View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11745_low_61 (Length: 425)
Name: NF11745_low_61
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11745_low_61 |
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Alignment Details
Target: chr7 (Bit Score: 268; Significance: 1e-149; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 25 - 360
Target Start/End: Original strand, 8173003 - 8173341
Alignment:
| Q |
25 |
gggttaaccaacgaagcagttggattttcactaggataaacataaaatggaattgaagtaggatcaattggaaactgaataacaagaatatgcaccagtt |
124 |
Q |
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| T |
8173003 |
gggttaaccaacgaagcagttggattttcacttggataaacataaaatggaattgaagtaggatcaattggaaactgaataacaagaatatgcaccagtt |
8173102 |
T |
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| Q |
125 |
atggttgattacacaccattgctgtagattgaagaacggatcagagatatttgaggctcatgatgccataac-----aaacaaatagaagtgtgagaata |
219 |
Q |
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| T |
8173103 |
atggttgattacacaccattgttgtagattgaagaacggatcagaga---ttgaggctcatgatgccataacaaattaaacaaatagaagtgtgagaata |
8173199 |
T |
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| Q |
220 |
gattgagaaaaaatatttgaacaatgagcgacaatattttgatgtctcatctaagtgatatgtggcatcatatatgtatttaaagtgatta-tttataga |
318 |
Q |
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| T |
8173200 |
gattgagaaaaaatatttgaacgatgagcgataatattttgatttctcatctaagtgatatgtggcatcatatatgtatttaaaggggttattttttaga |
8173299 |
T |
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| Q |
319 |
ttatgcttatttgaacaacgcacatgagaagttgaccattaa |
360 |
Q |
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| T |
8173300 |
ttatgcttatttgaacaacgcacatgagaagttgaccattaa |
8173341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 359 - 419
Target Start/End: Original strand, 8174717 - 8174777
Alignment:
| Q |
359 |
aaataagcaaagcacttaacaaaattcactcctaactagacaacttttctataatcattgt |
419 |
Q |
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| T |
8174717 |
aaataagcaaagcacttaacaaaattcactcctaaatagacaacttttctataatcattgt |
8174777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 302 - 360
Target Start/End: Complemental strand, 48775334 - 48775276
Alignment:
| Q |
302 |
aagtgattatttatagattatgcttatttgaacaacgcacatgagaagttgaccattaa |
360 |
Q |
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| T |
48775334 |
aagtgattatttttagattcagcttattcgaacaacacaaacgagaagttgaccattaa |
48775276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 301 - 353
Target Start/End: Complemental strand, 30534595 - 30534543
Alignment:
| Q |
301 |
aaagtgattatttatagattatgcttatttgaacaacgcacatgagaagttga |
353 |
Q |
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| T |
30534595 |
aaagtgattatttttagattatgcttatttgaataacgcaaatgagaagttga |
30534543 |
T |
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