View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11745_low_76 (Length: 386)
Name: NF11745_low_76
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11745_low_76 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 51 - 386
Target Start/End: Complemental strand, 17466029 - 17465691
Alignment:
| Q |
51 |
tcaaatagtctaatgactgaaattcattttaatgtgaataagtgagatgtccaaagttggaacaccgacctctatatataataatgaatcgtctttatca |
150 |
Q |
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| T |
17466029 |
tcaaatagtctaatgaccgaaattcattttaatgtgaataagtgagatgtccaaagttggaacaccgacctctatatataataatgaatcatctttatca |
17465930 |
T |
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| Q |
151 |
attgagtttgatactgacaaataaaataacgttttaacccttctatctctccatgtctttatcaattgagctatatttagaggaccac--aaatttattt |
248 |
Q |
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| T |
17465929 |
attgagcttgatactgacaaataaaatgacgttttaacccttctatctctccatatctttatcaattgagctatatttacgggaccacctgaatttattt |
17465830 |
T |
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| Q |
249 |
caacacataaattctttcatttattatggaaaccagcttgatcctgcaaaacaaacaaaatgacgttttagccctactatc-ctccatttatttgttgtc |
347 |
Q |
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| T |
17465829 |
taacacataaattctttcatttattatggaaaccagcttgatcctacacaacaaacaaaatgacgttttagccctacaatctctccatttatttgttgtc |
17465730 |
T |
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| Q |
348 |
ctttttgcgcaaacttgttgagtatggagtctagttaca |
386 |
Q |
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| T |
17465729 |
cttttcgcacaaacttgttgagtaaggagtctagttaca |
17465691 |
T |
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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 133
Target Start/End: Complemental strand, 20221530 - 20221466
Alignment:
| Q |
70 |
aaattcattttaat-gtgaataagtgagatgtccaaagttggaacaccgacctctatatataata |
133 |
Q |
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| T |
20221530 |
aaattcattttaaaagtgaataagtgggatgtccgaggttcgaacaccgacccctacatataata |
20221466 |
T |
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