View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11745_low_77 (Length: 384)
Name: NF11745_low_77
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11745_low_77 |
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Alignment Details
Target: chr3 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 19 - 369
Target Start/End: Original strand, 7904754 - 7905104
Alignment:
| Q |
19 |
ctaatggagaacaaagtatgaaatacagctaagctaactaaaccaagatcctagggtcatttcctaatgactagaaatatacacaaatttcactctagag |
118 |
Q |
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| T |
7904754 |
ctaatggagaacaaagtatgaaatacagctaagctaagtaaaccaagatcctagggtcatttcctaatgactagaaatatacacaaatttcactctagag |
7904853 |
T |
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| Q |
119 |
atgaatcctaaatgaaaaagtaactcatacacttcactttctatgctgagaatggtgcaaagatttttgtgaaccatgaaaaagatccaaaatataacat |
218 |
Q |
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| T |
7904854 |
atgaatcctaaatgagaaagtaactcatacacttcactttctatgctgagaatggtgcaaagatttttgtgaaccatgaaaaagatccaaaatataacat |
7904953 |
T |
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| Q |
219 |
tgtagatcatcgaccgtatacttgatccacttctcatcaatgttagacgagtttctacctgtataacttcggtaagcaggaataactttctgagaaaccg |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |
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| T |
7904954 |
tgtagatcatcgaccgtatacttgatccacttctcatcaatgttagacgagtttctacctgtataacttcggtaagcaggaatcaatttctgagaaaccg |
7905053 |
T |
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| Q |
319 |
atatttgtaggtcttcgcgaagttctttatcaggtacactccaccccgtct |
369 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7905054 |
atatttgtaggtcttcgcgaagttctttatcaggtacactccaccccgtct |
7905104 |
T |
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