View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11745_low_60 (Length: 426)
Name: NF11745_low_60
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11745_low_60 |
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Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-103; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 12 - 210
Target Start/End: Original strand, 14667973 - 14668171
Alignment:
| Q |
12 |
agagacatatgcacatagaaagcaagtcaattaggattgaattttaggtttcaaagtgaaaggaaaaactatgcgctggagtcagatttttgtatgctct |
111 |
Q |
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| T |
14667973 |
agagacatatgcacatagaaagcaagtcaattaggattgcattttaggtttcaaagtgaaagggaaaactatgcgctggagtcagatttttgtatgctct |
14668072 |
T |
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| Q |
112 |
tagtgtatttacactgtgccttttaagctggtcaacattagtctcactttaacacaatttcattaatttaatcaaaccgaattcacaagctaaatgatc |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14668073 |
tagtgtatttacactgtgccttttaagctggtcaacattagtctcactttaacacaatttcattaatttaatcaaaccgaattcacaagctaaatgatc |
14668171 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 235 - 408
Target Start/End: Original strand, 14668194 - 14668367
Alignment:
| Q |
235 |
atgataaaaagcttatagcatttcatcaattagaatatgatgaatacaagcaggatcaatggaaatgtggaaggccgtccttgctaacacttatgagcaa |
334 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
14668194 |
atgataaaaagcttatagcatttcatcaattagaatatgatgaatacaagcaggatcaatggaaatgtggaaggccgcccttgctaacacttatgagcaa |
14668293 |
T |
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| Q |
335 |
cccttttgacttgtctcctaataaactcatctttaatttttacaacggacaagattatctctacggtctcggat |
408 |
Q |
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| T |
14668294 |
cccttttgacttgtatcctaataaactcatctttaatttttacaacggacaagaatatctctacggtctcggat |
14668367 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 236 - 408
Target Start/End: Complemental strand, 14707617 - 14707445
Alignment:
| Q |
236 |
tgataaaaagcttatagcatttcatcaattagaatatgatgaatacaagcaggatcaatggaaatgtggaaggccgtccttgctaacacttatgagcaac |
335 |
Q |
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| T |
14707617 |
tgataaaaagcttatagcatttcattaattagaatatgatgaatacaagtaggatcgatggaaatgtggaaggccgcccttgctaacacttatgagcaac |
14707518 |
T |
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| Q |
336 |
ccttttgacttgtctcctaataaactcatctttaatttttacaacggacaagattatctctacggtctcggat |
408 |
Q |
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| T |
14707517 |
ccttttgacttgtctcctaataaactcaatcttaatttttacaacggacaagattatctctacggtctcggat |
14707445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 50 - 139
Target Start/End: Complemental strand, 14686208 - 14686120
Alignment:
| Q |
50 |
gaattttaggtttcaaagtgaaaggaaaaactatgcgctggagtcagatttttgtatgctcttagtgtatttacactgtgccttttaagc |
139 |
Q |
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| T |
14686208 |
gaatttgaggtttcaaagtgaaagtgaaaactatgtgctagagtcagatttttgtatgttcttagtgtactta-actgtgcctattaagc |
14686120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 160 - 210
Target Start/End: Complemental strand, 14707687 - 14707637
Alignment:
| Q |
160 |
ttaacacaatttcattaatttaatcaaaccgaattcacaagctaaatgatc |
210 |
Q |
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| T |
14707687 |
ttaacacaatttcattaatttaatcaaaccgatttcacaagctaaatgatc |
14707637 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 134 - 210
Target Start/End: Original strand, 14664999 - 14665075
Alignment:
| Q |
134 |
ttaagctggtcaacattagtctcactttaacacaatttcattaatttaatcaaaccgaattcacaagctaaatgatc |
210 |
Q |
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| T |
14664999 |
ttaagctaatcaacattagtcccactttaaaacaatttcattgatttaatcaaaccgcattcataagcaaaatgatc |
14665075 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 182; Significance: 3e-98; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 12 - 209
Target Start/End: Complemental strand, 30733227 - 30733030
Alignment:
| Q |
12 |
agagacatatgcacatagaaagcaagtcaattaggattgaattttaggtttcaaagtgaaaggaaaaactatgcgctggagtcagatttttgtatgctct |
111 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
30733227 |
agagacatatgcacatagaatgcaagtcaattaggattgcattttcggtttcaaagtgaaagggaaaactatgcgctggagtcagatttttgtatgctct |
30733128 |
T |
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| Q |
112 |
tagtgtatttacactgtgccttttaagctggtcaacattagtctcactttaacacaatttcattaatttaatcaaaccgaattcacaagctaaatgat |
209 |
Q |
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| T |
30733127 |
tagtgtatttacactgtgccttttaagctggtcaacattagtctcactttaacacaatttcattaatttaatcaaaccgaattcacaagctaaatgat |
30733030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 235 - 408
Target Start/End: Complemental strand, 30733005 - 30732832
Alignment:
| Q |
235 |
atgataaaaagcttatagcatttcatcaattagaatatgatgaatacaagcaggatcaatggaaatgtggaaggccgtccttgctaacacttatgagcaa |
334 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
30733005 |
atgataaaaagcttatagcatttcatcaattagaatatgatgaatacaagcaggatcaatggaaatgtggaaggccgcccttgctaacacttatgagcaa |
30732906 |
T |
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| Q |
335 |
cccttttgacttgtctcctaataaactcatctttaatttttacaacggacaagattatctctacggtctcggat |
408 |
Q |
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| T |
30732905 |
cccttttgacttgtctcctaataaactcatctttaatttttacaacggataagattatctctacggtctcggat |
30732832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 134 - 201
Target Start/End: Complemental strand, 30735509 - 30735442
Alignment:
| Q |
134 |
ttaagctggtcaacattagtctcactttaacacaatttcattaatttaatcaaaccgaattcacaagc |
201 |
Q |
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||||||| |||||||||||| |||||||| |||||||||| ||||||||||||||| ||||| |||| |
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| T |
30735509 |
ttaagctaatcaacattagtcccactttaaaacaatttcatcaatttaatcaaaccgcattcataagc |
30735442 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 51 - 97
Target Start/End: Complemental strand, 8995466 - 8995420
Alignment:
| Q |
51 |
aattttaggtttcaaagtgaaaggaaaaactatgcgctggagtcaga |
97 |
Q |
| |
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||||| |||||||||||||||||| ||||||||| |||||||||||| |
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| T |
8995466 |
aatttgaggtttcaaagtgaaagggaaaactatgtgctggagtcaga |
8995420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 50 - 106
Target Start/End: Original strand, 10945242 - 10945298
Alignment:
| Q |
50 |
gaattttaggtttcaaagtgaaaggaaaaactatgcgctggagtcagatttttgtat |
106 |
Q |
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|||||| |||||||||| ||||||| ||||||||| ||||||||||||||||||||| |
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| T |
10945242 |
gaatttgaggtttcaaactgaaagggaaaactatgtgctggagtcagatttttgtat |
10945298 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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