View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11745_low_66 (Length: 412)

Name: NF11745_low_66
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11745_low_66
NF11745_low_66
[»] chr5 (4 HSPs)
chr5 (8-192)||(12540921-12541105)
chr5 (238-389)||(12540724-12540875)
chr5 (8-192)||(28385570-28385754)
chr5 (242-386)||(28385376-28385520)
[»] chr7 (2 HSPs)
chr7 (242-389)||(3417520-3417667)
chr7 (17-190)||(3417295-3417468)
[»] chr2 (6 HSPs)
chr2 (244-389)||(13448402-13448547)
chr2 (242-384)||(13454878-13455020)
chr2 (242-389)||(13440239-13440386)
chr2 (11-192)||(13448599-13448780)
chr2 (8-192)||(13440436-13440620)
chr2 (43-191)||(13455071-13455219)
[»] chr4 (6 HSPs)
chr4 (247-389)||(48965368-48965510)
chr4 (242-384)||(48958188-48958333)
chr4 (242-356)||(48961365-48961482)
chr4 (284-360)||(48912380-48912456)
chr4 (78-146)||(48958429-48958497)
chr4 (136-188)||(48974349-48974401)
[»] chr6 (2 HSPs)
chr6 (277-359)||(12590200-12590282)
chr6 (242-359)||(12483454-12483577)
[»] scaffold0536 (2 HSPs)
scaffold0536 (277-360)||(10521-10604)
scaffold0536 (277-327)||(6539-6589)
[»] chr8 (1 HSPs)
chr8 (58-146)||(12641287-12641375)


Alignment Details
Target: chr5 (Bit Score: 173; Significance: 7e-93; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 8 - 192
Target Start/End: Complemental strand, 12541105 - 12540921
Alignment:
Q  8 aagcagagaggggaaatgagggtgctgcgagtgagcacgagtcccttagctggctcaactcacagcaagttaactcagtggtgtacatatgttttggaag 107  Q
    |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12541105 aagcagggaggggaaatgagggtgctgcgagcgagcacgagtcccttagctggctcaactcacagcaagttaactcagtggtgtacatatgttttggaag 12541006  T
Q  108 cataaatcatttctttgacaaacaactatatgagattgcatgcgcagtagaaggaatgggtcacccattcatatgggttgttcct 192  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  12541005 cataaatcatttctttgacaaacaactatatgagattgcatgtgcagtagaaggaatgggtcacccattcatatgggttgttcct 12540921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 238 - 389
Target Start/End: Complemental strand, 12540875 - 12540724
Alignment:
Q  238 tggatgccgaagggatttgaggagagaaacattggaaaaaagggtttgatcattaggggttgggccccacaggttaagatattgagccaccctgcggtgg 337  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12540875 tggatgccgaagggatttgaggagagaaacattggaaaaaagggtttgatcattaggggttgggccccacaggttaagatattgagccaccctgcggtgg 12540776  T
Q  338 ggggatttatgacacattgtgggggaaactcaattgtagaggctgttggtgc 389  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12540775 ggggatttatgacacattgtgggggaaactcaattgtagaggctgttggtgc 12540724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 8 - 192
Target Start/End: Complemental strand, 28385754 - 28385570
Alignment:
Q  8 aagcagagaggggaaatgagggtgctgcgagtgagcacgagtcccttagctggctcaactcacagcaagttaactcagtggtgtacatatgttttggaag 107  Q
    ||||||||| ||||||  || ||| || ||| |||||||||| ||| | ||||||||| ||||||| |||||||||||| ||||||||||||||||||||    
T  28385754 aagcagagaagggaaacaagagtgatgtgagcgagcacgagtgcctgaactggctcaaatcacagcgagttaactcagttgtgtacatatgttttggaag 28385655  T
Q  108 cataaatcatttctttgacaaacaactatatgagattgcatgcgcagtagaaggaatgggtcacccattcatatgggttgttcct 192  Q
    |||||| ||||||| ||| |||||||||||||||||||||||||||||||||| |   |||||||||||||||||||||||||||    
T  28385654 cataaaccatttctctgataaacaactatatgagattgcatgcgcagtagaagcatcaggtcacccattcatatgggttgttcct 28385570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 242 - 386
Target Start/End: Complemental strand, 28385520 - 28385376
Alignment:
Q  242 tgccgaagggatttgaggagagaaacattggaaaaaagggtttgatcattaggggttgggccccacaggttaagatattgagccaccctgcggtgggggg 341  Q
    |||| ||||||||||||||||||||||||||||| |||||||| || || ||||||||||||||||| |||  |||||||||| ||||||||||||||||    
T  28385520 tgccaaagggatttgaggagagaaacattggaaagaagggtttcataatcaggggttgggccccacaagttctgatattgagcaaccctgcggtgggggg 28385421  T
Q  342 atttatgacacattgtgggggaaactcaattgtagaggctgttgg 386  Q
    |||| |||||||||| || || |||||||||||||||||||||||    
T  28385420 atttctgacacattgcggagggaactcaattgtagaggctgttgg 28385376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 120; Significance: 3e-61; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 242 - 389
Target Start/End: Original strand, 3417520 - 3417667
Alignment:
Q  242 tgccgaagggatttgaggagagaaacattggaaaaaagggtttgatcattaggggttgggccccacaggttaagatattgagccaccctgcggtgggggg 341  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |||||    
T  3417520 tgccgaagggatttgaggagagaaacattggaaagaagggtttgatcgttaggggttgggccccacaggttcagatattgagccaccctgcggtaggggg 3417619  T
Q  342 atttatgacacattgtgggggaaactcaattgtagaggctgttggtgc 389  Q
    ||||||||||||||||||||| |||||| |||| ||||||||||||||    
T  3417620 atttatgacacattgtggggggaactcatttgttgaggctgttggtgc 3417667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 17 - 190
Target Start/End: Original strand, 3417295 - 3417468
Alignment:
Q  17 ggggaaatgagggtgctgcgagtgagcacgagtcccttagctggctcaactcacagcaagttaactcagtggtgtacatatgttttggaagcataaatca 116  Q
    ||||||| |||||||||| ||||||||| |||| |||  | |||||||||||||| ||||||||||||||| |||||||||||||||||||| ||||  |    
T  3417295 ggggaaacgagggtgctgagagtgagcatgagtgcctgcgttggctcaactcacaacaagttaactcagtgttgtacatatgttttggaagcttaaacta 3417394  T
Q  117 tttctttgacaaacaactatatgagattgcatgcgcagtagaaggaatgggtcacccattcatatgggttgttc 190  Q
    ||||| ||| |||||||||||||||||||||| |||| |||||| |  ||||||||||||||||||||||||||    
T  3417395 tttctctgataaacaactatatgagattgcatacgcaatagaagcatcgggtcacccattcatatgggttgttc 3417468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 98; Significance: 4e-48; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 244 - 389
Target Start/End: Complemental strand, 13448547 - 13448402
Alignment:
Q  244 ccgaagggatttgaggagagaaacattggaaaaaagggtttgatcattaggggttgggccccacaggttaagatattgagccaccctgcggtggggggat 343  Q
    |||||||||||||| |||||||| || || || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  13448547 ccgaagggatttgaagagagaaatatcgggaagaagggtttgatcattaggggttgggccccacaggttaagatattgagccaccctgcagtggggggat 13448448  T
Q  344 ttatgacacattgtgggggaaactcaattgtagaggctgttggtgc 389  Q
    ||||||| ||||| ||||| |||||||  |||||||||||| ||||    
T  13448447 ttatgacgcattgcggggggaactcaaccgtagaggctgttagtgc 13448402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 242 - 384
Target Start/End: Complemental strand, 13455020 - 13454878
Alignment:
Q  242 tgccgaagggatttgaggagagaaacattggaaaaaagggtttgatcattaggggttgggccccacaggttaagatattgagccaccctgcggtgggggg 341  Q
    |||||||||||||||| |||| |||||| |  ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||    
T  13455020 tgccgaagggatttgaagagaaaaacatcgagaaaaagggtttgatcattaggggttgggccccacaagttaagatattgagtcaccctgcagtgggggg 13454921  T
Q  342 atttatgacacattgtgggggaaactcaattgtagaggctgtt 384  Q
    ||||||||| ||||| ||||| |||||||| ||||||||||||    
T  13454920 atttatgacgcattgcggggggaactcaatcgtagaggctgtt 13454878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 242 - 389
Target Start/End: Complemental strand, 13440386 - 13440239
Alignment:
Q  242 tgccgaagggatttgaggagagaaacattggaaaaaagggtttgatcattaggggttgggccccacaggttaagatattgagccaccctgcggtgggggg 341  Q
    |||| |||||||| || |||||||||||| | |  | |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||    
T  13440386 tgccaaagggattcgaagagagaaacattaggaggatgggtttgatcattaagggttgggccccacaagttaagatattgagccaccctgcggtgggggg 13440287  T
Q  342 atttatgacacattgtgggggaaactcaattgtagaggctgttggtgc 389  Q
    ||||||||| ||||| ||||| ||||||||||||||| ||||| ||||    
T  13440286 atttatgacgcattgcggggggaactcaattgtagagtctgttagtgc 13440239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 11 - 192
Target Start/End: Complemental strand, 13448780 - 13448599
Alignment:
Q  11 cagagaggggaaatgagggtgctgcgagtgagcacgagtcccttagctggctcaactcacagcaagttaactcagtggtgtacatatgttttggaagcat 110  Q
    |||||||||||||||||||||||| || || |||||||  ||| || |||||| | ||| ||  ||||||||||||| ||||||||||||||||||||||    
T  13448780 cagagaggggaaatgagggtgctgtgaatgtgcacgagagcctgagttggctcgattcagagagagttaactcagtgttgtacatatgttttggaagcat 13448681  T
Q  111 aaatcatttctttgacaaacaactatatgagattgcatgcgcagtagaaggaatgggtcacccattcatatgggttgttcct 192  Q
     ||  |||| | ||| ||||||||||| ||||| ||||| ||  |||||| |   |||||||||||||||||||||||||||    
T  13448680 caactatttttctgataaacaactatacgagatggcatgtgcgatagaagcatccggtcacccattcatatgggttgttcct 13448599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 8 - 192
Target Start/End: Complemental strand, 13440620 - 13440436
Alignment:
Q  8 aagcagagaggggaaatgagggtgctgcgagtgagcacgagtcccttagctggctcaactcacagcaagttaactcagtggtgtacatatgttttggaag 107  Q
    |||||||||||||||| ||||||| || ||    |||||| | | | || |||||| ||||| || |||||||||| ||| |||||||||||||||||||    
T  13440620 aagcagagaggggaaaggagggtgatgtgaacatgcacgaatgcatgagttggctcgactcagagaaagttaactcggtgttgtacatatgttttggaag 13440521  T
Q  108 cataaatcatttctttgacaaacaactatatgagattgcatgcgcagtagaaggaatgggtcacccattcatatgggttgttcct 192  Q
    ||| ||  |||||| ||| ||||||||||||||||| || |||||| |||||| |    ||||||||||||||||||||||||||    
T  13440520 catcaactatttctctgataaacaactatatgagatggcgtgcgcaatagaagcatctagtcacccattcatatgggttgttcct 13440436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 43 - 191
Target Start/End: Complemental strand, 13455219 - 13455071
Alignment:
Q  43 cacgagtcccttagctggctcaactcacagcaagttaactcagtggtgtacatatgttttggaagcataaatcatttctttgacaaacaactatatgaga 142  Q
    ||||||| ||| ||||||||  ||||| ||  ||||||||||||  |||||||||||||||||||||| ||| |||  | | | ||||||||||||||||    
T  13455219 cacgagtgcctgagctggcttgactcaaagagagttaactcagtattgtacatatgttttggaagcatcaattattcatctaataaacaactatatgaga 13455120  T
Q  143 ttgcatgcgcagtagaaggaatgggtcacccattcatatgggttgttcc 191  Q
    | |||||| || |||||| |   ||||| || |||||||||||||||||    
T  13455119 tggcatgctcactagaagcagcaggtcaaccgttcatatgggttgttcc 13455071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 4e-20; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 247 - 389
Target Start/End: Complemental strand, 48965510 - 48965368
Alignment:
Q  247 aagggatttgaggagagaaacattggaaaaaagggtttgatcattaggggttgggccccacaggttaagatattgagccaccctgcggtggggggattta 346  Q
    |||||||| || ||||||||||||||||| ||||||||||| |||||||||||||| || ||||||  |||  |||||||||| || ||||| |  ||||    
T  48965510 aagggattcgaagagagaaacattggaaagaagggtttgattattaggggttgggctccgcaggttctgattctgagccaccccgctgtgggtgccttta 48965411  T
Q  347 tgacacattgtgggggaaactcaattgtagaggctgttggtgc 389  Q
    |||| ||||||||  | ||||| |  || ||||||||||||||    
T  48965410 tgactcattgtggttggaactccacagtggaggctgttggtgc 48965368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 242 - 384
Target Start/End: Complemental strand, 48958333 - 48958188
Alignment:
Q  242 tgccgaagggatttgaggagagaaacattggaaaaaag---ggtttgatcattaggggttgggccccacaggttaagatattgagccaccctgcggtggg 338  Q
    ||||||| ||||| || ||||||||||||||||| |||   ||||||||||||||||| ||||||||||| |||  |||  ||||||||  ||| |||||    
T  48958333 tgccgaaaggattcgaagagagaaacattggaaagaagaaaggtttgatcattagggggtgggccccacaagttttgattctgagccacattgccgtggg 48958234  T
Q  339 gggatttatgacacattgtgggggaaactcaattgtagaggctgtt 384  Q
     | ||||||||||||||| ||| | ||||| | ||| |||||||||    
T  48958233 tgcatttatgacacattgcgggtggaactccactgtggaggctgtt 48958188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 242 - 356
Target Start/End: Complemental strand, 48961482 - 48961365
Alignment:
Q  242 tgccgaagggatttgaggagagaaacattggaaaaaag---ggtttgatcattaggggttgggccccacaggttaagatattgagccaccctgcggtggg 338  Q
    ||||||| |||||||| ||||||||||||| ||| |||   ||||||||||||| ||| ||||||||||| |||| |||  || ||||| | ||||||||    
T  48961482 tgccgaaaggatttgaagagagaaacattgaaaagaagaagggtttgatcattaaggggtgggccccacaagttatgatcctgggccacacagcggtggg 48961383  T
Q  339 gggatttatgacacattg 356  Q
     |  |||||||| |||||    
T  48961382 tgtgtttatgacgcattg 48961365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 284 - 360
Target Start/End: Original strand, 48912380 - 48912456
Alignment:
Q  284 tgatcattaggggttgggccccacaggttaagatattgagccaccctgcggtggggggatttatgacacattgtggg 360  Q
    |||| |||| ||||||||| |||||||||| |||  |||||||| | || ||||| | |||||||||||||||||||    
T  48912380 tgattattaagggttgggctccacaggttatgattctgagccacacagccgtgggtgcatttatgacacattgtggg 48912456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 146
Target Start/End: Complemental strand, 48958497 - 48958429
Alignment:
Q  78 taactcagtggtgtacatatgttttggaagcataaatcatttctttgacaaacaactatatgagattgc 146  Q
    |||||||||| |||||||||| ||||||||||||  | |||| | ||| |||||||| |||||||||||    
T  48958497 taactcagtgttgtacatatgctttggaagcatatgttatttatctgataaacaactttatgagattgc 48958429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 136 - 188
Target Start/End: Complemental strand, 48974401 - 48974349
Alignment:
Q  136 tatgagattgcatgcgcagtagaaggaatgggtcacccattcatatgggttgt 188  Q
    |||||||||||| ||||| |||||| |  |||||||| |||||||||||||||    
T  48974401 tatgagattgcaagcgcaatagaagcatcgggtcaccaattcatatgggttgt 48974349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 277 - 359
Target Start/End: Original strand, 12590200 - 12590282
Alignment:
Q  277 aagggtttgatcattaggggttgggccccacaggttaagatattgagccaccctgcggtggggggatttatgacacattgtgg 359  Q
    |||||||||||||||||||||||||||||||| || | |||  ||||||||  ||| ||||| |  |||||||||||||||||    
T  12590200 aagggtttgatcattaggggttgggccccacaagtaatgattatgagccacaatgcagtgggcgcgtttatgacacattgtgg 12590282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 242 - 359
Target Start/End: Original strand, 12483454 - 12483577
Alignment:
Q  242 tgccgaagggatttgaggagagaaacattgga------aaaaagggtttgatcattaggggttgggccccacaggttaagatattgagccaccctgcggt 335  Q
    ||||||||||||||||||||||||||||| ||      || | |||||| ||||| ||||| ||||| ||||||||   ||| |||||||||||||| ||    
T  12483454 tgccgaagggatttgaggagagaaacattagaaggaataagatgggtttaatcatcagggggtgggcaccacaggtactgattttgagccaccctgcagt 12483553  T
Q  336 ggggggatttatgacacattgtgg 359  Q
    ||| | ||||||||| || |||||    
T  12483554 gggtgcatttatgactcactgtgg 12483577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 277 - 360
Target Start/End: Original strand, 10521 - 10604
Alignment:
Q  277 aagggtttgatcattaggggttgggccccacaggttaagatattgagccaccctgcggtggggggatttatgacacattgtggg 360  Q
    ||||||||||| |||| |||||||||||| ||||||| |||  | |||||| |||  ||||| |  ||||||||||||||||||    
T  10521 aagggtttgattattaagggttgggcccctcaggttatgattctaagccacactgttgtgggtgcgtttatgacacattgtggg 10604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 277 - 327
Target Start/End: Original strand, 6539 - 6589
Alignment:
Q  277 aagggtttgatcattaggggttgggccccacaggttaagatattgagccac 327  Q
    ||||||||||| |||||||||||||| ||||| |||| ||| |||||||||    
T  6539 aagggtttgattattaggggttgggctccacaagttatgattttgagccac 6589  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 58 - 146
Target Start/End: Original strand, 12641287 - 12641375
Alignment:
Q  58 tggctcaactcacagcaagttaactcagtggtgtacatatgttttggaagcataaatcatttctttgacaaacaactatatgagattgc 146  Q
    |||||||| ||| |||||| ||| |||||| | |||||||||||||| |||||   | |||||| ||| |||||||| || ||||||||    
T  12641287 tggctcaattcaaagcaagataattcagtgttatacatatgttttgggagcatctcttatttctctgataaacaactttacgagattgc 12641375  T

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