View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11745_low_75 (Length: 388)
Name: NF11745_low_75
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11745_low_75 |
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Alignment Details
Target: chr1 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 15 - 372
Target Start/End: Original strand, 29175045 - 29175406
Alignment:
| Q |
15 |
cttttgtcataagtccaagtaagaacttccgcatacgccctgaattgaaaaagagaagacggcctccaatgagttatataacttataagacaacccttga |
114 |
Q |
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| T |
29175045 |
cttttgtcataagtccaagtaagaacttccgcatacgccctgaattgaaaaagagaagacggcctccaatgagttatataacttataagacaacccttga |
29175144 |
T |
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| Q |
115 |
tataatttaacacttagccaaagaaaaacaataacacaagacatgccatcattagtgatgtacttgtctgttacctcctttgtctgtacttttgttttgg |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29175145 |
tataatttaacacttagccaaagaaaaacaataacacaagacatgccatcattagtgatgtacttgtctgttacctcctttgtctgtacttttgttttgg |
29175244 |
T |
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| Q |
215 |
tcgaatctttagtttgtactttggttaactagaaactaagctctattgagttcaatagaagttcaaaacaggaattgtacacttcaatggatactcctat |
314 |
Q |
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|||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
29175245 |
tcgaatctttagtttgtactttggttaacttgaaacgaagctctattgagttcaatagaagttcaaaacagg-attgtacacttcaatggatactcctat |
29175343 |
T |
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| Q |
315 |
tcaaatnnnnnnnt-----catttagtgtgctcatgcatataggacatgaacatgtctgatat |
372 |
Q |
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|||||| | | ||||||||||||||||||||||||||||||||||||||||| |
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| T |
29175344 |
tcaaataaataaataaaaaaaattagtgtgctcatgcatataggacatgaacatgtctgatat |
29175406 |
T |
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