View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11745_low_74 (Length: 389)
Name: NF11745_low_74
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11745_low_74 |
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Alignment Details
Target: chr3 (Bit Score: 295; Significance: 1e-165; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 1 - 370
Target Start/End: Original strand, 32727015 - 32727386
Alignment:
| Q |
1 |
gaggatgagacagtggaagtccaaaaactgattggtaagttaagagaatattgttatgtgcgctgttgtcactaacaacatgacctcctacctgatgtga |
100 |
Q |
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| T |
32727015 |
gaggatgagacagtggaagtccaaaaactgattggtaagttaagggaatattgttatgtgcgctgttgtcactaacaacatgacctcctacctgatgtga |
32727114 |
T |
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| Q |
101 |
atgcaaattatttttaaatattttatgaaataaataacttataaaagagtatattcgtaaataattatgactgccgttttttatttatactccaactttg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32727115 |
atgcaaattatttttaaatattttatgaaataaataacttataaaagagtatattcgtaaataattatgactgccgttttttatttatactccaactttg |
32727214 |
T |
|
| Q |
201 |
tcttgctcttga--annnnnnnnnnaattttatagattagcatagtcactatacctatgtaannnnnnnncaattgctcataagccccttgagtttatgc |
298 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | |
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| T |
32727215 |
tcttgctcttgatttttttttttttaattttatagattagcatagtcactatacctatgtaattttttttcaattgctcataagccccttgagtttatac |
32727314 |
T |
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| Q |
299 |
ataactttttacgagcctcaagtttccatctatctcacccagctcatagtttggtttgatgtttatccattt |
370 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32727315 |
ataactttttacgagcctcaagtttccatctatctcacccagctcatagtttggtttgatgtttatccattt |
32727386 |
T |
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