View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11745_low_72 (Length: 396)

Name: NF11745_low_72
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11745_low_72
NF11745_low_72
[»] scaffold0591 (1 HSPs)
scaffold0591 (109-388)||(6277-6554)
[»] chr8 (25 HSPs)
chr8 (109-388)||(28643229-28643500)
chr8 (109-388)||(28652181-28652452)
chr8 (164-389)||(28699499-28699715)
chr8 (291-389)||(28725308-28725406)
chr8 (291-389)||(28710534-28710632)
chr8 (291-389)||(28717881-28717979)
chr8 (310-388)||(28625555-28625633)
chr8 (1-40)||(2749315-2749354)
chr8 (1-40)||(41720616-41720655)
chr8 (2-40)||(7128090-7128128)
chr8 (310-352)||(28739312-28739354)
chr8 (1-38)||(118177-118214)
chr8 (1-34)||(37675943-37675976)
chr8 (4-40)||(10706555-10706591)
chr8 (1-37)||(39300086-39300122)
chr8 (1-40)||(2261381-2261420)
chr8 (1-40)||(29265589-29265628)
chr8 (1-40)||(29454143-29454182)
chr8 (5-40)||(40267853-40267888)
chr8 (5-40)||(44000561-44000596)
chr8 (7-40)||(1043433-1043466)
chr8 (5-38)||(9497910-9497943)
chr8 (1-37)||(15231354-15231390)
chr8 (3-39)||(26988388-26988424)
chr8 (1-40)||(42194659-42194699)
[»] chr7 (21 HSPs)
chr7 (1-40)||(15954628-15954667)
chr7 (1-40)||(26605056-26605095)
chr7 (1-39)||(35291327-35291365)
chr7 (1-38)||(15716273-15716310)
chr7 (4-40)||(29606268-29606304)
chr7 (1-40)||(3214893-3214932)
chr7 (1-40)||(6791444-6791483)
chr7 (1-40)||(35358070-35358109)
chr7 (1-40)||(38665457-38665496)
chr7 (1-40)||(46575101-46575140)
chr7 (1-39)||(23406653-23406691)
chr7 (1-38)||(24952928-24952965)
chr7 (3-40)||(47642868-47642905)
chr7 (3-39)||(36533327-36533363)
chr7 (4-40)||(37504559-37504595)
chr7 (5-37)||(41968435-41968467)
chr7 (9-40)||(32529180-32529211)
chr7 (1-40)||(5215391-5215431)
chr7 (1-40)||(21919688-21919728)
chr7 (1-37)||(30077008-30077044)
chr7 (1-40)||(38882818-38882858)
[»] chr6 (14 HSPs)
chr6 (1-40)||(23416864-23416903)
chr6 (2-40)||(8549563-8549601)
chr6 (1-40)||(4509796-4509835)
chr6 (1-40)||(33574720-33574759)
chr6 (1-40)||(33574898-33574937)
chr6 (5-38)||(9687147-9687180)
chr6 (5-40)||(3141040-3141075)
chr6 (1-40)||(14779270-14779309)
chr6 (1-40)||(23069067-23069106)
chr6 (1-40)||(33574233-33574272)
chr6 (2-40)||(242885-242923)
chr6 (1-39)||(11763174-11763212)
chr6 (1-40)||(10965990-10966030)
chr6 (1-40)||(19474038-19474078)
[»] chr4 (24 HSPs)
chr4 (1-40)||(1857171-1857210)
chr4 (1-40)||(26118120-26118159)
chr4 (1-40)||(27990536-27990575)
chr4 (1-40)||(29582333-29582372)
chr4 (5-40)||(36631036-36631071)
chr4 (5-40)||(42177342-42177377)
chr4 (3-38)||(50608054-50608089)
chr4 (1-39)||(29364549-29364587)
chr4 (1-38)||(24979944-24979981)
chr4 (5-40)||(126949-126984)
chr4 (1-40)||(23058765-23058804)
chr4 (1-40)||(30348163-30348202)
chr4 (1-40)||(34829090-34829129)
chr4 (5-40)||(38008525-38008560)
chr4 (1-31)||(24535491-24535521)
chr4 (1-39)||(43147864-43147902)
chr4 (7-40)||(28835788-28835821)
chr4 (5-37)||(8256813-8256845)
chr4 (5-37)||(8270231-8270263)
chr4 (1-40)||(19527090-19527130)
chr4 (1-40)||(24566367-24566407)
chr4 (1-40)||(27950258-27950298)
chr4 (1-40)||(32570734-32570774)
chr4 (1-37)||(52607571-52607607)
[»] chr3 (34 HSPs)
chr3 (1-40)||(37520702-37520741)
chr3 (1-40)||(44653538-44653577)
chr3 (1-40)||(53289230-53289269)
chr3 (3-40)||(42621848-42621885)
chr3 (2-38)||(47746197-47746233)
chr3 (1-40)||(1129129-1129168)
chr3 (1-40)||(4817076-4817115)
chr3 (1-40)||(26884973-26885012)
chr3 (1-40)||(35501157-35501196)
chr3 (1-40)||(40478125-40478164)
chr3 (1-40)||(44379414-44379453)
chr3 (2-40)||(36220774-36220812)
chr3 (3-40)||(29388695-29388732)
chr3 (5-38)||(46507363-46507396)
chr3 (1-37)||(23456825-23456861)
chr3 (1-37)||(27045061-27045097)
chr3 (5-40)||(1021345-1021380)
chr3 (1-40)||(29806376-29806415)
chr3 (5-40)||(30349375-30349410)
chr3 (1-40)||(39987351-39987390)
chr3 (1-40)||(42479052-42479091)
chr3 (1-39)||(15997188-15997226)
chr3 (2-40)||(32636995-32637033)
chr3 (3-37)||(37127807-37127841)
chr3 (5-34)||(26012203-26012232)
chr3 (5-38)||(41217426-41217459)
chr3 (5-38)||(41982356-41982389)
chr3 (5-34)||(50258172-50258201)
chr3 (2-39)||(54428863-54428900)
chr3 (1-33)||(9507270-9507302)
chr3 (1-33)||(9515245-9515277)
chr3 (1-40)||(29698322-29698362)
chr3 (1-40)||(32121899-32121939)
chr3 (1-40)||(48795439-48795479)
[»] chr2 (21 HSPs)
chr2 (1-40)||(7673295-7673334)
chr2 (1-40)||(9589481-9589520)
chr2 (1-40)||(25331455-25331494)
chr2 (1-40)||(32602303-32602342)
chr2 (2-40)||(21404198-21404236)
chr2 (2-38)||(45157882-45157918)
chr2 (1-40)||(9122156-9122195)
chr2 (1-40)||(32401079-32401118)
chr2 (2-40)||(43439995-43440033)
chr2 (1-37)||(17451285-17451321)
chr2 (5-37)||(36754339-36754371)
chr2 (1-40)||(1580247-1580286)
chr2 (5-40)||(4740596-4740631)
chr2 (2-40)||(40495815-40495853)
chr2 (1-38)||(6945709-6945746)
chr2 (1-40)||(8333891-8333931)
chr2 (1-40)||(12182925-12182965)
chr2 (3-39)||(33493841-33493877)
chr2 (1-40)||(38073106-38073146)
chr2 (1-40)||(41555431-41555471)
chr2 (1-40)||(45690499-45690539)
[»] chr1 (30 HSPs)
chr1 (1-40)||(12105160-12105199)
chr1 (1-40)||(10408662-10408701)
chr1 (5-40)||(31821571-31821606)
chr1 (1-40)||(46362023-46362062)
chr1 (1-40)||(46641884-46641923)
chr1 (1-40)||(52345599-52345638)
chr1 (1-39)||(47544664-47544702)
chr1 (1-34)||(6966276-6966309)
chr1 (1-38)||(34038163-34038200)
chr1 (5-37)||(38718103-38718135)
chr1 (4-40)||(46235202-46235238)
chr1 (1-37)||(48760431-48760467)
chr1 (1-37)||(52861300-52861336)
chr1 (5-40)||(2249587-2249622)
chr1 (1-40)||(13202936-13202975)
chr1 (1-40)||(24003419-24003458)
chr1 (5-40)||(24230569-24230604)
chr1 (1-40)||(25702435-25702474)
chr1 (1-40)||(35873936-35873975)
chr1 (1-40)||(38261170-38261209)
chr1 (1-40)||(44264024-44264063)
chr1 (1-40)||(45622480-45622519)
chr1 (1-36)||(47693566-47693601)
chr1 (2-40)||(6526428-6526466)
chr1 (2-40)||(10348027-10348065)
chr1 (3-40)||(28624847-28624884)
chr1 (6-38)||(30572673-30572705)
chr1 (4-40)||(31530307-31530343)
chr1 (1-40)||(40054954-40054994)
chr1 (1-40)||(43916346-43916386)
[»] chr5 (23 HSPs)
chr5 (1-39)||(702317-702355)
chr5 (1-38)||(9604433-9604470)
chr5 (1-37)||(33210737-33210773)
chr5 (4-40)||(42597474-42597510)
chr5 (5-40)||(2852069-2852104)
chr5 (1-40)||(6260385-6260424)
chr5 (1-40)||(13127348-13127387)
chr5 (1-40)||(36427905-36427944)
chr5 (1-39)||(39816506-39816544)
chr5 (2-39)||(40563116-40563153)
chr5 (1-37)||(40803688-40803724)
chr5 (2-37)||(9910042-9910077)
chr5 (5-40)||(14434818-14434853)
chr5 (1-40)||(29960234-29960273)
chr5 (1-40)||(30753421-30753460)
chr5 (5-40)||(33678529-33678564)
chr5 (1-40)||(42486605-42486644)
chr5 (4-38)||(479676-479710)
chr5 (1-40)||(5512682-5512722)
chr5 (1-37)||(13119166-13119202)
chr5 (1-29)||(30753458-30753486)
chr5 (1-40)||(31588601-31588641)
chr5 (1-40)||(39939033-39939073)
[»] scaffold1319 (1 HSPs)
scaffold1319 (5-40)||(43-78)
[»] scaffold0923 (1 HSPs)
scaffold0923 (1-40)||(52-91)
[»] scaffold0667 (1 HSPs)
scaffold0667 (1-40)||(200-239)


Alignment Details
Target: scaffold0591 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: scaffold0591
Description:

Target: scaffold0591; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 109 - 388
Target Start/End: Original strand, 6277 - 6554
Alignment:
Q  109 tgaatatgaacaaccattcaatttgtcaaggtatttttcaaacttttgtaattgtttgtttataaaatagttgctccaatattgcaacatgaannnnnnn 208  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||           
T  6277 tgaatatgaacaaccattcaatttgtcgaggtatttttcaaacttttgtaattgttt----ataaaatagttgctccaatattgcaacatgaattttttt 6372  T
Q  209 gctagataagccttacaat--tgagactttttcaatctcaacagccagtttcttcatttattaggaaagtaattgaatacataatttctcgtttctattt 306  Q
    |||||||||||||| ||||  |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  6373 gctagataagccttccaatattgagactttttcaatctcaagagccagtttcttcatttattaggaaagtatttgaatacataatttctcgtttctattt 6472  T
Q  307 ttccattcttaggtctgagcttaataatgcaattcgagaagggggtgtcccattcaacatggttcatggcacacatgccttt 388  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6473 ttccattcttaggtctgagtttaataatgcaattcgagaagggggtgtcccattcaacatggttcatggcacacatgccttt 6554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 109 - 388
Target Start/End: Complemental strand, 28643500 - 28643229
Alignment:
Q  109 tgaatatgaacaaccattcaatttgtcaaggtatttttcaaacttttgtaattgtttgtttataaaatagttgctccaatattgcaacatgaannnnnnn 208  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||            
T  28643500 tgaatatgaacaaccattcaatttgtcgaggtatttttcaaacttttgtaattgttt----ataaaatagttgctccaatattgcaacatgatttttttt 28643405  T
Q  209 gctagataagccttacaattgagactttttcaatctcaacagccagtttcttcatttattaggaaagtaattgaatacataatttctcgtttctattttt 308  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  28643404 gctagataagccttccaattgagactttttcaatctcaacagccagtttcttcatttattaggaaagtaattgaatacataatttctcgtttctatttt- 28643306  T
Q  309 ccattcttaggtctgagcttaataatgcaattcgagaagggggtgtcccattcaacatggttcatggcacacatgccttt 388  Q
       ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28643305 ---ttcataggtctgagcttaataatgcaattcgagaagggggtgtcccattcaacatggttcatggcacacatgccttt 28643229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 109 - 388
Target Start/End: Complemental strand, 28652452 - 28652181
Alignment:
Q  109 tgaatatgaacaaccattcaatttgtcaaggtatttttcaaacttttgtaattgtttgtttataaaatagttgctccaatattgcaacatgaannnnnnn 208  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||            
T  28652452 tgaatatgaacaaccattcaatttgtcgaggtatttttcaaacttttgtaattgttt----ataaaatagttgctccaatattgcaacatgatttttttt 28652357  T
Q  209 gctagataagccttacaattgagactttttcaatctcaacagccagtttcttcatttattaggaaagtaattgaatacataatttctcgtttctattttt 308  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  28652356 gctagataagccttccaattgagactttttcaatctcaacagccagtttcttcatttattaggaaagtaattgaatacataatttctcgtttctatttt- 28652258  T
Q  309 ccattcttaggtctgagcttaataatgcaattcgagaagggggtgtcccattcaacatggttcatggcacacatgccttt 388  Q
       ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28652257 ---ttcataggtctgagcttaataatgcaattcgagaagggggtgtcccattcaacatggttcatggcacacatgccttt 28652181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 164 - 389
Target Start/End: Complemental strand, 28699715 - 28699499
Alignment:
Q  164 ttgtttataaaatagttgctccaatattgcaacatgaannnnnnn-gctagataagccttacaattgagactttttcaatctcaacagccagtttcttca 262  Q
    ||||||||||||| |||||||||| |||||||||||||        |||||||||||||| |||| ||||| ||||||||||||||||||||||||||||    
T  28699715 ttgtttataaaattgttgctccaacattgcaacatgaattttgtttgctagataagccttccaatagagaccttttcaatctcaacagccagtttcttca 28699616  T
Q  263 tttattaggaaagtaattgaatacataatttctcgtttctatttttccattcttaggtctgagcttaataatgcaattcgagaagggggtgtcccattca 362  Q
    |||||||||| ||||||| |||||||||||    ||||||       ||||||||||||||| ||||| |||||||||||||||||||||||||||||||    
T  28699615 tttattaggatagtaattaaatacataatt----gtttctt------cattcttaggtctgaccttaagaatgcaattcgagaagggggtgtcccattca 28699526  T
Q  363 acatggttcatggcacacatgcctttg 389  Q
    |||||||||||||||||||||||||||    
T  28699525 acatggttcatggcacacatgcctttg 28699499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 291 - 389
Target Start/End: Complemental strand, 28725406 - 28725308
Alignment:
Q  291 tttctcgtttctatttttccattcttaggtctgagcttaataatgcaattcgagaagggggtgtcccattcaacatggttcatggcacacatgcctttg 389  Q
    |||||||||||||||||| ||||||||||||  |||| |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||    
T  28725406 tttctcgtttctattttttcattcttaggtcccagctcaataatgcaattcgagaagggggtattccattcaacatggttcatggcacacatgcctttg 28725308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 291 - 389
Target Start/End: Complemental strand, 28710632 - 28710534
Alignment:
Q  291 tttctcgtttctatttttccattcttaggtctgagcttaataatgcaattcgagaagggggtgtcccattcaacatggttcatggcacacatgcctttg 389  Q
    |||||||||||| ||||| |||||||||| |||||||||| ||| ||||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  28710632 tttctcgtttctgttttttcattcttaggcctgagcttaagaatacaattcgagaagggggtgtcccattcaacactgttcatggcacacatgcctttg 28710534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 291 - 389
Target Start/End: Complemental strand, 28717979 - 28717881
Alignment:
Q  291 tttctcgtttctatttttccattcttaggtctgagcttaataatgcaattcgagaagggggtgtcccattcaacatggttcatggcacacatgcctttg 389  Q
    |||||||||||| ||||| |||||||||| |||||||||| ||| ||||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  28717979 tttctcgtttctgttttttcattcttaggcctgagcttaagaatacaattcgagaagggggtgtcccattcaacactgttcatggcacacatgcctttg 28717881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 310 - 388
Target Start/End: Complemental strand, 28625633 - 28625555
Alignment:
Q  310 cattcttaggtctgagcttaataatgcaattcgagaagggggtgtcccattcaacatggttcatggcacacatgccttt 388  Q
    |||||||| ||| | |||||| |||||||||||| |||| ||||||||||||||||| |||||||||||||||||||||    
T  28625633 cattcttaagtccgggcttaagaatgcaattcgaaaaggcggtgtcccattcaacattgttcatggcacacatgccttt 28625555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 2749354 - 2749315
Alignment:
Q  1 ccggtacacctcattttgtgagtgtaccgtagaagttccc 40  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  2749354 ccggtacacctcattttgtgagtttaccgtagaagttccc 2749315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 41720616 - 41720655
Alignment:
Q  1 ccggtacacctcattttgtgagtgtaccgtagaagttccc 40  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  41720616 ccggtatacctcattttgtgagtgtaccgtagaagttccc 41720655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 40
Target Start/End: Complemental strand, 7128128 - 7128090
Alignment:
Q  2 cggtacacctcattttgtgagtgtaccgtagaagttccc 40  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  7128128 cggtacacctcattttgtgagtgtaccatagaagttccc 7128090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 310 - 352
Target Start/End: Complemental strand, 28739354 - 28739312
Alignment:
Q  310 cattcttaggtctgagcttaataatgcaattcgagaagggggt 352  Q
    |||| ||||||| ||||||||||||||||||||||||||||||    
T  28739354 catttttaggtccgagcttaataatgcaattcgagaagggggt 28739312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 118177 - 118214
Alignment:
Q  1 ccggtacacctcattttgtgagtgtaccgtagaagttc 38  Q
    |||||||||||||||||||||||||||| |||||||||    
T  118177 ccggtacacctcattttgtgagtgtaccatagaagttc 118214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 37675976 - 37675943
Alignment:
Q  1 ccggtacacctcattttgtgagtgtaccgtagaa 34  Q
    ||||||||||||||||||||||||||||||||||    
T  37675976 ccggtacacctcattttgtgagtgtaccgtagaa 37675943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 40
Target Start/End: Complemental strand, 10706591 - 10706555
Alignment:
Q  4 gtacacctcattttgtgagtgtaccgtagaagttccc 40  Q
    |||||||||| ||||||||||||||||||||||||||    
T  10706591 gtacacctcactttgtgagtgtaccgtagaagttccc 10706555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 39300122 - 39300086
Alignment:
Q  1 ccggtacacctcattttgtgagtgtaccgtagaagtt 37  Q
    ||||||||||||||||||||||||||||||| |||||    
T  39300122 ccggtacacctcattttgtgagtgtaccgtaaaagtt 39300086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 2261381 - 2261420
Alignment:
Q  1 ccggtacacctcattttgtgagtgtaccgtagaagttccc 40  Q
    ||||||||||||| |||||||||||||| |||||||||||    
T  2261381 ccggtacacctcactttgtgagtgtaccatagaagttccc 2261420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 29265628 - 29265589
Alignment:
Q  1 ccggtacacctcattttgtgagtgtaccgtagaagttccc 40  Q
    ||||||||||||| ||||||||||||| ||||||||||||    
T  29265628 ccggtacacctcactttgtgagtgtacagtagaagttccc 29265589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 29454182 - 29454143
Alignment:
Q  1 ccggtacacctcattttgtgagtgtaccgtagaagttccc 40  Q
    ||||||||||| | ||||||||||||||||||||||||||    
T  29454182 ccggtacaccttactttgtgagtgtaccgtagaagttccc 29454143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 5 - 40
Target Start/End: Original strand, 40267853 - 40267888
Alignment:
Q  5 tacacctcattttgtgagtgtaccgtagaagttccc 40  Q
    ||||||||||||||| ||||||||||||||||||||    
T  40267853 tacacctcattttgtaagtgtaccgtagaagttccc 40267888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 5 - 40
Target Start/End: Complemental strand, 44000596 - 44000561
Alignment:
Q  5 tacacctcattttgtgagtgtaccgtagaagttccc 40  Q
    ||||||||||||||||||||||||||||||| ||||    
T  44000596 tacacctcattttgtgagtgtaccgtagaagatccc 44000561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 40
Target Start/End: Original strand, 1043433 - 1043466
Alignment:
Q  7 cacctcattttgtgagtgtaccgtagaagttccc 40  Q
    ||||||| ||||||||||||||||||||||||||    
T  1043433 cacctcactttgtgagtgtaccgtagaagttccc 1043466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 38
Target Start/End: Original strand, 9497910 - 9497943
Alignment:
Q  5 tacacctcattttgtgagtgtaccgtagaagttc 38  Q
    |||||||||| |||||||||||||||||||||||    
T  9497910 tacacctcatcttgtgagtgtaccgtagaagttc 9497943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 15231354 - 15231390
Alignment:
Q  1 ccggtacacctcattttgtgagtgtaccgtagaagtt 37  Q
    ||||||||||||| ||| |||||||||||||||||||    
T  15231354 ccggtacacctcactttatgagtgtaccgtagaagtt 15231390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 39
Target Start/End: Complemental strand, 26988424 - 26988388
Alignment:
Q  3 ggtacacctcattttgtgagtgtaccgtagaagttcc 39  Q
    |||||||||||| |||||||||||||||| |||||||    
T  26988424 ggtacacctcatcttgtgagtgtaccgtaaaagttcc 26988388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 42194699 - 42194659
Alignment:
Q  1 ccggtacacctcattttgtgag-tgtaccgtagaagttccc 40  Q
    ||||||||||||||||||| || ||||||||||||||||||    
T  42194699 ccggtacacctcattttgttagatgtaccgtagaagttccc 42194659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 15954628 - 15954667
Alignment:
Q  1 ccggtacacctcattttgtgagtgtaccgtagaagttccc 40  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  15954628 ccggtacacctcattttgtgagtgtaccgtagaagttccc 15954667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 26605095 - 26605056
Alignment:
Q  1 ccggtacacctcattttgtgagtgtaccgtagaagttccc 40  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  26605095 ccggtacacctcattttgtgagtgtaccgtagaagttccc 26605056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 35291365 - 35291327
Alignment:
Q  1 ccggtacacctcattttgtgagtgtaccgtagaagttcc 39  Q
    |||||||||||||||||||||||||||||||||||||||    
T  35291365 ccggtacacctcattttgtgagtgtaccgtagaagttcc 35291327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 15716273 - 15716310
Alignment:
Q  1 ccggtacacctcattttgtgagtgtaccgtagaagttc 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  15716273 ccggtacacctcattttgtgagtgtaccgtagaagttc 15716310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 4 - 40
Target Start/End: Complemental strand, 29606304 - 29606268
Alignment:
Q  4 gtacacctcattttgtgagtgtaccgtagaagttccc 40  Q
    |||||||||||||||||||||||||||||||||||||    
T  29606304 gtacacctcattttgtgagtgtaccgtagaagttccc 29606268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 3214893 - 3214932
Alignment:
Q  1 ccggtacacctcattttgtgagtgtaccgtagaagttccc 40  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  3214893 ccggtacacctcactttgtgagtgtaccgtagaagttccc 3214932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 6791483 - 6791444
Alignment:
Q  1 ccggtacacctcattttgtgagtgtaccgtagaagttccc 40  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  6791483 ccggtacacctcattttgtaagtgtaccgtagaagttccc 6791444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 35358070 - 35358109
Alignment:
Q  1 ccggtacacctcattttgtgagtgtaccgtagaagttccc 40  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  35358070 ccggtacacctcattttgtgagtgtaccgtagaaattccc 35358109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 38665496 - 38665457
Alignment:
Q  1 ccggtacacctcattttgtgagtgtaccgtagaagttccc 40  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  38665496 ccggtacacttcattttgtgagtgtaccgtagaagttccc 38665457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 46575140 - 46575101
Alignment:
Q  1 ccggtacacctcattttgtgagtgtaccgtagaagttccc 40  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  46575140 ccggtacacctcattttgtgaatgtaccgtagaagttccc 46575101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 23406691 - 23406653
Alignment:
Q  1 ccggtacacctcattttgtgagtgtaccgtagaagttcc 39  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  23406691 ccggtacacctcattttgtgagtgtaccgtataagttcc 23406653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 24952965 - 24952928
Alignment:
Q  1 ccggtacacctcattttgtgagtgtaccgtagaagttc 38  Q
    |||||||| |||||||||||||||||||||||||||||    
T  24952965 ccggtacatctcattttgtgagtgtaccgtagaagttc 24952928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 3 - 40
Target Start/End: Original strand, 47642868 - 47642905
Alignment:
Q  3 ggtacacctcattttgtgagtgtaccgtagaagttccc 40  Q
    |||||| |||||||||||||||||||||||||||||||    
T  47642868 ggtacatctcattttgtgagtgtaccgtagaagttccc 47642905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 39
Target Start/End: Complemental strand, 36533363 - 36533327
Alignment:
Q  3 ggtacacctcattttgtgagtgtaccgtagaagttcc 39  Q
    |||||||||||| ||||||||||||||||||||||||    
T  36533363 ggtacacctcatcttgtgagtgtaccgtagaagttcc 36533327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 40
Target Start/End: Complemental strand, 37504595 - 37504559
Alignment:
Q  4 gtacacctcattttgtgagtgtaccgtagaagttccc 40  Q
    |||||||||||||||||||||||||||||||| ||||    
T  37504595 gtacacctcattttgtgagtgtaccgtagaagatccc 37504559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 37
Target Start/End: Complemental strand, 41968467 - 41968435
Alignment:
Q  5 tacacctcattttgtgagtgtaccgtagaagtt 37  Q
    |||||||||||||||||||||||||||||||||    
T  41968467 tacacctcattttgtgagtgtaccgtagaagtt 41968435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 9 - 40
Target Start/End: Complemental strand, 32529211 - 32529180
Alignment:
Q  9 cctcattttgtgagtgtaccgtagaagttccc 40  Q
    ||||||||||||||||||||||||||||||||    
T  32529211 cctcattttgtgagtgtaccgtagaagttccc 32529180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 5215391 - 5215431
Alignment:
Q  1 ccggtacacctcattttgtga-gtgtaccgtagaagttccc 40  Q
    ||||||||||||| ||||||| |||||||||||||||||||    
T  5215391 ccggtacacctcaatttgtgatgtgtaccgtagaagttccc 5215431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 21919728 - 21919688
Alignment:
Q  1 ccggtacacctcattttgtgag-tgtaccgtagaagttccc 40  Q
    ||||||||||||| |||||||| ||||||||||||||||||    
T  21919728 ccggtacacctcaatttgtgaggtgtaccgtagaagttccc 21919688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 30077008 - 30077044
Alignment:
Q  1 ccggtacacctcattttgtgagtgtaccgtagaagtt 37  Q
    |||| |||||||||||||||||||||||||| |||||    
T  30077008 ccggcacacctcattttgtgagtgtaccgtaaaagtt 30077044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 38882858 - 38882818
Alignment:
Q  1 ccggtacacctcattttgtgag-tgtaccgtagaagttccc 40  Q
    ||||||||||||||||||| || ||||||||||||||||||    
T  38882858 ccggtacacctcattttgttaggtgtaccgtagaagttccc 38882818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 23416864 - 23416903
Alignment:
Q  1 ccggtacacctcattttgtgagtgtaccgtagaagttccc 40  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  23416864 ccggtacacctcattttgtgagtgtaccgtagaagttccc 23416903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 2 - 40
Target Start/End: Complemental strand, 8549601 - 8549563
Alignment:
Q  2 cggtacacctcattttgtgagtgtaccgtagaagttccc 40  Q
    |||||||||||||||||||||||||||||||||||||||    
T  8549601 cggtacacctcattttgtgagtgtaccgtagaagttccc 8549563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 4509796 - 4509835
Alignment:
Q  1 ccggtacacctcattttgtgagtgtaccgtagaagttccc 40  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  4509796 ccggtacacctcactttgtgagtgtaccgtagaagttccc 4509835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 33574720 - 33574759
Alignment:
Q  1 ccggtacacctcattttgtgagtgtaccgtagaagttccc 40  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  33574720 ccggtacacctcactttgtgagtgtaccgtagaagttccc 33574759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 33574898 - 33574937
Alignment:
Q  1 ccggtacacctcattttgtgagtgtaccgtagaagttccc 40  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  33574898 ccggtacacctcactttgtgagtgtaccgtagaagttccc 33574937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 5 - 38
Target Start/End: Original strand, 9687147 - 9687180
Alignment:
Q  5 tacacctcattttgtgagtgtaccgtagaagttc 38  Q
    ||||||||||||||||||||||||||||||||||    
T  9687147 tacacctcattttgtgagtgtaccgtagaagttc 9687180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 5 - 40
Target Start/End: Complemental strand, 3141075 - 3141040
Alignment:
Q  5 tacacctcattttgtgagtgtaccgtagaagttccc 40  Q
    |||||||||||||||||||||||| |||||||||||    
T  3141075 tacacctcattttgtgagtgtaccatagaagttccc 3141040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 14779270 - 14779309
Alignment:
Q  1 ccggtacacctcattttgtgagtgtaccgtagaagttccc 40  Q
    ||||||| ||||||||||||||||||| ||||||||||||    
T  14779270 ccggtacccctcattttgtgagtgtactgtagaagttccc 14779309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 23069067 - 23069106
Alignment:
Q  1 ccggtacacctcattttgtgagtgtaccgtagaagttccc 40  Q
    ||||||||||||| ||||||||||||||||| ||||||||    
T  23069067 ccggtacacctcactttgtgagtgtaccgtaaaagttccc 23069106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 33574272 - 33574233
Alignment:
Q  1 ccggtacacctcattttgtgagtgtaccgtagaagttccc 40  Q
    ||||||||||||||||||||||||||||||| || |||||    
T  33574272 ccggtacacctcattttgtgagtgtaccgtataaattccc 33574233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 40
Target Start/End: Complemental strand, 242923 - 242885
Alignment:
Q  2 cggtacacctcattttgtgagtgtaccgtagaagttccc 40  Q
    ||||||||||||| || ||||||||||||||||||||||    
T  242923 cggtacacctcatcttatgagtgtaccgtagaagttccc 242885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 11763212 - 11763174
Alignment:
Q  1 ccggtacacctcattttgtgagtgtaccgtagaagttcc 39  Q
    ||||||||||||| | |||||||||||||||||||||||    
T  11763212 ccggtacacctcactctgtgagtgtaccgtagaagttcc 11763174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 10965990 - 10966030
Alignment:
Q  1 ccggtacacctcattttgtgag-tgtaccgtagaagttccc 40  Q
    ||||||||||||| |||||||| ||||||||||||||||||    
T  10965990 ccggtacacctcaatttgtgaggtgtaccgtagaagttccc 10966030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 19474038 - 19474078
Alignment:
Q  1 ccggtacacctcattttgtgag-tgtaccgtagaagttccc 40  Q
    ||||||||||||| |||||||| ||||||||||||||||||    
T  19474038 ccggtacacctcaatttgtgaggtgtaccgtagaagttccc 19474078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 1857171 - 1857210
Alignment:
Q  1 ccggtacacctcattttgtgagtgtaccgtagaagttccc 40  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  1857171 ccggtacacctcattttgtgagtgtaccgtagaagttccc 1857210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 26118120 - 26118159
Alignment:
Q  1 ccggtacacctcattttgtgagtgtaccgtagaagttccc 40  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  26118120 ccggtacacctcatcttgtgagtgtaccgtagaagttccc 26118159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 27990575 - 27990536
Alignment:
Q  1 ccggtacacctcattttgtgagtgtaccgtagaagttccc 40  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  27990575 ccggtacacctcattttgtgagtgtatcgtagaagttccc 27990536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 29582333 - 29582372
Alignment:
Q  1 ccggtacacctcattttgtgagtgtaccgtagaagttccc 40  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  29582333 ccggtacacctcaatttgtgagtgtaccgtagaagttccc 29582372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 5 - 40
Target Start/End: Complemental strand, 36631071 - 36631036
Alignment:
Q  5 tacacctcattttgtgagtgtaccgtagaagttccc 40  Q
    ||||||||||||||||||||||||||||||||||||    
T  36631071 tacacctcattttgtgagtgtaccgtagaagttccc 36631036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 5 - 40
Target Start/End: Complemental strand, 42177377 - 42177342
Alignment:
Q  5 tacacctcattttgtgagtgtaccgtagaagttccc 40  Q
    ||||||||||||||||||||||||||||||||||||    
T  42177377 tacacctcattttgtgagtgtaccgtagaagttccc 42177342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 3 - 38
Target Start/End: Original strand, 50608054 - 50608089
Alignment:
Q  3 ggtacacctcattttgtgagtgtaccgtagaagttc 38  Q
    ||||||||||||||||||||||||||||||||||||    
T  50608054 ggtacacctcattttgtgagtgtaccgtagaagttc 50608089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 29364549 - 29364587
Alignment:
Q  1 ccggtacacctcattttgtgagtgtaccgtagaagttcc 39  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  29364549 ccggtacacctcattttgtgagtgtacagtagaagttcc 29364587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 24979981 - 24979944
Alignment:
Q  1 ccggtacacctcattttgtgagtgtaccgtagaagttc 38  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  24979981 ccggtacaccttattttgtgagtgtaccgtagaagttc 24979944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 5 - 40
Target Start/End: Original strand, 126949 - 126984
Alignment:
Q  5 tacacctcattttgtgagtgtaccgtagaagttccc 40  Q
    ||||||||||||| ||||||||||||||||||||||    
T  126949 tacacctcattttatgagtgtaccgtagaagttccc 126984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 23058804 - 23058765
Alignment:
Q  1 ccggtacacctcattttgtgagtgtaccgtagaagttccc 40  Q
    |||||||| |||| ||||||||||||||||||||||||||    
T  23058804 ccggtacatctcactttgtgagtgtaccgtagaagttccc 23058765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 30348202 - 30348163
Alignment:
Q  1 ccggtacacctcattttgtgagtgtaccgtagaagttccc 40  Q
    ||||||||||||||||||||| |||||||||| |||||||    
T  30348202 ccggtacacctcattttgtgattgtaccgtagtagttccc 30348163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 34829090 - 34829129
Alignment:
Q  1 ccggtacacctcattttgtgagtgtaccgtagaagttccc 40  Q
    |||||||||||||| ||||||||||||||||||| |||||    
T  34829090 ccggtacacctcatcttgtgagtgtaccgtagaaattccc 34829129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 5 - 40
Target Start/End: Original strand, 38008525 - 38008560
Alignment:
Q  5 tacacctcattttgtgagtgtaccgtagaagttccc 40  Q
    |||||||||||||||||||| |||||||||||||||    
T  38008525 tacacctcattttgtgagtgcaccgtagaagttccc 38008560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 24535521 - 24535491
Alignment:
Q  1 ccggtacacctcattttgtgagtgtaccgta 31  Q
    |||||||||||||||||||||||||||||||    
T  24535521 ccggtacacctcattttgtgagtgtaccgta 24535491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 43147864 - 43147902
Alignment:
Q  1 ccggtacacctcattttgtgagtgtaccgtagaagttcc 39  Q
    |||||| ||||||| ||||||||||||||||||||||||    
T  43147864 ccggtatacctcatcttgtgagtgtaccgtagaagttcc 43147902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 40
Target Start/End: Complemental strand, 28835821 - 28835788
Alignment:
Q  7 cacctcattttgtgagtgtaccgtagaagttccc 40  Q
    ||||||||||||||||||||||||| ||||||||    
T  28835821 cacctcattttgtgagtgtaccgtaaaagttccc 28835788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 37
Target Start/End: Original strand, 8256813 - 8256845
Alignment:
Q  5 tacacctcattttgtgagtgtaccgtagaagtt 37  Q
    ||||||||||||||||||||||||||| |||||    
T  8256813 tacacctcattttgtgagtgtaccgtaaaagtt 8256845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 37
Target Start/End: Original strand, 8270231 - 8270263
Alignment:
Q  5 tacacctcattttgtgagtgtaccgtagaagtt 37  Q
    ||||||||||||||||||||||||||| |||||    
T  8270231 tacacctcattttgtgagtgtaccgtaaaagtt 8270263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 19527090 - 19527130
Alignment:
Q  1 ccggtacacctcattttgtgag-tgtaccgtagaagttccc 40  Q
    ||||||||||||| |||||||| ||||||||||||||||||    
T  19527090 ccggtacacctcaatttgtgaggtgtaccgtagaagttccc 19527130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 24566407 - 24566367
Alignment:
Q  1 ccggtacacctcattttgtgag-tgtaccgtagaagttccc 40  Q
    ||||||||||||||||||| || ||||||||||||||||||    
T  24566407 ccggtacacctcattttgttaggtgtaccgtagaagttccc 24566367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 27950298 - 27950258
Alignment:
Q  1 ccggtacacctcattttgtgag-tgtaccgtagaagttccc 40  Q
    ||||||||||||| |||||||| ||||||||||||||||||    
T  27950298 ccggtacacctcaatttgtgaggtgtaccgtagaagttccc 27950258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 32570734 - 32570774
Alignment:
Q  1 ccggtacacctcattttgtgag-tgtaccgtagaagttccc 40  Q
    ||||||||||||| |||||||| ||||||||||||||||||    
T  32570734 ccggtacacctcaatttgtgaggtgtaccgtagaagttccc 32570774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 52607607 - 52607571
Alignment:
Q  1 ccggtacacctcattttgtgagtgtaccgtagaagtt 37  Q
    |||||||||||||| |||||| |||||||||||||||    
T  52607607 ccggtacacctcatcttgtgaatgtaccgtagaagtt 52607571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 34)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 37520741 - 37520702
Alignment:
Q  1 ccggtacacctcattttgtgagtgtaccgtagaagttccc 40  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  37520741 ccggtacacctcattttgtgagtgtaccgtagaagttccc 37520702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 44653538 - 44653577
Alignment:
Q  1 ccggtacacctcattttgtgagtgtaccgtagaagttccc 40  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  44653538 ccggtacacctcattttgtgagtgtaccgtagaagttccc 44653577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 53289269 - 53289230
Alignment:
Q  1 ccggtacacctcattttgtgagtgtaccgtagaagttccc 40  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  53289269 ccggtacacctcattttgtgagtgtaccgtagaagttccc 53289230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 40
Target Start/End: Complemental strand, 42621885 - 42621848
Alignment:
Q  3 ggtacacctcattttgtgagtgtaccgtagaagttccc 40  Q
    ||||||||||||||||||||||||||||||||||||||    
T  42621885 ggtacacctcattttgtgagtgtaccgtagaagttccc 42621848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 47746197 - 47746233
Alignment:
Q  2 cggtacacctcattttgtgagtgtaccgtagaagttc 38  Q
    |||||||||||||||||||||||||||||||||||||    
T  47746197 cggtacacctcattttgtgagtgtaccgtagaagttc 47746233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 1129168 - 1129129
Alignment:
Q  1 ccggtacacctcattttgtgagtgtaccgtagaagttccc 40  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  1129168 ccggtacacctcactttgtgagtgtaccgtagaagttccc 1129129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 4817115 - 4817076
Alignment:
Q  1 ccggtacacctcattttgtgagtgtaccgtagaagttccc 40  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  4817115 ccggtacacctcattttgtgagtgtaccgtagaaattccc 4817076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 26885012 - 26884973
Alignment:
Q  1 ccggtacacctcattttgtgagtgtaccgtagaagttccc 40  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  26885012 ccggtacacctcatcttgtgagtgtaccgtagaagttccc 26884973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 35501157 - 35501196
Alignment:
Q  1 ccggtacacctcattttgtgagtgtaccgtagaagttccc 40  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  35501157 ccggtacacctcattttgtgagtgtaccatagaagttccc 35501196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 40478125 - 40478164
Alignment:
Q  1 ccggtacacctcattttgtgagtgtaccgtagaagttccc 40  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  40478125 ccggtacacctcactttgtgagtgtaccgtagaagttccc 40478164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 44379453 - 44379414
Alignment:
Q  1 ccggtacacctcattttgtgagtgtaccgtagaagttccc 40  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  44379453 ccggtacacctcactttgtgagtgtaccgtagaagttccc 44379414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 40
Target Start/End: Original strand, 36220774 - 36220812
Alignment:
Q  2 cggtacacctcattttgtgagtgtaccgtagaagttccc 40  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  36220774 cggtacacctcactttgtgagtgtaccgtagaagttccc 36220812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 3 - 40
Target Start/End: Complemental strand, 29388732 - 29388695
Alignment:
Q  3 ggtacacctcattttgtgagtgtaccgtagaagttccc 40  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  29388732 ggtacacctcattttgtgagtataccgtagaagttccc 29388695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 5 - 38
Target Start/End: Complemental strand, 46507396 - 46507363
Alignment:
Q  5 tacacctcattttgtgagtgtaccgtagaagttc 38  Q
    ||||||||||||||||||||||||||||||||||    
T  46507396 tacacctcattttgtgagtgtaccgtagaagttc 46507363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 23456825 - 23456861
Alignment:
Q  1 ccggtacacctcattttgtgagtgtaccgtagaagtt 37  Q
    ||||||||||||| |||||||||||||||||||||||    
T  23456825 ccggtacacctcactttgtgagtgtaccgtagaagtt 23456861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 27045061 - 27045097
Alignment:
Q  1 ccggtacacctcattttgtgagtgtaccgtagaagtt 37  Q
    ||||| |||||||||||||||||||||||||||||||    
T  27045061 ccggtgcacctcattttgtgagtgtaccgtagaagtt 27045097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 5 - 40
Target Start/End: Original strand, 1021345 - 1021380
Alignment:
Q  5 tacacctcattttgtgagtgtaccgtagaagttccc 40  Q
    |||||||||||||||||||||| |||||||||||||    
T  1021345 tacacctcattttgtgagtgtatcgtagaagttccc 1021380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 29806376 - 29806415
Alignment:
Q  1 ccggtacacctcattttgtgagtgtaccgtagaagttccc 40  Q
    ||||||||||||| |||| |||||||||||||||||||||    
T  29806376 ccggtacacctcaatttgcgagtgtaccgtagaagttccc 29806415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 5 - 40
Target Start/End: Original strand, 30349375 - 30349410
Alignment:
Q  5 tacacctcattttgtgagtgtaccgtagaagttccc 40  Q
    ||||| ||||||||||||||||||||||||||||||    
T  30349375 tacacttcattttgtgagtgtaccgtagaagttccc 30349410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 39987390 - 39987351
Alignment:
Q  1 ccggtacacctcattttgtgagtgtaccgtagaagttccc 40  Q
    ||||||||||||||||| ||||||| ||||||||||||||    
T  39987390 ccggtacacctcattttatgagtgtcccgtagaagttccc 39987351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 42479052 - 42479091
Alignment:
Q  1 ccggtacacctcattttgtgagtgtaccgtagaagttccc 40  Q
    ||||||||||| ||||||||| ||||||||||||||||||    
T  42479052 ccggtacaccttattttgtgaatgtaccgtagaagttccc 42479091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 15997188 - 15997226
Alignment:
Q  1 ccggtacacctcattttgtgagtgtaccgtagaagttcc 39  Q
    |||||||||||||| || |||||||||||||||||||||    
T  15997188 ccggtacacctcatcttatgagtgtaccgtagaagttcc 15997226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 40
Target Start/End: Original strand, 32636995 - 32637033
Alignment:
Q  2 cggtacacctcattttgtgagtgtaccgtagaagttccc 40  Q
    |||||||||||| |||||||||||||||||||| |||||    
T  32636995 cggtacacctcactttgtgagtgtaccgtagaaattccc 32637033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 37
Target Start/End: Complemental strand, 37127841 - 37127807
Alignment:
Q  3 ggtacacctcattttgtgagtgtaccgtagaagtt 37  Q
    ||||||||||||||| |||||||||||||||||||    
T  37127841 ggtacacctcattttatgagtgtaccgtagaagtt 37127807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 34
Target Start/End: Complemental strand, 26012232 - 26012203
Alignment:
Q  5 tacacctcattttgtgagtgtaccgtagaa 34  Q
    ||||||||||||||||||||||||||||||    
T  26012232 tacacctcattttgtgagtgtaccgtagaa 26012203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 38
Target Start/End: Original strand, 41217426 - 41217459
Alignment:
Q  5 tacacctcattttgtgagtgtaccgtagaagttc 38  Q
    ||||||| ||||||||||||||||||||||||||    
T  41217426 tacaccttattttgtgagtgtaccgtagaagttc 41217459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 38
Target Start/End: Original strand, 41982356 - 41982389
Alignment:
Q  5 tacacctcattttgtgagtgtaccgtagaagttc 38  Q
    ||||||||| ||||||||||||||||||||||||    
T  41982356 tacacctcactttgtgagtgtaccgtagaagttc 41982389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 34
Target Start/End: Original strand, 50258172 - 50258201
Alignment:
Q  5 tacacctcattttgtgagtgtaccgtagaa 34  Q
    ||||||||||||||||||||||||||||||    
T  50258172 tacacctcattttgtgagtgtaccgtagaa 50258201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 39
Target Start/End: Original strand, 54428863 - 54428900
Alignment:
Q  2 cggtacacctcattttgtgagtgtaccgtagaagttcc 39  Q
    |||||||||||||||| ||||||||| |||||||||||    
T  54428863 cggtacacctcattttatgagtgtacagtagaagttcc 54428900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 9507270 - 9507302
Alignment:
Q  1 ccggtacacctcattttgtgagtgtaccgtaga 33  Q
    |||||||||||||| ||||||||||||||||||    
T  9507270 ccggtacacctcatcttgtgagtgtaccgtaga 9507302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 9515245 - 9515277
Alignment:
Q  1 ccggtacacctcattttgtgagtgtaccgtaga 33  Q
    |||||||||||||| ||||||||||||||||||    
T  9515245 ccggtacacctcatcttgtgagtgtaccgtaga 9515277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 29698362 - 29698322
Alignment:
Q  1 ccggtacacctcattttgtgag-tgtaccgtagaagttccc 40  Q
    ||||||||||||| |||||||| ||||||||||||||||||    
T  29698362 ccggtacacctcaatttgtgaggtgtaccgtagaagttccc 29698322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 32121939 - 32121899
Alignment:
Q  1 ccggtacacctcattttgtgag-tgtaccgtagaagttccc 40  Q
    ||||||||||||| |||||||| ||||||||||||||||||    
T  32121939 ccggtacacctcactttgtgaggtgtaccgtagaagttccc 32121899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 48795479 - 48795439
Alignment:
Q  1 ccggtacacctcattttgtgag-tgtaccgtagaagttccc 40  Q
    ||||||||||||| |||||||| ||||||||||||||||||    
T  48795479 ccggtacacctcaatttgtgaggtgtaccgtagaagttccc 48795439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 7673334 - 7673295
Alignment:
Q  1 ccggtacacctcattttgtgagtgtaccgtagaagttccc 40  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  7673334 ccggtacacctcattttgtgagtgtaccgtagaagttccc 7673295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 9589481 - 9589520
Alignment:
Q  1 ccggtacacctcattttgtgagtgtaccgtagaagttccc 40  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  9589481 ccggtacacctcattttgtgagtgtaccgtagaagttccc 9589520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 25331494 - 25331455
Alignment:
Q  1 ccggtacacctcattttgtgagtgtaccgtagaagttccc 40  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  25331494 ccggtacacctcattttgtgagtgtaccgtagaagttccc 25331455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 32602342 - 32602303
Alignment:
Q  1 ccggtacacctcattttgtgagtgtaccgtagaagttccc 40  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  32602342 ccggtacacctcattttgtgagtgtaccgtagaagttccc 32602303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 2 - 40
Target Start/End: Complemental strand, 21404236 - 21404198
Alignment:
Q  2 cggtacacctcattttgtgagtgtaccgtagaagttccc 40  Q
    |||||||||||||||||||||||||||||||||||||||    
T  21404236 cggtacacctcattttgtgagtgtaccgtagaagttccc 21404198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 45157882 - 45157918
Alignment:
Q  2 cggtacacctcattttgtgagtgtaccgtagaagttc 38  Q
    |||||||||||||||||||||||||||||||||||||    
T  45157882 cggtacacctcattttgtgagtgtaccgtagaagttc 45157918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 9122195 - 9122156
Alignment:
Q  1 ccggtacacctcattttgtgagtgtaccgtagaagttccc 40  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  9122195 ccggtacaccttattttgtgagtgtaccgtagaagttccc 9122156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 32401118 - 32401079
Alignment:
Q  1 ccggtacacctcattttgtgagtgtaccgtagaagttccc 40  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  32401118 ccggtacacctcatcttgtgagtgtaccgtagaagttccc 32401079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 40
Target Start/End: Complemental strand, 43440033 - 43439995
Alignment:
Q  2 cggtacacctcattttgtgagtgtaccgtagaagttccc 40  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  43440033 cggtacacctcattttgtgagtgtgccgtagaagttccc 43439995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 17451321 - 17451285
Alignment:
Q  1 ccggtacacctcattttgtgagtgtaccgtagaagtt 37  Q
    ||||||||||| |||||||||||||||||||||||||    
T  17451321 ccggtacaccttattttgtgagtgtaccgtagaagtt 17451285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 37
Target Start/End: Complemental strand, 36754371 - 36754339
Alignment:
Q  5 tacacctcattttgtgagtgtaccgtagaagtt 37  Q
    |||||||||||||||||||||||||||||||||    
T  36754371 tacacctcattttgtgagtgtaccgtagaagtt 36754339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 1580286 - 1580247
Alignment:
Q  1 ccggtacacctcattttgtgagtgtaccgtagaagttccc 40  Q
    ||||||||||||| |||||||||||||||||||| |||||    
T  1580286 ccggtacacctcactttgtgagtgtaccgtagaaattccc 1580247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 5 - 40
Target Start/End: Original strand, 4740596 - 4740631
Alignment:
Q  5 tacacctcattttgtgagtgtaccgtagaagttccc 40  Q
    ||||||||||||||||||||||| ||||||||||||    
T  4740596 tacacctcattttgtgagtgtactgtagaagttccc 4740631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 40
Target Start/End: Original strand, 40495815 - 40495853
Alignment:
Q  2 cggtacacctcattttgtgagtgtaccgtagaagttccc 40  Q
    |||| ||||||||||||||||||||| ||||||||||||    
T  40495815 cggtgcacctcattttgtgagtgtacagtagaagttccc 40495853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 6945709 - 6945746
Alignment:
Q  1 ccggtacacctcattttgtgagtgtaccgtagaagttc 38  Q
    |||||||||||||| || ||||||||||||||||||||    
T  6945709 ccggtacacctcatcttatgagtgtaccgtagaagttc 6945746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 8333931 - 8333891
Alignment:
Q  1 ccggtacacctcattttgtgag-tgtaccgtagaagttccc 40  Q
    ||||||||||||| |||||||| ||||||||||||||||||    
T  8333931 ccggtacacctcaatttgtgaggtgtaccgtagaagttccc 8333891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 12182925 - 12182965
Alignment:
Q  1 ccggtacacctcattttgtga-gtgtaccgtagaagttccc 40  Q
    ||||||||||||||||||| | |||||||||||||||||||    
T  12182925 ccggtacacctcattttgttaggtgtaccgtagaagttccc 12182965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 39
Target Start/End: Original strand, 33493841 - 33493877
Alignment:
Q  3 ggtacacctcattttgtgagtgtaccgtagaagttcc 39  Q
    |||||||||||| |||||||||||||||| |||||||    
T  33493841 ggtacacctcatcttgtgagtgtaccgtaaaagttcc 33493877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 38073146 - 38073106
Alignment:
Q  1 ccggtacacctcattttgtgag-tgtaccgtagaagttccc 40  Q
    ||||||||||||| |||||||| ||||||||||||||||||    
T  38073146 ccggtacacctcaatttgtgaggtgtaccgtagaagttccc 38073106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 41555471 - 41555431
Alignment:
Q  1 ccggtacacctcattttgtgag-tgtaccgtagaagttccc 40  Q
    ||||||||||||| |||||||| ||||||||||||||||||    
T  41555471 ccggtacacctcaatttgtgaggtgtaccgtagaagttccc 41555431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 45690539 - 45690499
Alignment:
Q  1 ccggtacacctcattttgtgag-tgtaccgtagaagttccc 40  Q
    ||||||||||||| |||||||| ||||||||||||||||||    
T  45690539 ccggtacacctcaatttgtgaggtgtaccgtagaagttccc 45690499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 12105199 - 12105160
Alignment:
Q  1 ccggtacacctcattttgtgagtgtaccgtagaagttccc 40  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  12105199 ccggtacacctcattttgtgagtgtaccgtagaagttccc 12105160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 10408662 - 10408701
Alignment:
Q  1 ccggtacacctcattttgtgagtgtaccgtagaagttccc 40  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  10408662 ccggtacacctcactttgtgagtgtaccgtagaagttccc 10408701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 5 - 40
Target Start/End: Complemental strand, 31821606 - 31821571
Alignment:
Q  5 tacacctcattttgtgagtgtaccgtagaagttccc 40  Q
    ||||||||||||||||||||||||||||||||||||    
T  31821606 tacacctcattttgtgagtgtaccgtagaagttccc 31821571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 46362062 - 46362023
Alignment:
Q  1 ccggtacacctcattttgtgagtgtaccgtagaagttccc 40  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  46362062 ccggtacacctcattttgtgaatgtaccgtagaagttccc 46362023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 46641884 - 46641923
Alignment:
Q  1 ccggtacacctcattttgtgagtgtaccgtagaagttccc 40  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  46641884 ccggtacacctcattttgcgagtgtaccgtagaagttccc 46641923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 52345638 - 52345599
Alignment:
Q  1 ccggtacacctcattttgtgagtgtaccgtagaagttccc 40  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  52345638 ccggtacacctcactttgtgagtgtaccgtagaagttccc 52345599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 47544664 - 47544702
Alignment:
Q  1 ccggtacacctcattttgtgagtgtaccgtagaagttcc 39  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  47544664 ccggtacacctcattttgtgagtgtaccatagaagttcc 47544702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 6966276 - 6966309
Alignment:
Q  1 ccggtacacctcattttgtgagtgtaccgtagaa 34  Q
    ||||||||||||||||||||||||||||||||||    
T  6966276 ccggtacacctcattttgtgagtgtaccgtagaa 6966309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 34038200 - 34038163
Alignment:
Q  1 ccggtacacctcattttgtgagtgtaccgtagaagttc 38  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  34038200 ccggtacacctcactttgtgagtgtaccgtagaagttc 34038163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 37
Target Start/End: Original strand, 38718103 - 38718135
Alignment:
Q  5 tacacctcattttgtgagtgtaccgtagaagtt 37  Q
    |||||||||||||||||||||||||||||||||    
T  38718103 tacacctcattttgtgagtgtaccgtagaagtt 38718135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 40
Target Start/End: Original strand, 46235202 - 46235238
Alignment:
Q  4 gtacacctcattttgtgagtgtaccgtagaagttccc 40  Q
    |||||||||||||||| ||||||||||||||||||||    
T  46235202 gtacacctcattttgtaagtgtaccgtagaagttccc 46235238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 48760431 - 48760467
Alignment:
Q  1 ccggtacacctcattttgtgagtgtaccgtagaagtt 37  Q
    |||||| ||||||||||||||||||||||||||||||    
T  48760431 ccggtatacctcattttgtgagtgtaccgtagaagtt 48760467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 52861336 - 52861300
Alignment:
Q  1 ccggtacacctcattttgtgagtgtaccgtagaagtt 37  Q
    ||||||||||||||||||||||||||||||| |||||    
T  52861336 ccggtacacctcattttgtgagtgtaccgtaaaagtt 52861300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 5 - 40
Target Start/End: Complemental strand, 2249622 - 2249587
Alignment:
Q  5 tacacctcattttgtgagtgtaccgtagaagttccc 40  Q
    ||||||||||||||||||||||||| ||||||||||    
T  2249622 tacacctcattttgtgagtgtaccgcagaagttccc 2249587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 13202975 - 13202936
Alignment:
Q  1 ccggtacacctcattttgtgagtgtaccgtagaagttccc 40  Q
    ||||||||||||||||| ||||||||| ||||||||||||    
T  13202975 ccggtacacctcattttctgagtgtacagtagaagttccc 13202936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 24003458 - 24003419
Alignment:
Q  1 ccggtacacctcattttgtgagtgtaccgtagaagttccc 40  Q
    |||| |||||||||||||| ||||||||||||||||||||    
T  24003458 ccggaacacctcattttgttagtgtaccgtagaagttccc 24003419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 5 - 40
Target Start/End: Complemental strand, 24230604 - 24230569
Alignment:
Q  5 tacacctcattttgtgagtgtaccgtagaagttccc 40  Q
    ||||||||| ||||||||||||||||||||||||||    
T  24230604 tacacctcactttgtgagtgtaccgtagaagttccc 24230569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 25702474 - 25702435
Alignment:
Q  1 ccggtacacctcattttgtgagtgtaccgtagaagttccc 40  Q
    ||||||||||||| ||| ||||||||||||||||||||||    
T  25702474 ccggtacacctcaatttatgagtgtaccgtagaagttccc 25702435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 35873975 - 35873936
Alignment:
Q  1 ccggtacacctcattttgtgagtgtaccgtagaagttccc 40  Q
    |||||||| |||| ||||||||||||||||||||||||||    
T  35873975 ccggtacatctcactttgtgagtgtaccgtagaagttccc 35873936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 38261170 - 38261209
Alignment:
Q  1 ccggtacacctcattttgtgagtgtaccgtagaagttccc 40  Q
    ||||||||||||| ||| ||||||||||||||||||||||    
T  38261170 ccggtacacctcactttatgagtgtaccgtagaagttccc 38261209  T

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Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 44264024 - 44264063
Alignment:
Q  1 ccggtacacctcattttgtgagtgtaccgtagaagttccc 40  Q
    ||||||||||||| ||||||||||||||||||| ||||||    
T  44264024 ccggtacacctcactttgtgagtgtaccgtagatgttccc 44264063  T

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Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 45622519 - 45622480
Alignment:
Q  1 ccggtacacctcattttgtgagtgtaccgtagaagttccc 40  Q
    |||||||||||||||||||||||||| |||| ||||||||    
T  45622519 ccggtacacctcattttgtgagtgtaacgtataagttccc 45622480  T

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Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 47693566 - 47693601
Alignment:
Q  1 ccggtacacctcattttgtgagtgtaccgtagaagt 36  Q
    |||||||||||||||||||||||||||| |||||||    
T  47693566 ccggtacacctcattttgtgagtgtaccatagaagt 47693601  T

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Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 40
Target Start/End: Complemental strand, 6526466 - 6526428
Alignment:
Q  2 cggtacacctcattttgtgagtgtaccgtagaagttccc 40  Q
    |||||||||||| |||||||||||||||||||| |||||    
T  6526466 cggtacacctcactttgtgagtgtaccgtagaaattccc 6526428  T

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Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 40
Target Start/End: Complemental strand, 10348065 - 10348027
Alignment:
Q  2 cggtacacctcattttgtgagtgtaccgtagaagttccc 40  Q
    |||||||| | ||||||||||||||||||||||||||||    
T  10348065 cggtacactttattttgtgagtgtaccgtagaagttccc 10348027  T

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Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 40
Target Start/End: Original strand, 28624847 - 28624884
Alignment:
Q  3 ggtacacctcattttgtgagtgtaccgtagaagttccc 40  Q
    ||||||||||| ||||| ||||||||||||||||||||    
T  28624847 ggtacacctcactttgtaagtgtaccgtagaagttccc 28624884  T

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Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 6 - 38
Target Start/End: Original strand, 30572673 - 30572705
Alignment:
Q  6 acacctcattttgtgagtgtaccgtagaagttc 38  Q
    |||||||||||||||| ||||||||||||||||    
T  30572673 acacctcattttgtgaatgtaccgtagaagttc 30572705  T

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Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 40
Target Start/End: Complemental strand, 31530343 - 31530307
Alignment:
Q  4 gtacacctcattttgtgagtgtaccgtagaagttccc 40  Q
    |||||||||||||||| ||||||| ||||||||||||    
T  31530343 gtacacctcattttgtaagtgtacggtagaagttccc 31530307  T

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Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 40054954 - 40054994
Alignment:
Q  1 ccggtacacctcattttgtgag-tgtaccgtagaagttccc 40  Q
    ||||||||||||| |||||||| ||||||||||||||||||    
T  40054954 ccggtacacctcaatttgtgaggtgtaccgtagaagttccc 40054994  T

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Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 43916386 - 43916346
Alignment:
Q  1 ccggtacacctcattttgtgag-tgtaccgtagaagttccc 40  Q
    ||||||||||||| |||||||| ||||||||||||||||||    
T  43916386 ccggtacacctcaatttgtgaggtgtaccgtagaagttccc 43916346  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 702317 - 702355
Alignment:
Q  1 ccggtacacctcattttgtgagtgtaccgtagaagttcc 39  Q
    |||||||||||||||||||||||||||||||||||||||    
T  702317 ccggtacacctcattttgtgagtgtaccgtagaagttcc 702355  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 9604470 - 9604433
Alignment:
Q  1 ccggtacacctcattttgtgagtgtaccgtagaagttc 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  9604470 ccggtacacctcattttgtgagtgtaccgtagaagttc 9604433  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 33210737 - 33210773
Alignment:
Q  1 ccggtacacctcattttgtgagtgtaccgtagaagtt 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  33210737 ccggtacacctcattttgtgagtgtaccgtagaagtt 33210773  T

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Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 4 - 40
Target Start/End: Complemental strand, 42597510 - 42597474
Alignment:
Q  4 gtacacctcattttgtgagtgtaccgtagaagttccc 40  Q
    |||||||||||||||||||||||||||||||||||||    
T  42597510 gtacacctcattttgtgagtgtaccgtagaagttccc 42597474  T

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Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 5 - 40
Target Start/End: Original strand, 2852069 - 2852104
Alignment:
Q  5 tacacctcattttgtgagtgtaccgtagaagttccc 40  Q
    ||||||||||||||||||||||||||||||||||||    
T  2852069 tacacctcattttgtgagtgtaccgtagaagttccc 2852104  T

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Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 6260385 - 6260424
Alignment:
Q  1 ccggtacacctcattttgtgagtgtaccgtagaagttccc 40  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  6260385 ccggtacacctcattttatgagtgtaccgtagaagttccc 6260424  T

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Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 13127348 - 13127387
Alignment:
Q  1 ccggtacacctcattttgtgagtgtaccgtagaagttccc 40  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  13127348 ccggtacacctcattttgtgaatgtaccgtagaagttccc 13127387  T

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Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 36427944 - 36427905
Alignment:
Q  1 ccggtacacctcattttgtgagtgtaccgtagaagttccc 40  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  36427944 ccggtacacctcactttgtgagtgtaccgtagaagttccc 36427905  T

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Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 39816544 - 39816506
Alignment:
Q  1 ccggtacacctcattttgtgagtgtaccgtagaagttcc 39  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  39816544 ccggtacacctcactttgtgagtgtaccgtagaagttcc 39816506  T

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Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 2 - 39
Target Start/End: Complemental strand, 40563153 - 40563116
Alignment:
Q  2 cggtacacctcattttgtgagtgtaccgtagaagttcc 39  Q
    |||||||||||||||| |||||||||||||||||||||    
T  40563153 cggtacacctcattttatgagtgtaccgtagaagttcc 40563116  T

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Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 40803688 - 40803724
Alignment:
Q  1 ccggtacacctcattttgtgagtgtaccgtagaagtt 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  40803688 ccggtacacctcattttgtgagtgcaccgtagaagtt 40803724  T

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Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 2 - 37
Target Start/End: Complemental strand, 9910077 - 9910042
Alignment:
Q  2 cggtacacctcattttgtgagtgtaccgtagaagtt 37  Q
    ||||||||||||||||||||||||||| ||||||||    
T  9910077 cggtacacctcattttgtgagtgtaccatagaagtt 9910042  T

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Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 5 - 40
Target Start/End: Complemental strand, 14434853 - 14434818
Alignment:
Q  5 tacacctcattttgtgagtgtaccgtagaagttccc 40  Q
    ||||||||||||||||||||||| ||||||||||||    
T  14434853 tacacctcattttgtgagtgtacagtagaagttccc 14434818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 29960234 - 29960273
Alignment:
Q  1 ccggtacacctcattttgtgagtgtaccgtagaagttccc 40  Q
    ||||||||||||||||| ||||||||||||| ||||||||    
T  29960234 ccggtacacctcattttatgagtgtaccgtaaaagttccc 29960273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 30753460 - 30753421
Alignment:
Q  1 ccggtacacctcattttgtgagtgtaccgtagaagttccc 40  Q
    |||||||| ||||||||||||||||||||||||| |||||    
T  30753460 ccggtacatctcattttgtgagtgtaccgtagaaattccc 30753421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 5 - 40
Target Start/End: Original strand, 33678529 - 33678564
Alignment:
Q  5 tacacctcattttgtgagtgtaccgtagaagttccc 40  Q
    |||||||||||||||||||||||| |||||||||||    
T  33678529 tacacctcattttgtgagtgtaccatagaagttccc 33678564  T

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Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 42486644 - 42486605
Alignment:
Q  1 ccggtacacctcattttgtgagtgtaccgtagaagttccc 40  Q
    ||||||||||||| |||||||||||||||||||| |||||    
T  42486644 ccggtacacctcactttgtgagtgtaccgtagaaattccc 42486605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 38
Target Start/End: Complemental strand, 479710 - 479676
Alignment:
Q  4 gtacacctcattttgtgagtgtaccgtagaagttc 38  Q
    |||||||||| ||||||||||||||||||||||||    
T  479710 gtacacctcactttgtgagtgtaccgtagaagttc 479676  T

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Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 5512722 - 5512682
Alignment:
Q  1 ccggtacacctcattttgtgag-tgtaccgtagaagttccc 40  Q
    ||||||||||||| |||||||| ||||||||||||||||||    
T  5512722 ccggtacacctcaatttgtgaggtgtaccgtagaagttccc 5512682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 13119166 - 13119202
Alignment:
Q  1 ccggtacacctcattttgtgagtgtaccgtagaagtt 37  Q
    ||||||||||||| ||||| |||||||||||||||||    
T  13119166 ccggtacacctcactttgtaagtgtaccgtagaagtt 13119202  T

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Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 30753486 - 30753458
Alignment:
Q  1 ccggtacacctcattttgtgagtgtaccg 29  Q
    |||||||||||||||||||||||||||||    
T  30753486 ccggtacacctcattttgtgagtgtaccg 30753458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 31588601 - 31588641
Alignment:
Q  1 ccggtacacctcattttgtgag-tgtaccgtagaagttccc 40  Q
    ||||||||||||| |||||||| ||||||||||||||||||    
T  31588601 ccggtacacctcaatttgtgaggtgtaccgtagaagttccc 31588641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 39939073 - 39939033
Alignment:
Q  1 ccggtacacctcattttgtgag-tgtaccgtagaagttccc 40  Q
    ||||||||||||| |||||||| ||||||||||||||||||    
T  39939073 ccggtacacctcaatttgtgaggtgtaccgtagaagttccc 39939033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1319 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold1319
Description:

Target: scaffold1319; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 5 - 40
Target Start/End: Complemental strand, 78 - 43
Alignment:
Q  5 tacacctcattttgtgagtgtaccgtagaagttccc 40  Q
    ||||||||||||||||||||||||||||||||||||    
T  78 tacacctcattttgtgagtgtaccgtagaagttccc 43  T

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Target: scaffold0923 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0923
Description:

Target: scaffold0923; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 52 - 91
Alignment:
Q  1 ccggtacacctcattttgtgagtgtaccgtagaagttccc 40  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  52 ccggtacacctcactttgtgagtgtaccgtagaagttccc 91  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 200 - 239
Alignment:
Q  1 ccggtacacctcattttgtgagtgtaccgtagaagttccc 40  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  200 ccggtacacctcactttgtgagtgtaccgtagaagttccc 239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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