View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11745_low_62 (Length: 424)
Name: NF11745_low_62
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11745_low_62 |
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Alignment Details
Target: chr1 (Bit Score: 328; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 50 - 413
Target Start/End: Complemental strand, 35939602 - 35939239
Alignment:
| Q |
50 |
aataataatattgtggtgatgattaacgatgcaggtgacaaatactgcaactggagctcaggtaacagtgagaatagtggaccaatgctctaatggtgga |
149 |
Q |
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| T |
35939602 |
aataataatattgtggtgatgactaatgatgcaggtgacaaatactgcaactggagctcaggtaacagtgagaatagtggaccaatgctccaacggtgga |
35939503 |
T |
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| Q |
150 |
cttgacttagatgggaatgtcttcaatcaaattgataccaatggtcagggcgttcagaatggtcaccttacagttaactatagctttgttaattgcggtg |
249 |
Q |
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| T |
35939502 |
cttgacttagatgtgaatgtcttcaatcaaattgataccaatggacagggcgttcagaatggtcaccttacagttaactatagctttgttaattgcggtg |
35939403 |
T |
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| Q |
250 |
attaattgattcattcagcagtgtgaatgaatcactctttgtaataaaaattatataagtagtactgctactttcttataacaccataaataaaactaat |
349 |
Q |
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| T |
35939402 |
attaattgattcattcagcagtgtgaatgaatcactctttgtaataaaaattatataagtagtactgctgctttcttataacaccataaataaaactaat |
35939303 |
T |
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| Q |
350 |
gagtggtgctacgtgtatactttaattggatgaaatttatgacgaatctatacttgttcatctc |
413 |
Q |
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| T |
35939302 |
gagtggtgctacgtgtatactttaattggatgaaatttatgatgaatctatacttgttcttctc |
35939239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 77 - 244
Target Start/End: Complemental strand, 35946570 - 35946403
Alignment:
| Q |
77 |
gatgcaggtgacaaatactgcaactggagctcaggtaacagtgagaatagtggaccaatgctctaatggtggacttgacttagatgggaatgtcttcaat |
176 |
Q |
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| T |
35946570 |
gatgcaggtgaaaaatactgcaactggagctcaggaaacagtgagaatagtggatcagtgcgccaatggtggacttgacttagatgtgaatgtcttcaaa |
35946471 |
T |
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| Q |
177 |
caaattgataccaatggtcagggcgttcagaatggtcaccttacagttaactatagctttgttaattg |
244 |
Q |
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| T |
35946470 |
cgaattgataccaatggacagggttaccagaagggtcaccttatagttgattatgtctttgttaattg |
35946403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 62 - 241
Target Start/End: Complemental strand, 35952730 - 35952551
Alignment:
| Q |
62 |
gtggtgatgattaacgatgcaggtgacaaatactgcaactggagctcaggtaacagtgagaatagtggaccaatgctctaatggtggacttgacttagat |
161 |
Q |
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| T |
35952730 |
gtggtgatgactaatgatgcaggtgacaaatactgcaactggagctcaggcaacagtaagaatagtggaccaatgtgccaatggtgggttagacttggat |
35952631 |
T |
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| Q |
162 |
gggaatgtcttcaatcaaattgataccaatggtcagggcgttcagaatggtcaccttacagttaactatagctttgttaa |
241 |
Q |
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| T |
35952630 |
gtgaatgtcttcaatcaaattgataccaatggacaaggttaccagcagggtcaccttacggttaactatgtctttgttaa |
35952551 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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