View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11745_low_58 (Length: 431)
Name: NF11745_low_58
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11745_low_58 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 346; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 22 - 422
Target Start/End: Original strand, 4175269 - 4175669
Alignment:
| Q |
22 |
ggacgcgataatcaatgaccgaacaca-taccaaacaattactacgaattgacatattacaacaaatgcatgcttaagaaggtagcataaaatacttaca |
120 |
Q |
| |
|
||||||||||||||||||| ||||||| |||||||||| | |||||||||| |||||||||||||||||||||||| |||||||||||||||||||| | |
|
|
| T |
4175269 |
ggacgcgataatcaatgactgaacacaataccaaacaagtgctacgaattgtcatattacaacaaatgcatgcttatgaaggtagcataaaatacttt-a |
4175367 |
T |
|
| Q |
121 |
catacaaaaaagatttagtatatattaggtaaaatgaatgaatcaaagaactggttcgactaaccaacgcttgttggttcaaacaagattgactttggtt |
220 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4175368 |
tatacaaaaaagatttagtatatactaggtaaaatgaatgaatcaaagaactagttcgactaaccaacgcttgttggttcaaacaagattgactttggtt |
4175467 |
T |
|
| Q |
221 |
ccccttaaataaggttttgaattcaagtcttatgaatgaaaaaatagcgttggtagaactttatcatcttccgagtccacccgactcaactcaaactgca |
320 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4175468 |
ccccttaaataaggttttgaattcaagtcttatgaatgaaaaaatagcgttggtagaactttatcatcttccgagtccacccgactcaactcaaactgca |
4175567 |
T |
|
| Q |
321 |
cggagggtctagatcaaaaagaaaaagaaactatcttgattcatcaaacatctttcttcacattcgtgcaagggatgtaagctgatgaccgttgtttctt |
420 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
4175568 |
cggagggtctagatcaaaaagaaaaagaaactatcttgattcatcaaacatctttcttcacattcgtgcaagggatgtaaggtgatgaccgttgtttctt |
4175667 |
T |
|
| Q |
421 |
ct |
422 |
Q |
| |
|
|| |
|
|
| T |
4175668 |
ct |
4175669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 18 - 290
Target Start/End: Original strand, 4173927 - 4174199
Alignment:
| Q |
18 |
atagggacgcgataatcaatgaccgaacacataccaaacaattactacgaattgacatattacaacaaatgcatgcttaagaaggtagcataaaatactt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4173927 |
atagggacgcgataatcaatgaccgaacacataccaaacaattactacgaattgacatattacaacaaatgcatgcttaagaaggtagcataaaatactt |
4174026 |
T |
|
| Q |
118 |
acacatacaaaaaagatttagtatatattaggtaaaatgaatgaatcaaagaactggttcgactaaccaacgcttgttggttcaaacaagattgactttg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
4174027 |
acacatacaaaaaagatttagtatatattaggtaaaatgaatgaatcaaagaactggttcgactaaccaacgcttgttggttcaaataagattgactttg |
4174126 |
T |
|
| Q |
218 |
gttccccttaaataaggttttgaattcaagtcttatgaatgaaaaaatagcgttggtagaactttatcatctt |
290 |
Q |
| |
|
|||| |||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4174127 |
gttctccttaaataaggttttgaattcgagtcttgtgaatgaaaaaatagcgttggtagaactttatcatctt |
4174199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 85
Target Start/End: Complemental strand, 4042907 - 4042843
Alignment:
| Q |
22 |
ggacgcgataatcaatgaccgaacacat-accaaacaattactacgaattgacatattacaacaa |
85 |
Q |
| |
|
||||||||| ||||||||| ||||||| ||||||||| | |||| || |||||||||||||||| |
|
|
| T |
4042907 |
ggacgcgatgatcaatgactgaacacaacaccaaacaagtgctacaaaatgacatattacaacaa |
4042843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University