||||||    
T  37466726 gtcgtatgtttataccgtggcgcgatt 37466700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 348 - 430
Target Start/End: Original strand, 54593317 - 54593398
Alignment:
Q  348 acactatttaagcactctatgacccatttagtgaaataggcttggggaatctcatggaaaccaaaggagggaacttttagggt 430  Q
    ||||||| ||||||||| |||||||||||  |  || || ||||| |||||||||||||||||||||||||||||||||||||    
T  54593317 acactatgtaagcactccatgacccatttgttcgaaaag-cttggtgaatctcatggaaaccaaaggagggaacttttagggt 54593398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 387 - 432
Target Start/End: Original strand, 4569602 - 4569647
Alignment:
Q  387 gcttggggaatctcatggaaaccaaaggagggaacttttagggttt 432  Q
    |||||| |||||||||||||||||||||||||||||||||||||||    
T  4569602 gcttggtgaatctcatggaaaccaaaggagggaacttttagggttt 4569647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 387 - 432
Target Start/End: Complemental strand, 49199988 - 49199943
Alignment:
Q  387 gcttggggaatctcatggaaaccaaaggagggaacttttagggttt 432  Q
    |||||| |||||||||||||||||||||||||||||||||||||||    
T  49199988 gcttggtgaatctcatggaaaccaaaggagggaacttttagggttt 49199943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 329 - 432
Target Start/End: Original strand, 30235718 - 30235821
Alignment:
Q  329 cgattttgacagatttgtcacactatttaagcactctatgacccatttagtgaaataggcttggggaatctcatggaaaccaaaggagggaacttttagg 428  Q
    |||||||||||||| ||  ||||  ||||||||||| ||||||||||| ||    || |||||| ||||||||  ||||||||||||| |||||||||||    
T  30235718 cgattttgacagatctgaaacacattttaagcactccatgacccattttgttgggtaagcttggtgaatctcaatgaaaccaaaggagagaacttttagg 30235817  T
Q  429 gttt 432  Q
    ||||    
T  30235818 gttt 30235821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 200 - 293
Target Start/End: Original strand, 3323259 - 3323352
Alignment:
Q  200 agaatggatggtttctgctgaaggcaaatcgtggcgcgattg-gtacaggcgtgacgcgatttgtggataaggttgtcgtacattgggtcgtacg 293  Q
    |||||||||| ||| |||||||||||||| | |||||||||  |||| |||||| ||||||||||||||||||  || |||| ||||||||||||    
T  3323259 agaatggatgtttt-tgctgaaggcaaattgcggcgcgatttagtactggcgtggcgcgatttgtggataaggacgttgtaccttgggtcgtacg 3323352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 348 - 430
Target Start/End: Complemental strand, 35139269 - 35139188
Alignment:
Q  348 acactatttaagcactctatgacccatttagtgaaataggcttggggaatctcatggaaaccaaaggagggaacttttagggt 430  Q
    ||||||||||| |||||| |||||||||| || || || |||||| |||| |||||||||||||||||||| |||||| ||||    
T  35139269 acactatttaaacactctttgacccattt-gttaagtaagcttggtgaatttcatggaaaccaaaggagggtactttttgggt 35139188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 387 - 432
Target Start/End: Original strand, 28074268 - 28074313
Alignment:
Q  387 gcttggggaatctcatggaaaccaaaggagggaacttttagggttt 432  Q
    |||||| |||||||||||||||||||||||| ||||||||||||||    
T  28074268 gcttggtgaatctcatggaaaccaaaggaggaaacttttagggttt 28074313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 387 - 432
Target Start/End: Original strand, 34490864 - 34490909
Alignment:
Q  387 gcttggggaatctcatggaaaccaaaggagggaacttttagggttt 432  Q
    |||||| ||||||||||||||||||||||| |||||||||||||||    
T  34490864 gcttggtgaatctcatggaaaccaaaggagagaacttttagggttt 34490909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 387 - 432
Target Start/End: Original strand, 40912989 - 40913034
Alignment:
Q  387 gcttggggaatctcatggaaaccaaaggagggaacttttagggttt 432  Q
    |||||| ||||||||||||||||||||||||| |||||||||||||    
T  40912989 gcttggtgaatctcatggaaaccaaaggaggggacttttagggttt 40913034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 387 - 432
Target Start/End: Complemental strand, 43402307 - 43402262
Alignment:
Q  387 gcttggggaatctcatggaaaccaaaggagggaacttttagggttt 432  Q
    |||||| |||||| ||||||||||||||||||||||||||||||||    
T  43402307 gcttggtgaatcttatggaaaccaaaggagggaacttttagggttt 43402262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 387 - 432
Target Start/End: Complemental strand, 43404250 - 43404205
Alignment:
Q  387 gcttggggaatctcatggaaaccaaaggagggaacttttagggttt 432  Q
    |||||| ||||||||||||||||||| |||||||||||||||||||    
T  43404250 gcttggtgaatctcatggaaaccaaatgagggaacttttagggttt 43404205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 387 - 428
Target Start/End: Complemental strand, 5434396 - 5434355
Alignment:
Q  387 gcttggggaatctcatggaaaccaaaggagggaacttttagg 428  Q
    |||||| |||||||||||||| ||||||||||||||||||||    
T  5434396 gcttggtgaatctcatggaaatcaaaggagggaacttttagg 5434355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 387 - 432
Target Start/End: Complemental strand, 31340558 - 31340513
Alignment:
Q  387 gcttggggaatctcatggaaaccaaaggagggaacttttagggttt 432  Q
    |||||| |||||| |||||||||||||||| |||||||||||||||    
T  31340558 gcttggtgaatcttatggaaaccaaaggagagaacttttagggttt 31340513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 348 - 432
Target Start/End: Complemental strand, 55302520 - 55302437
Alignment:
Q  348 acactatttaagcactctatgacccatttagtgaaataggcttggggaatctcatggaaaccaaaggagggaacttttagggttt 432  Q
    ||||||| ||||||||| |||||||||||  ||   || |||||| |||| |||| |||||||||||||| ||||||||||||||    
T  55302520 acactatgtaagcactccatgacccatttgttggg-taagcttggtgaatttcattgaaaccaaaggaggaaacttttagggttt 55302437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 387 - 430
Target Start/End: Original strand, 36018501 - 36018544
Alignment:
Q  387 gcttggggaatctcatggaaaccaaaggagggaacttttagggt 430  Q
    |||||| ||||||||||||||||||||||| ||||||| |||||    
T  36018501 gcttggtgaatctcatggaaaccaaaggagagaactttcagggt 36018544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 354 - 432
Target Start/End: Original strand, 47303870 - 47303948
Alignment:
Q  354 tttaagcactctatgacccatttagtgaaataggcttggggaatctcatggaaaccaaaggagggaacttttagggttt 432  Q
    ||||||||||| | ||||||||| ||    || |||||| |||||||||||||| |||||||| ||||||||| |||||    
T  47303870 tttaagcactccacgacccattttgttgggtaagcttggtgaatctcatggaaatcaaaggagagaacttttatggttt 47303948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 432
Target Start/End: Complemental strand, 6096116 - 6096071
Alignment:
Q  387 gcttggggaatctcatggaaaccaaaggagggaacttttagggttt 432  Q
    |||||| |||||||||||||| || ||||| |||||||||||||||    
T  6096116 gcttggtgaatctcatggaaatcagaggagagaacttttagggttt 6096071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 426
Target Start/End: Complemental strand, 26324028 - 26323991
Alignment:
Q  389 ttggggaatctcatggaaaccaaaggagggaactttta 426  Q
    |||| |||||||||||||||||||||||| ||||||||    
T  26324028 ttggtgaatctcatggaaaccaaaggaggaaactttta 26323991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 389 - 429
Target Start/End: Complemental strand, 50433061 - 50433022
Alignment:
Q  389 ttggggaatctcatggaaaccaaaggagggaacttttaggg 429  Q
    ||||||| ||||||| |||||||||||||||||||||||||    
T  50433061 ttggggactctcatg-aaaccaaaggagggaacttttaggg 50433022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 139; Significance: 1e-72; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 116 - 314
Target Start/End: Original strand, 42361942 - 42362140
Alignment:
Q  116 tgttgtaatttgccttcaaattagtgttgctggaaactcataattgtgacacgattttgagtggcgcgtcacgattttggtggtagaatggatggtttct 215  Q
    |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  42361942 tgttgtaatttgccttcaaattagtgttgctgaaaactcataatcgtgacacgattttgagtggcgcgtcacgattttggtggcagaatggatggtttct 42362041  T
Q  216 gctgaaggcaaatcgtggcgcgattggtacaggcgtgacgcgatttgtggataaggttgtcgtacattgggtcgtacgcttcaaccgtggcgcgatttt 314  Q
    |||||||||||| | || || ||||||| ||||||||||||||||||||||||| |||||||||| ||||||||||| | |||| |||| | |||||||    
T  42362042 gctgaaggcaaaacatgacgagattggtgcaggcgtgacgcgatttgtggataacgttgtcgtaccttgggtcgtactcatcaatcgtgacacgatttt 42362140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 187 - 314
Target Start/End: Complemental strand, 11152099 - 11151972
Alignment:
Q  187 cgattttggtggtagaatggatggtttctgctgaaggcaaatcgtggcgcgattggtacaggcgtgacgcgatttgtggataaggttgtcgtacattggg 286  Q
    |||||||||||| |||||||||||||||||||||||||||||| ||| ||||||||| ||||||||||||| |||||||||||||||||||||| |||||    
T  11152099 cgattttggtggcagaatggatggtttctgctgaaggcaaatcatggtgcgattggtgcaggcgtgacgcggtttgtggataaggttgtcgtaccttggg 11152000  T
Q  287 tcgtacgcttcaaccgtggcgcgatttt 314  Q
    ||| |||||||||| |||||||||||||    
T  11151999 tcgcacgcttcaactgtggcgcgatttt 11151972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 188 - 432
Target Start/End: Complemental strand, 42288822 - 42288581
Alignment:
Q  188 gattttggtggtagaatggatggtttctgctgaaggcaaatcgtggcgcgattg-gtacaggcgtgacgcgatttgtggataaggttgtcgtacattggg 286  Q
    ||||||| ||||||||||||||||||||| ||||| |||||||||||| ||||  || ||  | |||| |||||| | ||||||||||| |||| |||||    
T  42288822 gattttgctggtagaatggatggtttctgttgaag-caaatcgtggcgtgattttgtgcat-catgacacgatttcttgataaggttgttgtaccttggg 42288725  T
Q  287 tcgtacgct-tcaaccgtggcgcgatttttggccggcgcagcgcgattttgacagatttgtcacactatttaagcactctatgacccatttagtgaaata 385  Q
    |||||| |  | ||||||||||||||||| ||| | |||  |||||||||||||||| ||||||||||||||||||||||||||||||||| || ||| |    
T  42288724 tcgtacacaatgaaccgtggcgcgatttt-ggctgacgcgacgcgattttgacagatctgtcacactatttaagcactctatgacccattt-gttaaa-a 42288628  T
Q  386 ggcttggggaatctcatggaaaccaaaggagggaacttttagggttt 432  Q
     ||| || ||||||||||||||||||| ||| |||||||||||||||    
T  42288627 agctaggtgaatctcatggaaaccaaatgagagaacttttagggttt 42288581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 166 - 314
Target Start/End: Complemental strand, 724272 - 724124
Alignment:
Q  166 acgattttgagtggcgcgtcacgattttggtggtagaatggatggtttctgctgaaggcaaatcgtggcgcgattg-gtacaggcgtgacgcgatttgtg 264  Q
    |||||||| ||||||| | | |||||||| ||||||||||||||||||||| ||||| |||||||||||||||||  ||  ||| ||||| |||||||||    
T  724272 acgattttcagtggcgtggcgcgattttgctggtagaatggatggtttctgttgaag-caaatcgtggcgcgattttgtgtaggtgtgacacgatttgtg 724174  T
Q  265 gataaggttgtcgtacattgggtcgtacgcttcaaccgtggcgcgatttt 314  Q
    |||||| ||||||||| |||||||||||||||||||||||||||||||||    
T  724173 gataagattgtcgtaccttgggtcgtacgcttcaaccgtggcgcgatttt 724124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 187 - 336
Target Start/End: Complemental strand, 34140278 - 34140130
Alignment:
Q  187 cgattttggtggtagaatggatggtttctgctgaaggcaaatcgtggcgcgattg-gtacaggcgtgacgcgatttgtggataaggttgtcgtacattgg 285  Q
    |||||||| | | ||||| ||||||||||||||||| |||||| |||||| |||  ||||||||| ||||||||||||||||||||||||||||| ||||    
T  34140278 cgattttgctagcagaattgatggtttctgctgaag-caaatcatggcgcaattttgtacaggcgcgacgcgatttgtggataaggttgtcgtaccttgg 34140180  T
Q  286 gtcgtacgcttcaaccgtggcgcgatttttggccggcgcagcgcgattttg 336  Q
    |||||||||||||||||| |||||||||||  | ||||| |||||||||||    
T  34140179 gtcgtacgcttcaaccgtagcgcgattttt-actggcgcggcgcgattttg 34140130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 157 - 308
Target Start/End: Complemental strand, 14634362 - 14634211
Alignment:
Q  157 aattgtgacacgattttgagtggcgcgtcacgattttggtggtagaatggatggtttctgctgaaggcaaatcgtggcgcgattg-gtacaggcgtgacg 255  Q
    ||||||| | ||||||| || |||| | | |||| ||| ||| | ||||||||||||||||||||| ||| |||||||||||||  || |||| ||| ||    
T  14634362 aattgtggcgcgattttcagaggcgtggcgcgatcttgctggcaaaatggatggtttctgctgaag-caagtcgtggcgcgattttgtgcaggtgtgtcg 14634264  T
Q  256 cgatttgtggataaggttgtcgtacattgggtcgtacgcttcaaccgtggcgc 308  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  14634263 cgatttgtggataaggttgtcgtaccttgggtcgtacgcttcaaccgtggcgc 14634211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 149 - 314
Target Start/End: Original strand, 11690123 - 11690288
Alignment:
Q  149 aaactcataattgtgacacgattttgagtggcgcgtcacgattttggtggtagaatggatggtttctgctgaaggcaaatcgtggcgcgattggtacagg 248  Q
    |||||||||||  |||||||||| ||| ||||  | ||||||||||  || | || | ||||||||||  ||||| ||||||||| | |||| || ||||    
T  11690123 aaactcataatcatgacacgattatgaatggcatgacacgattttgtcggcataacgtatggtttctgtcgaaggaaaatcgtggtgggatttgtgcagg 11690222  T
Q  249 cgtgacgcgatttgtggataaggttgtcgtacattgggtcgtacgcttcaaccgtggcgcgatttt 314  Q
    |||||| |||||| | |||||||||||||||| |||| |||||| | |||| |||| | |||||||    
T  11690223 cgtgacacgatttattgataaggttgtcgtaccttggatcgtactcatcaatcgtgacacgatttt 11690288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 354 - 432
Target Start/End: Original strand, 7450919 - 7450997
Alignment:
Q  354 tttaagcactctatgacccatttagtgaaataggcttggggaatctcatggaaaccaaaggagggaacttttagggttt 432  Q
    ||||||||||| ||||||||||| ||    || |||||| ||||||||||||||| |||||||||||||||||||||||    
T  7450919 tttaagcactccatgacccattttgttgggtaagcttggtgaatctcatggaaacaaaaggagggaacttttagggttt 7450997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 387 - 432
Target Start/End: Complemental strand, 1632249 - 1632204
Alignment:
Q  387 gcttggggaatctcatggaaaccaaaggagggaacttttagggttt 432  Q
    |||||| |||||||||||||||||||||||||||||||||||||||    
T  1632249 gcttggtgaatctcatggaaaccaaaggagggaacttttagggttt 1632204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 348 - 432
Target Start/End: Complemental strand, 35447439 - 35447356
Alignment:
Q  348 acactatttaagcactctatgacccatttagtgaaataggcttggggaatctcatggaaaccaaaggagggaacttttagggttt 432  Q
    ||||||| ||||||||| |||||||||||  ||   || |||||| ||||||||||||||||||||||| |||||||||||||||    
T  35447439 acactatgtaagcactccatgacccatttgttggg-taagcttggtgaatctcatggaaaccaaaggagagaacttttagggttt 35447356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 348 - 432
Target Start/End: Original strand, 45726543 - 45726626
Alignment:
Q  348 acactatttaagcactctatgacccatttagtgaaataggcttggggaatctcatggaaaccaaaggagggaacttttagggttt 432  Q
    ||||||| ||||||||| |||||||||||  ||   || |||||| ||||||||||||||||||| |||||||||||||||||||    
T  45726543 acactatgtaagcactccatgacccatttgttggg-taagcttggtgaatctcatggaaaccaaatgagggaacttttagggttt 45726626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 394 - 432
Target Start/End: Original strand, 17450249 - 17450287
Alignment:
Q  394 gaatctcatggaaaccaaaggagggaacttttagggttt 432  Q
    |||||||||||||||||||||||||||||||||||||||    
T  17450249 gaatctcatggaaaccaaaggagggaacttttagggttt 17450287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 187 - 240
Target Start/End: Complemental strand, 14202882 - 14202830
Alignment:
Q  187 cgattttggtggtagaatggatggtttctgctgaaggcaaatcgtggcgcgatt 240  Q
    |||||||| ||| |||||||||||||||||||||| ||||||||||||||||||    
T  14202882 cgattttgctggcagaatggatggtttctgctgaa-gcaaatcgtggcgcgatt 14202830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 233
Target Start/End: Complemental strand, 14635264 - 14635189
Alignment:
Q  157 aattgtgacacgattttgagtggcgcgtcacgattttggtggtagaatggatggtttctgctgaaggcaaatcgtgg 233  Q
    ||||||| | ||||||| || |||| | |||||||||| ||| |||||||||||||| ||||||| |||||||||||    
T  14635264 aattgtggcgcgattttcagaggcgtggcacgattttgctggcagaatggatggtttatgctgaa-gcaaatcgtgg 14635189  T

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Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 286 - 314
Target Start/End: Complemental strand, 14202815 - 14202787
Alignment:
Q  286 gtcgtacgcttcaaccgtggcgcgatttt 314  Q
    |||||||||||||||||||||||||||||    
T  14202815 gtcgtacgcttcaaccgtggcgcgatttt 14202787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 387 - 427
Target Start/End: Original strand, 33647819 - 33647859
Alignment:
Q  387 gcttggggaatctcatggaaaccaaaggagggaacttttag 427  Q
    |||||| |||| |||||||||||||||||| ||||||||||    
T  33647819 gcttggtgaatttcatggaaaccaaaggagagaacttttag 33647859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 125; Significance: 3e-64; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 149 - 432
Target Start/End: Original strand, 46702915 - 46703197
Alignment:
Q  149 aaactcataattgtgacacgattttgagtggcgcgtcacgattttggtggtagaatggatggtttctgctgaaggcaaatcgtggcgcgattggtacagg 248  Q
    ||||||||||| ||||||||||| ||||||| | | | |||||||| | | |||| |  |||||||||||||||||||||||||||||||||||| ||||    
T  46702915 aaactcataatcgtgacacgattatgagtggtgtgacgcgattttgtttgcagaacgtgtggtttctgctgaaggcaaatcgtggcgcgattggtgcagg 46703014  T
Q  249 cgtgacgcgatttgtggataaggttgtcgtacattgggtcgtacgc-ttcaaccgtggcgcgatttttggccggcgcagcgcgattttgacagatttgtc 347  Q
    |||||||||||||||||||||||| || |||| ||||||||||| |  | ||| ||||||||| || |||| |||||| ||||||||||| |||| | ||    
T  46703015 cgtgacgcgatttgtggataaggtcgttgtaccttgggtcgtacacaatgaactgtggcgcga-ttctggctggcgcaacgcgattttgatagatctatc 46703113  T
Q  348 acactatttaagcactctatgacccatttagtgaaataggcttggggaatctcatggaaaccaaaggagggaacttttagggttt 432  Q
    ||||||||||| |||||||| ||||||||  || |  |||||||| ||||||||||||||||||||||| |||||||||||||||    
T  46703114 acactatttaatcactctataacccatttgctg-aggaggcttggtgaatctcatggaaaccaaaggagagaacttttagggttt 46703197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 187 - 430
Target Start/End: Original strand, 41963869 - 41964110
Alignment:
Q  187 cgattttggtggtagaatggatggtttctgctgaaggcaaatcgtggcgcgattg-gtacaggcgtgacgcgatttgtggataaggttgtcgtacattgg 285  Q
    |||||||| ||| ||||||||||||||||| ||||| |||||||||||||||||  || ||  |||||| ||||||||||||||||| || |||| ||||    
T  41963869 cgattttgctggcagaatggatggtttctgttgaag-caaatcgtggcgcgattttgtgcac-cgtgacacgatttgtggataaggtcgttgtaccttgg 41963966  T
Q  286 gtcgtacgct-tcaaccgtggcgcgatttttggccggcgcagcgcgattttgacagatttgtcacactatttaagcactctatgacccatttagtgaaat 384  Q
    ||||||| |  | ||||||||||||||||  ||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |     
T  41963967 gtcgtacacaatgaaccgtggcgcgatttc-ggctggcgcggcgtgattttgacagatttgtcacactatttaagcactctatgacccatttggtgaga- 41964064  T
Q  385 aggcttggggaatctcatggaaaccaaaggagggaacttttagggt 430  Q
    | | |||| |||||||||||||| ||||||||||||||||||||||    
T  41964065 aagtttggtgaatctcatggaaatcaaaggagggaacttttagggt 41964110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 187 - 428
Target Start/End: Original strand, 378832 - 379070
Alignment:
Q  187 cgattttggtggtagaatggatggtttctgctgaaggcaaatcgtggcgcgattg-gtacaggcgtgacgcgatttgtggataaggttgtcgtacattgg 285  Q
    |||||||  ||| |||||||||||||||| |||||| ||||| ||| |||||||  || ||| |||||| |||||||||||||||| ||| |||  ||||    
T  378832 cgattttattggcagaatggatggtttctactgaag-caaattgtgacgcgattttgtgcag-cgtgacacgatttgtggataaggctgttgtatcttgg 378929  T
Q  286 gtcgtacgct-tcaaccgtggcgcgatttttggccggcgcagcgcgattttgacagatttgtcacactatttaagcactctatgacccatttagtgaaat 384  Q
    ||||||| |  | ||||||||| ||||||| ||| ||||| ||||||||||||||||| |||||||||||||||||| |||||||||||||| || |||     
T  378930 gtcgtacacaatgaaccgtggcacgatttt-ggctggcgcggcgcgattttgacagatctgtcacactatttaagcaatctatgacccattt-gttaaag 379027  T
Q  385 aggcttggggaatctcatggaaaccaaaggagggaacttttagg 428  Q
    | |||||| ||||||| ||||||||||||||| |||||||||||    
T  379028 a-gcttggtgaatctcgtggaaaccaaaggagagaacttttagg 379070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 187 - 432
Target Start/End: Original strand, 12072845 - 12073089
Alignment:
Q  187 cgattttggtggtagaatggatggtttctgctgaaggcaaatcgtggcgcgattg-gtacaggcgtgacgcgatttgtggataaggttgtcgtacattgg 285  Q
    |||||||| ||| ||||||||||||||||||||||| ||||| || || |||||  || ||| |||||| |||||| | |||||||   | |||||||||    
T  12072845 cgattttgctggcagaatggatggtttctgctgaag-caaattgttgcacgattttgtgcag-cgtgacacgatttctagataaggccattgtacattgg 12072942  T
Q  286 gtcgtacgct-tcaaccgtggcgcgatttttggccggcgcagcgcgattttgacagatttgtcacactatttaagcactctatgacccatttagtgaaat 384  Q
    | | ||| |  | |||||||| | |||||| ||| |||||  |||||||||||||||| ||||||||| |||||||||| ||||||||||||  | |||     
T  12072943 gacatacacaatgaaccgtggtgtgatttt-ggctggcgcgacgcgattttgacagatctgtcacactgtttaagcactttatgacccatttgttaaaaa 12073041  T
Q  385 aggcttggggaatctcatggaaaccaaaggagggaacttttagggttt 432  Q
    | |||||| |||||||||||||||||||||| ||||||||||||||||    
T  12073042 aagcttggtgaatctcatggaaaccaaaggatggaacttttagggttt 12073089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 167 - 296
Target Start/End: Original strand, 5870027 - 5870156
Alignment:
Q  167 cgattttgagtggcgcgtcacgattttggtggtagaatggatggtttctgctgaaggcaaatcgtggcgcgattg-gtacaggcgtgacgcgatttgtgg 265  Q
    ||||||| || |||| | |||||||||| ||| ||||||||||||||||||| ||| |||||||||| ||||||  || |||||||||| ||||||||||    
T  5870027 cgattttcagaggcgtggcacgattttgctggcagaatggatggtttctgcttaag-caaatcgtggtgcgattttgtgcaggcgtgacacgatttgtgg 5870125  T
Q  266 ataaggttgtcgtacattgggtcgtacgctt 296  Q
    ||||| |||||| || |||||||||||||||    
T  5870126 ataagtttgtcgaaccttgggtcgtacgctt 5870156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 329 - 432
Target Start/End: Original strand, 8653193 - 8653296
Alignment:
Q  329 cgattttgacagatttgtcacactatttaagcactctatgacccatttagtgaaataggcttggggaatctcatggaaaccaaaggagggaacttttagg 428  Q
    |||||||||||||| ||  ||||  ||||||||||| ||||||||||| || |  || |||||| ||||||||||||||||||||||| |||||||||||    
T  8653193 cgattttgacagatctgaaacacgttttaagcactccatgacccattttgttaggtaagcttggtgaatctcatggaaaccaaaggagagaacttttagg 8653292  T
Q  429 gttt 432  Q
    ||||    
T  8653293 gttt 8653296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 329 - 432
Target Start/End: Original strand, 8665000 - 8665103
Alignment:
Q  329 cgattttgacagatttgtcacactatttaagcactctatgacccatttagtgaaataggcttggggaatctcatggaaaccaaaggagggaacttttagg 428  Q
    |||||||||||||| ||  ||||  ||||||||||| ||||||||||| || |  || |||||| ||||||||||||||||||||||| |||||||||||    
T  8665000 cgattttgacagatctgaaacacgttttaagcactccatgacccattttgttaggtaagcttggtgaatctcatggaaaccaaaggagagaacttttagg 8665099  T
Q  429 gttt 432  Q
    ||||    
T  8665100 gttt 8665103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 149 - 280
Target Start/End: Complemental strand, 47038949 - 47038817
Alignment:
Q  149 aaactcataattgtgacacgattttgagtggcgcgtcacgattttggtggtagaatggatggtttctgctgaaggc-aaatcgtggcgcgattggtacag 247  Q
    |||||||||||  |||||||||| ||||||||  | ||| |||||| ||| |||| | |||||| ||||||||||| |||||||||||||||| || |||    
T  47038949 aaactcataatcatgacacgattatgagtggcatgacacaattttgttggcagaacgtatggttcctgctgaaggcaaaatcgtggcgcgatttgtgcag 47038850  T
Q  248 gcgtgacgcgatttgtggataaggttgtcgtac 280  Q
    |||||||  ||||| ||| ||||| ||||||||    
T  47038849 gcgtgacaagatttctgggtaaggctgtcgtac 47038817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 387 - 432
Target Start/End: Complemental strand, 50674363 - 50674318
Alignment:
Q  387 gcttggggaatctcatggaaaccaaaggagggaacttttagggttt 432  Q
    |||||| |||||||||||||||||||||||||||||||||||||||    
T  50674363 gcttggtgaatctcatggaaaccaaaggagggaacttttagggttt 50674318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 348 - 432
Target Start/End: Original strand, 26363878 - 26363961
Alignment:
Q  348 acactatttaagcactctatgacccatttagtgaaataggcttggggaatctcatggaaaccaaaggagggaacttttagggttt 432  Q
    ||||||| ||||||||| |||||||||||  ||   || |||||| |||||||||||||||||| ||||||||||||||||||||    
T  26363878 acactatgtaagcactccatgacccatttgttggg-taagcttggtgaatctcatggaaaccaagggagggaacttttagggttt 26363961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 348 - 432
Target Start/End: Complemental strand, 27417506 - 27417423
Alignment:
Q  348 acactatttaagcactctatgacccatttagtgaaataggcttggggaatctcatggaaaccaaaggagggaacttttagggttt 432  Q
    ||||||| ||||||||| |||||||||||  ||   || |||||| |||||||||| ||||||||||||||||||||||||||||    
T  27417506 acactatataagcactccatgacccatttgttggg-taagcttggtgaatctcatgaaaaccaaaggagggaacttttagggttt 27417423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 356 - 432
Target Start/End: Complemental strand, 50263245 - 50263170
Alignment:
Q  356 taagcactctatgacccatttagtgaaataggcttggggaatctcatggaaaccaaaggagggaacttttagggttt 432  Q
    |||||||||| ||||||||||  ||||| ||  |||| |||||||||| ||||||||||||||||||||||||||||    
T  50263245 taagcactctttgacccatttgttgaaaaagt-ttggtgaatctcatgaaaaccaaaggagggaacttttagggttt 50263170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 394 - 432
Target Start/End: Original strand, 54882678 - 54882716
Alignment:
Q  394 gaatctcatggaaaccaaaggagggaacttttagggttt 432  Q
    |||||||||||||||||||||||||||||||||||||||    
T  54882678 gaatctcatggaaaccaaaggagggaacttttagggttt 54882716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 395 - 432
Target Start/End: Original strand, 6655615 - 6655652
Alignment:
Q  395 aatctcatggaaaccaaaggagggaacttttagggttt 432  Q
    ||||||||||||||||||||||||||||||||||||||    
T  6655615 aatctcatggaaaccaaaggagggaacttttagggttt 6655652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 331 - 432
Target Start/End: Original strand, 10071480 - 10071581
Alignment:
Q  331 attttgacagatttgtcacactatttaagcactctatgacccatttagtgaaataggcttggggaatctcatggaaaccaaaggagggaacttttagggt 430  Q
    |||||||||||| ||  ||||  ||||||||||| ||||||||||| ||    ||  ||||| |||||||||||||| |||||||||||||||||| |||    
T  10071480 attttgacagatctgaaacacgttttaagcactccatgacccattttgttgggtaatcttggtgaatctcatggaaatcaaaggagggaacttttaaggt 10071579  T
Q  431 tt 432  Q
    ||    
T  10071580 tt 10071581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 387 - 432
Target Start/End: Complemental strand, 46570063 - 46570018
Alignment:
Q  387 gcttggggaatctcatggaaaccaaaggagggaacttttagggttt 432  Q
    |||||| ||||||||||||||||||||||||||| |||||||||||    
T  46570063 gcttggtgaatctcatggaaaccaaaggagggaaattttagggttt 46570018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 348 - 430
Target Start/End: Complemental strand, 22883308 - 22883227
Alignment:
Q  348 acactatttaagcactctatgacccatttagtgaaataggcttggggaatctcatggaaaccaaaggagggaacttttagggt 430  Q
    |||||||||||||||||  | ||||||||  |||  || |||||| ||||||||||||||||||| ||||||| |||||||||    
T  22883308 acactatttaagcactccttaacccatttgttgag-taagcttggtgaatctcatggaaaccaaatgagggaaattttagggt 22883227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 348 - 430
Target Start/End: Complemental strand, 22934972 - 22934891
Alignment:
Q  348 acactatttaagcactctatgacccatttagtgaaataggcttggggaatctcatggaaaccaaaggagggaacttttagggt 430  Q
    |||||||||||||||||  | ||||||||  |||  || |||||| ||||||||||||||||||| ||||||| |||||||||    
T  22934972 acactatttaagcactccttaacccatttgttgag-taagcttggtgaatctcatggaaaccaaatgagggaaattttagggt 22934891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 387 - 432
Target Start/End: Original strand, 2209359 - 2209404
Alignment:
Q  387 gcttggggaatctcatggaaaccaaaggagggaacttttagggttt 432  Q
    |||||| |||||||||||||| |||| |||||||||||||||||||    
T  2209359 gcttggtgaatctcatggaaagcaaatgagggaacttttagggttt 2209404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 387 - 432
Target Start/End: Original strand, 40630635 - 40630680
Alignment:
Q  387 gcttggggaatctcatggaaaccaaaggagggaacttttagggttt 432  Q
    |||||| |||||||||||||||||||||| | ||||||||||||||    
T  40630635 gcttggtgaatctcatggaaaccaaaggatgaaacttttagggttt 40630680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 387 - 432
Target Start/End: Complemental strand, 55085883 - 55085838
Alignment:
Q  387 gcttggggaatctcatggaaaccaaaggagggaacttttagggttt 432  Q
    |||||| ||||||||  |||||||||||||||||||||||||||||    
T  55085883 gcttggtgaatctcaatgaaaccaaaggagggaacttttagggttt 55085838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 394 - 430
Target Start/End: Complemental strand, 38811589 - 38811553
Alignment:
Q  394 gaatctcatggaaaccaaaggagggaacttttagggt 430  Q
    ||||||||||||||| |||||||||||||||||||||    
T  38811589 gaatctcatggaaactaaaggagggaacttttagggt 38811553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 387 - 430
Target Start/End: Complemental strand, 47515019 - 47514976
Alignment:
Q  387 gcttggggaatctcatggaaaccaaaggagggaacttttagggt 430  Q
    ||||| |||||||||||||||||||| ||| |||||||||||||    
T  47515019 gcttgtggaatctcatggaaaccaaatgagtgaacttttagggt 47514976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 264 - 304
Target Start/End: Original strand, 24968857 - 24968898
Alignment:
Q  264 ggataaggttg-tcgtacattgggtcgtacgcttcaaccgtg 304  Q
    ||||||||||| ||||||||||||||||||||||||| ||||    
T  24968857 ggataaggttggtcgtacattgggtcgtacgcttcaatcgtg 24968898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 394 - 426
Target Start/End: Complemental strand, 35370848 - 35370816
Alignment:
Q  394 gaatctcatggaaaccaaaggagggaactttta 426  Q
    |||||||||||||| ||||||||||||||||||    
T  35370848 gaatctcatggaaatcaaaggagggaactttta 35370816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 118; Significance: 5e-60; HSPs: 31)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 187 - 430
Target Start/End: Original strand, 3258448 - 3258689
Alignment:
Q  187 cgattttggtggtagaatggatggtttctgctgaaggcaaatcgtggcgcgattg-gtacaggcgtgacgcgatttgtggataaggttgtcgtacattgg 285  Q
    |||||||| ||| ||||||||||||||||||||||| |||||||||||||||||  || ||  |||||||||||||||||||||||| || |||| ||||    
T  3258448 cgattttgctggcagaatggatggtttctgctgaag-caaatcgtggcgcgattttgtgcac-cgtgacgcgatttgtggataaggtcgttgtaccttgg 3258545  T
Q  286 gtcgtacgct-tcaaccgtggcgcgatttttggccggcgcagcgcgattttgacagatttgtcacactatttaagcactctatgacccatttagtgaaat 384  Q
    ||||||| |  | ||||||||||||||||| | | ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||     
T  3258546 gtcgtacacaatgaaccgtggcgcgattttag-ctggcgcggcgcgattttgacagatctgtcacactatttaagcactctatgacccatttggtgaaa- 3258643  T
Q  385 aggcttggggaatctcatggaaaccaaaggagggaacttttagggt 430  Q
    |  ||||| ||||||||||||||||| |||||||||||||||||||    
T  3258644 aaacttggtgaatctcatggaaaccagaggagggaacttttagggt 3258689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 19 - 115
Target Start/End: Complemental strand, 26632586 - 26632490
Alignment:
Q  19 aaccgttccctaccttcgaatgatctttcttctggaacatgacagtctgatatatgtacagtttttcttctgatataaaaaatgaatatatagatat 115  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||    
T  26632586 aaccgttccctaccttcgactgatctttcttctggaacatgacagtctgatatatgtacagtttttcttttgatataaaaattgaatatatagatat 26632490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 190 - 314
Target Start/End: Complemental strand, 41649514 - 41649390
Alignment:
Q  190 ttttggtggtagaatggatggtttctgctgaaggcaaatcgtggcgcgattg-gtacaggcgtgacgcgatttgtggataaggttgtcgtacattgggtc 288  Q
    ||||| ||| ||||||||||||||||||| ||| ||||||||||||| |||  || |||||||||||||||||||||||||||||||||||| |||||||    
T  41649514 ttttgctggcagaatggatggtttctgcttaag-caaatcgtggcgcaattttgtgcaggcgtgacgcgatttgtggataaggttgtcgtaccttgggtc 41649416  T
Q  289 gtacgcttcaaccgtggcgcgatttt 314  Q
    ||||||||||||||||||||||||||    
T  41649415 gtacgcttcaaccgtggcgcgatttt 41649390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 157 - 314
Target Start/End: Original strand, 25615487 - 25615644
Alignment:
Q  157 aattgtgacacgattttgagtggcgcgtcacgattttggtggtagaatggatggtttctgctgaaggcaaatcgtggcgcgattg-gtacaggcgtgacg 255  Q
    ||||||| | ||||||| || |||| | | |||||||| ||| ||||||||||||||||||||||| |||||||||||||||||  || ||| |||||      
T  25615487 aattgtggcgcgattttcagaggcgtggcgcgattttgctggcagaatggatggtttctgctgaag-caaatcgtggcgcgattttgtgcagccgtgata 25615585  T
Q  256 cgatttgtggataaggttgtcgtacattgggtcgtacgcttcaaccgtggcgcgatttt 314  Q
    |||||||| |||||||||||||||| ||||||||||||||||||||||| |||||||||    
T  25615586 cgatttgtcgataaggttgtcgtaccttgggtcgtacgcttcaaccgtgacgcgatttt 25615644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 187 - 314
Target Start/End: Complemental strand, 38671729 - 38671602
Alignment:
Q  187 cgattttggtggtagaatggatggtttctgctgaaggcaaatcgtggcgcgattg-gtacaggcgtgacgcgatttgtggataaggttgtcgtacattgg 285  Q
    |||||||| ||| |||||||||||||| | || ||| |||||||||||||||||  || |||||||||||| ||||||||||||||||||||| | ||||    
T  38671729 cgattttgctggcagaatggatggtttttactaaag-caaatcgtggcgcgattttgtgcaggcgtgacgcaatttgtggataaggttgtcgtgccttgg 38671631  T
Q  286 gtcgtacgcttcaaccgtggcgcgatttt 314  Q
    |||||||||||||||||||| ||||||||    
T  38671630 gtcgtacgcttcaaccgtggtgcgatttt 38671602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 25 - 115
Target Start/End: Complemental strand, 26617060 - 26616965
Alignment:
Q  25 tccctaccttcgaatgatctttcttctggaacatgacagtctgatatat-----gtacagtttttcttctgatataaaaaatgaatatatagatat 115  Q
    ||||||||||||||||| |||||||||||| ||||||||||||||||||     |||||||||||||| |||||||||||||||||||||||||||    
T  26617060 tccctaccttcgaatgaactttcttctggaccatgacagtctgatatatctctagtacagtttttcttttgatataaaaaatgaatatatagatat 26616965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 19 - 115
Target Start/End: Complemental strand, 26640460 - 26640359
Alignment:
Q  19 aaccgttccctaccttcgaatgatctttcttctggaacatgacagtctgatatat-----gtacagtttttcttctgatataaaaaatgaatatatagat 113  Q
    |||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||     |||||||||||||| | |||| ||||||||||||||||||    
T  26640460 aacccttccctaccttggaatgatctttcttctggaccatgacagtctgatatatctctagtacagtttttcttttcatatcaaaaatgaatatatagat 26640361  T
Q  114 at 115  Q
    ||    
T  26640360 at 26640359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 187 - 291
Target Start/End: Original strand, 31518465 - 31518570
Alignment:
Q  187 cgattttggtggtagaatggatggtttctgctgaaggcaaatcgtggcgcgattg-gtacaggcgtgacgcgatttgtggataaggttgtcgtacattgg 285  Q
    |||||||  |||||||||||||||||| ||||||||| ||||||||| ||||||  || ||||||||| ||||||| |||||||||||||||||| ||||    
T  31518465 cgattttcctggtagaatggatggtttatgctgaaggtaaatcgtggtgcgattttgtgcaggcgtgatgcgatttctggataaggttgtcgtaccttgg 31518564  T
Q  286 gtcgta 291  Q
    ||||||    
T  31518565 gtcgta 31518570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 19 - 110
Target Start/End: Original strand, 26652373 - 26652469
Alignment:
Q  19 aaccgttccctaccttcgaatgatctttcttctggaacatgacagtctgatatat-----gtacagtttttcttctgatataaaaaatgaatatata 110  Q
    |||| |||||||||||||||||| |||||||||||| ||||||| ||||||||||     |||||||||||||| ||||||||||||||||||||||    
T  26652373 aacccttccctaccttcgaatgaactttcttctggaccatgacaatctgatatatatctagtacagtttttcttttgatataaaaaatgaatatata 26652469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 196 - 334
Target Start/End: Original strand, 9184746 - 9184886
Alignment:
Q  196 tggtagaatggatggtttctgctgaaggcaaatcgtggcgcgattggtacaggcgtgacgcgatttgtggataag--gttgtcgtacattgggtcgtacg 293  Q
    |||||||||||||| ||| |||||||||||||||||||||||||| |||| |||||| |||||||||||||||||  |  || | || ||||||||||||    
T  9184746 tggtagaatggatgtttt-tgctgaaggcaaatcgtggcgcgatttgtactggcgtggcgcgatttgtggataaggagacgttgaaccttgggtcgtacg 9184844  T
Q  294 c-ttcaaccgtggcgcgatttttggccggcgcagcgcgattt 334  Q
    | || || |||||| |||||||| || ||||| |||||||||    
T  9184845 ctttaaatcgtggcacgatttttagcaggcgcggcgcgattt 9184886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 348 - 432
Target Start/End: Complemental strand, 32358391 - 32358308
Alignment:
Q  348 acactatttaagcactctatgacccatttagtgaaataggcttggggaatctcatggaaaccaaaggagggaacttttagggttt 432  Q
    ||||||| ||||||||| |||||||||||  ||||| || ||||| |||||||||||||||||||||||||||||||||||||||    
T  32358391 acactatgtaagcactccatgacccatttgttgaaaaag-cttggtgaatctcatggaaaccaaaggagggaacttttagggttt 32358308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 329 - 432
Target Start/End: Complemental strand, 4512963 - 4512861
Alignment:
Q  329 cgattttgacagatttgtcacactatttaagcactctatgacccatttagtgaaataggcttggggaatctcatggaaaccaaaggagggaacttttagg 428  Q
    |||||||||||||| ||  ||||  ||||||||||| |||||||||||| ||   || |||||| |||||||||||||||||||||||||||||||||||    
T  4512963 cgattttgacagatctgaaacacgttttaagcactccatgacccatttaatggg-taagcttggtgaatctcatggaaaccaaaggagggaacttttagg 4512865  T
Q  429 gttt 432  Q
    ||||    
T  4512864 gttt 4512861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 210 - 334
Target Start/End: Original strand, 9189593 - 9189718
Alignment:
Q  210 gtttctgctgaaggcaaatcgtggcgcgattggtacaggcgtgacgcgatttgtggataaggttgtcgtacattgggtcgtacgc-ttcaaccgtggcgc 308  Q
    |||| |||||||||||||||| ||||||||| |||| |||||| || ||||| |||||||||  || |||| ||||||||||||| || || |||||| |    
T  9189593 gtttttgctgaaggcaaatcgcggcgcgatttgtactggcgtggcgtgatttttggataaggacgttgtaccttgggtcgtacgctttaaatcgtggcac 9189692  T
Q  309 gatttttggccggcgcagcgcgattt 334  Q
    ||||||| || ||||| |||||||||    
T  9189693 gatttttagcaggcgcggcgcgattt 9189718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 329 - 432
Target Start/End: Original strand, 6431565 - 6431667
Alignment:
Q  329 cgattttgacagatttgtcacactatttaagcactctatgacccatttagtgaaataggcttggggaatctcatggaaaccaaaggagggaacttttagg 428  Q
    |||||||||||||| ||  ||||  ||||||| ||| |||||||||||| ||   || |||||| ||||||||| |||||||||||||||||||||||||    
T  6431565 cgattttgacagatctgaaacacgttttaagcgctccatgacccatttattggg-taagcttggtgaatctcatagaaaccaaaggagggaacttttagg 6431663  T
Q  429 gttt 432  Q
    ||||    
T  6431664 gttt 6431667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 329 - 432
Target Start/End: Original strand, 30814359 - 30814461
Alignment:
Q  329 cgattttgacagatttgtcacactatttaagcactctatgacccatttagtgaaataggcttggggaatctcatggaaaccaaaggagggaacttttagg 428  Q
    |||||||||||||| ||  ||||  |||||||| ||| ||||||||||  ||   || |||||| |||||||||||||||||||||||||||||||||||    
T  30814359 cgattttgacagatctgaaacacgttttaagcattctttgacccatttgttggg-taagcttggtgaatctcatggaaaccaaaggagggaacttttagg 30814457  T
Q  429 gttt 432  Q
    ||||    
T  30814458 gttt 30814461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 387 - 432
Target Start/End: Original strand, 29608392 - 29608437
Alignment:
Q  387 gcttggggaatctcatggaaaccaaaggagggaacttttagggttt 432  Q
    |||||| |||||||||||||||||||||||||||||||||||||||    
T  29608392 gcttggtgaatctcatggaaaccaaaggagggaacttttagggttt 29608437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 387 - 432
Target Start/End: Complemental strand, 48599841 - 48599796
Alignment:
Q  387 gcttggggaatctcatggaaaccaaaggagggaacttttagggttt 432  Q
    |||||| |||||||||||||||||||||||||||||||||||||||    
T  48599841 gcttggtgaatctcatggaaaccaaaggagggaacttttagggttt 48599796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 333 - 432
Target Start/End: Complemental strand, 4509267 - 4509169
Alignment:
Q  333 tttgacagatttgtcacactatttaagcactctatgacccatttagtgaaataggcttggggaatctcatggaaaccaaaggagggaacttttagggttt 432  Q
    |||||||||| ||  ||||  |||||||||||||||||||||||  ||   || ||||||  ||||||||||||||||||||| ||||||||||||||||    
T  4509267 tttgacagatctgaaacacgttttaagcactctatgacccatttgttggg-taagcttggttaatctcatggaaaccaaaggatggaacttttagggttt 4509169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 333 - 432
Target Start/End: Complemental strand, 4511109 - 4511011
Alignment:
Q  333 tttgacagatttgtcacactatttaagcactctatgacccatttagtgaaataggcttggggaatctcatggaaaccaaaggagggaacttttagggttt 432  Q
    |||||||||| ||  ||||  |||||||||||||||||||||||  ||   || ||||||  ||||||||||||||||||||| ||||||||||||||||    
T  4511109 tttgacagatctgaaacacgttttaagcactctatgacccatttgttggg-taagcttggttaatctcatggaaaccaaaggatggaacttttagggttt 4511011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 215 - 312
Target Start/End: Original strand, 23402605 - 23402703
Alignment:
Q  215 tgctgaaggcaaatcgtggcgcgattg-gtacaggcgtgacgcgatttgtggataaggttgtcgtacattgggtcgtacgcttcaaccgtggcgcgatt 312  Q
    |||||||||||||||| ||| | |||  |||| |||||| ||| |||||||||||||||||| |||| |||||||||||| ||  | ||||||||||||    
T  23402605 tgctgaaggcaaatcgcggcacaatttagtactggcgtggcgcaatttgtggataaggttgttgtaccttgggtcgtacgtttatatcgtggcgcgatt 23402703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 73 - 115
Target Start/End: Complemental strand, 26609797 - 26609755
Alignment:
Q  73 tgtacagtttttcttctgatataaaaaatgaatatatagatat 115  Q
    ||||||||||||||| |||||||||||||||||||||||||||    
T  26609797 tgtacagtttttcttttgatataaaaaatgaatatatagatat 26609755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 387 - 432
Target Start/End: Complemental strand, 6360429 - 6360384
Alignment:
Q  387 gcttggggaatctcatggaaaccaaaggagggaacttttagggttt 432  Q
    |||||| ||||||||||||||||||||||| |||||||||||||||    
T  6360429 gcttggtgaatctcatggaaaccaaaggagagaacttttagggttt 6360384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 26609869 - 26609816
Alignment:
Q  19 aaccgttccctaccttcgaatgatctttcttctggaacatgacagtctgatata 72  Q
    |||| |||||||||||||||||| |||||||||||| ||||||| |||||||||    
T  26609869 aacccttccctaccttcgaatgaactttcttctggaccatgacaatctgatata 26609816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 388 - 432
Target Start/End: Original strand, 2389934 - 2389978
Alignment:
Q  388 cttggggaatctcatggaaaccaaaggagggaacttttagggttt 432  Q
    ||||| |||||||||||||||||||||||| ||||||||||||||    
T  2389934 cttggtgaatctcatggaaaccaaaggaggaaacttttagggttt 2389978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 387 - 430
Target Start/End: Original strand, 22269625 - 22269668
Alignment:
Q  387 gcttggggaatctcatggaaaccaaaggagggaacttttagggt 430  Q
    |||||| |||||||||||||||||||||||||||| ||||||||    
T  22269625 gcttggtgaatctcatggaaaccaaaggagggaacatttagggt 22269668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 387 - 430
Target Start/End: Complemental strand, 34311234 - 34311191
Alignment:
Q  387 gcttggggaatctcatggaaaccaaaggagggaacttttagggt 430  Q
    |||||| |||||||||||||||||||||| ||||||||||||||    
T  34311234 gcttggtgaatctcatggaaaccaaaggaaggaacttttagggt 34311191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 394 - 428
Target Start/End: Complemental strand, 2361481 - 2361447
Alignment:
Q  394 gaatctcatggaaaccaaaggagggaacttttagg 428  Q
    |||||||||||||||||||||||||||||||||||    
T  2361481 gaatctcatggaaaccaaaggagggaacttttagg 2361447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 200 - 312
Target Start/End: Complemental strand, 20284605 - 20284494
Alignment:
Q  200 agaatggatggtttctgctgaaggcaaatcgtggcgcgattg-gtacaggcgtgacgcgatttgtggataaggttgtcgtacattgggtcgtacgcttca 298  Q
    |||||||||| ||| |||||||||||||||| ||| |||||  |||| |||||| |||||||||||||||||   ||  ||| |||||||||||| ||      
T  20284605 agaatggatgtttt-tgctgaaggcaaatcgcggcacgatttagtactggcgtggcgcgatttgtggataagaccgttatac-ttgggtcgtacgtttat 20284508  T
Q  299 accgtggcgcgatt 312  Q
    ||||||||||||||    
T  20284507 accgtggcgcgatt 20284494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 62
Target Start/End: Complemental strand, 26622469 - 26622426
Alignment:
Q  19 aaccgttccctaccttcgaatgatctttcttctggaacatgaca 62  Q
    |||| |||||||||||||||||| |||||||||||| |||||||    
T  26622469 aacccttccctaccttcgaatgaactttcttctggaccatgaca 26622426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 394 - 430
Target Start/End: Original strand, 5116292 - 5116328
Alignment:
Q  394 gaatctcatggaaaccaaaggagggaacttttagggt 430  Q
    |||||||||||| |||||||||||| |||||||||||    
T  5116292 gaatctcatggataccaaaggaggggacttttagggt 5116328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 394 - 430
Target Start/End: Complemental strand, 22328910 - 22328874
Alignment:
Q  394 gaatctcatggaaaccaaaggagggaacttttagggt 430  Q
    |||||||||||||||||||||||  ||||||||||||    
T  22328910 gaatctcatggaaaccaaaggagaaaacttttagggt 22328874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 100; Significance: 3e-49; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 167 - 432
Target Start/End: Complemental strand, 27638349 - 27638086
Alignment:
Q  167 cgattttgagtggcgcgtcacgattttggtggtagaatggatggtttctgctgaaggcaaatcgtggcgcgattg-gtacaggcgtgacgcgatttgtgg 265  Q
    ||||||| || |||| | |||||||||| ||| |||||||||||||||||  |||| ||||| |||||||||||  || ||| |||||| |||||| | |    
T  27638349 cgattttcagaggcgtggcacgattttgctggcagaatggatggtttctgtcgaag-caaattgtggcgcgattttgtgcag-cgtgacacgatttctag 27638252  T
Q  266 ataaggttgtcgtacattgggtcgtacgct-tcaaccgtggcgcgatttttggccggcgcagcgcgattttgacagatttgtcacactatttaagcactc 364  Q
    |||||||  | |||| ||||||||||| |  | ||||||||||||||||| ||| |||||   ||||||||||||||| |||||||||||||||||||||    
T  27638251 ataaggtcattgtaccttgggtcgtacacaatgaaccgtggcgcgatttt-ggctggcgcgatgcgattttgacagatctgtcacactatttaagcactc 27638153  T
Q  365 tatgacccatttagtgaaataggcttggggaatctcatggaaaccaaaggagggaacttttagggttt 432  Q
    |||||||||||| || ||| |||||||| ||||||||||||||||||||||||||||||||| |||||    
T  27638152 tatgacccattt-gttaaaaaggcttggtgaatctcatggaaaccaaaggagggaacttttaaggttt 27638086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 202 - 335
Target Start/End: Original strand, 31182648 - 31182780
Alignment:
Q  202 aatggatggtttctgctgaaggcaaatcgtggcgcgattg-gtacaggcgtgacgcgatttgtggataaggttgtcgtacattgggtcgtacgcttcaac 300  Q
    |||||||||||| |||||||| |||||||||||||||||  || |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  31182648 aatggatggtttttgctgaag-caaatcgtggcgcgattttgtgcaggagtgacgcgatttgtggataaggttgtcgtaccttgggtcgtacgcttcaac 31182746  T
Q  301 cgtggcgcgatttttggccggcgcagcgcgatttt 335  Q
    |||||||||| ||||  | ||||||||||||||||    
T  31182747 cgtggcgcga-ttttcacaggcgcagcgcgatttt 31182780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 149 - 292
Target Start/End: Complemental strand, 5887961 - 5887818
Alignment:
Q  149 aaactcataattgtgacacgattttgagtggcgcgtcacgattttggtggtagaatggatggtttctgctgaaggcaaatcgtggcgcgattggtacagg 248  Q
    ||||||||||| ||||||||||| ||| |||||   |||||||||| ||| |||| | ||||||||||||||||| ||||||||| |||||| || ||||    
T  5887961 aaactcataatcgtgacacgattatgaatggcgtagcacgattttgttggcagaacgtatggtttctgctgaaggaaaatcgtggtgcgatttgtgcagg 5887862  T
Q  249 cgtgacgcgatttgtggataaggttgtcgtacattgggtcgtac 292  Q
     |||||||||||| |||||||||||||||||  |||||||||||    
T  5887861 tgtgacgcgatttatggataaggttgtcgtaacttgggtcgtac 5887818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 167 - 315
Target Start/End: Original strand, 16451730 - 16451879
Alignment:
Q  167 cgattttgagtggcgcgtcacgattttggtggtagaatggatggtttctgctgaaggcaaatcgtggcgcgattg-gtacaggcgtgacgcgatttgtgg 265  Q
    |||||||| | |||| ||| |||||||  ||| |||||||||||||||||||||||  | ||||||||||||||  |||||||||||||||||||| |||    
T  16451730 cgattttgggaggcgtgtcgcgattttcttggcagaatggatggtttctgctgaagaaatatcgtggcgcgattttgtacaggcgtgacgcgatttctgg 16451829  T
Q  266 ataaggttgtcgtacattgggtcgtacgcttcaaccgtggcgcgattttt 315  Q
    |||||| ||| |||||||||||| ||||||| || |||||  ||||||||    
T  16451830 ataaggctgttgtacattgggtcatacgcttaaatcgtggtacgattttt 16451879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 225 - 303
Target Start/End: Complemental strand, 8566407 - 8566328
Alignment:
Q  225 aaatcgtggcgcgattg-gtacaggcgtgacgcgatttgtggataaggttgtcgtacattgggtcgtacgcttcaaccgt 303  Q
    ||||||||||||||||  || |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||    
T  8566407 aaatcgtggcgcgattttgtgcaggcgtgacgcaatttgtggataaggttgtcgtaccttgggtcgtacgcttcaaccgt 8566328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 200 - 312
Target Start/End: Original strand, 24553106 - 24553218
Alignment:
Q  200 agaatggatggtttctgctgaaggcaaatcgtggcgcgattg-gtacaggcgtgacgcgatttgtggataaggttgtcgtacattgggtcgtacgcttca 298  Q
    |||||||||| ||| ||||||||||||||||||||  ||||  ||||  ||||| ||||||||||||||||||  || |||| |||||||||||| ||      
T  24553106 agaatggatgtttt-tgctgaaggcaaatcgtggcatgatttagtactagcgtggcgcgatttgtggataaggccgttgtaccttgggtcgtacgtttat 24553204  T
Q  299 accgtggcgcgatt 312  Q
    ||||||||||||||    
T  24553205 accgtggcgcgatt 24553218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 348 - 432
Target Start/End: Original strand, 28277926 - 28278011
Alignment:
Q  348 acactatttaagcactctatgacccatttagtgaaa-taggcttggggaatctcatggaaaccaaaggagggaacttttagggttt 432  Q
    ||||||||||||||||  |||||||||||  ||||| || |||||| |||||||| |||||| |||||||| ||||||||||||||    
T  28277926 acactatttaagcacttcatgacccatttgttgaaaataagcttggtgaatctcaaggaaactaaaggaggaaacttttagggttt 28278011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 348 - 432
Target Start/End: Original strand, 5057662 - 5057744
Alignment:
Q  348 acactatttaagcactctatgacccatttagtgaaataggcttggggaatctcatggaaaccaaaggagggaacttttagggttt 432  Q
    ||||||| ||||||||| ||||||||||| || ||| || || || ||||||||||||||||||||||| |||||||||||||||    
T  5057662 acactatgtaagcactccatgacccattt-gttaaagag-ctgggtgaatctcatggaaaccaaaggagagaacttttagggttt 5057744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 329 - 432
Target Start/End: Original strand, 213062 - 213164
Alignment:
Q  329 cgattttgacagatttgtcacactatttaagcactctatgacccatttagtgaaataggcttggggaatctcatggaaaccaaaggagggaacttttagg 428  Q
    |||||||||||||| ||  ||||  |||||| |||| |||||||||||  ||   || |||||  |||||||||||||||||||||||||||||||||||    
T  213062 cgattttgacagatctgaaacacgttttaagtactccatgacccattttttggg-taagcttgatgaatctcatggaaaccaaaggagggaacttttagg 213160  T
Q  429 gttt 432  Q
    ||||    
T  213161 gttt 213164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 387 - 432
Target Start/End: Original strand, 38746656 - 38746701
Alignment:
Q  387 gcttggggaatctcatggaaaccaaaggagggaacttttagggttt 432  Q
    |||||| ||||||||||||||||||||||| |||||||||||||||    
T  38746656 gcttggtgaatctcatggaaaccaaaggagagaacttttagggttt 38746701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 387 - 430
Target Start/End: Original strand, 30802592 - 30802635
Alignment:
Q  387 gcttggggaatctcatggaaaccaaaggagggaacttttagggt 430  Q
    |||||| ||||||||||||||||||| |||||||||||||||||    
T  30802592 gcttggtgaatctcatggaaaccaaatgagggaacttttagggt 30802635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 352 - 430
Target Start/End: Complemental strand, 16642428 - 16642351
Alignment:
Q  352 tatttaagcactctatgacccatttagtgaaataggcttggggaatctcatggaaaccaaaggagggaacttttagggt 430  Q
    ||||||||||||| |||||||||||  ||   || |||||| ||||||||||||||||||||||| | |||||||||||    
T  16642428 tatttaagcactccatgacccatttgttggg-taagcttggtgaatctcatggaaaccaaaggagagcacttttagggt 16642351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 196 - 293
Target Start/End: Complemental strand, 28832764 - 28832667
Alignment:
Q  196 tggtagaatggatggtttctgctgaaggcaaatcgtggcgcgattg-gtacaggcgtgacgcgatttgtggataaggttgtcgtacattgggtcgtacg 293  Q
    |||| ||||||||| ||| ||||||||| |||||| |||||||||  |||  || ||| ||||||||||||||||||| || |||| ||||||||||||    
T  28832764 tggtggaatggatgtttt-tgctgaaggaaaatcgcggcgcgatttagtattggtgtggcgcgatttgtggataaggtcgttgtaccttgggtcgtacg 28832667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 387 - 432
Target Start/End: Original strand, 27015183 - 27015228
Alignment:
Q  387 gcttggggaatctcatggaaaccaaaggagggaacttttagggttt 432  Q
    |||||| |||||| ||||||| ||||||||||||||||||||||||    
T  27015183 gcttggcgaatctaatggaaatcaaaggagggaacttttagggttt 27015228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 387 - 432
Target Start/End: Original strand, 40146912 - 40146957
Alignment:
Q  387 gcttggggaatctcatggaaaccaaaggagggaacttttagggttt 432  Q
    |||||| |||||||||||||||||||||| | ||||||||||||||    
T  40146912 gcttggtgaatctcatggaaaccaaaggatgaaacttttagggttt 40146957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 200 - 314
Target Start/End: Original strand, 31300175 - 31300289
Alignment:
Q  200 agaatggatggtttctgctgaaggcaaatcgtggcgcgatt-ggtacaggcgtgacgcgatttgtggataaggttgtcgtacattgggtcgtacgcttca 298  Q
    |||||||||| ||| |||||||||||||| |  |||||||| ||||| |||||| ||||||| ||||||||||  || |||  |||||||||||| || |    
T  31300175 agaatggatgtttt-tgctgaaggcaaattgcagcgcgatttggtactggcgtggcgcgattggtggataaggacgttgtatcttgggtcgtacgtttaa 31300273  T
Q  299 accgtggcgcgatttt 314  Q
    | |||||  |||||||    
T  31300274 atcgtggtacgatttt 31300289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 260 - 315
Target Start/End: Original strand, 33831413 - 33831468
Alignment:
Q  260 ttgtggataaggttgtcgtacattgggtcgtacgcttcaaccgtggcgcgattttt 315  Q
    ||||||||||| ||||||||| |||  ||||||| |||||||||||||| ||||||    
T  33831413 ttgtggataagattgtcgtaccttgtatcgtacgtttcaaccgtggcgcaattttt 33831468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 429
Target Start/End: Complemental strand, 14689928 - 14689883
Alignment:
Q  384 taggcttggggaatctcatggaaaccaaaggagggaacttttaggg 429  Q
    ||||||||| ||||||||||||||| |||||||  |||||||||||    
T  14689928 taggcttggtgaatctcatggaaactaaaggagaaaacttttaggg 14689883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 200 - 271
Target Start/End: Original strand, 17003538 - 17003609
Alignment:
Q  200 agaatggatggtttctgctgaaggcaaatcgtggcgcgattg-gtacaggcgtgacgcgatttgtggataagg 271  Q
    |||||||||| ||| |||||||| ||||||| ||| |||||  |||| |||||||| ||||||||||||||||    
T  17003538 agaatggatgtttt-tgctgaagacaaatcgcggctcgatttagtactggcgtgacacgatttgtggataagg 17003609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0466 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0466
Description:

Target: scaffold0466; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 387 - 432
Target Start/End: Original strand, 6979 - 7024
Alignment:
Q  387 gcttggggaatctcatggaaaccaaaggagggaacttttagggttt 432  Q
    |||||| |||||||||||||||||||||||||||||||||||||||    
T  6979 gcttggtgaatctcatggaaaccaaaggagggaacttttagggttt 7024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 388 - 432
Target Start/End: Complemental strand, 80799 - 80755
Alignment:
Q  388 cttggggaatctcatggaaaccaaaggagggaacttttagggttt 432  Q
    ||||| |||||||||||||||||||||||||||||||||||||||    
T  80799 cttggtgaatctcatggaaaccaaaggagggaacttttagggttt 80755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0286 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 395 - 432
Target Start/End: Original strand, 11217 - 11254
Alignment:
Q  395 aatctcatggaaaccaaaggagggaacttttagggttt 432  Q
    ||||||||||||||||||||||||||||||||||||||    
T  11217 aatctcatggaaaccaaaggagggaacttttagggttt 11254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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