View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11745_low_78 (Length: 383)
Name: NF11745_low_78
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11745_low_78 |
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Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 149 - 368
Target Start/End: Complemental strand, 26216518 - 26216299
Alignment:
| Q |
149 |
agtagttgtcaagcattctagatgtgcattaggaaatgtatgacacaaatcaccatcggtgcgtgctctatcaagttttacctccactgtgtgctctgtg |
248 |
Q |
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| T |
26216518 |
agtagttgtcaagcattctagatgtgcattaggaaatgtttgacacaaatcaccattggtgcgtgctctatccagttttacctccactgtgtgctctgtg |
26216419 |
T |
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| Q |
249 |
ccaataaaatggaaccaagtaaattaatagccttccttgcgcaaatcgaacaacctggaatctgatactgcttgtctaaacctattgatcactcgacttg |
348 |
Q |
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| T |
26216418 |
ccaataaaatggaaccaagtaaattaatagccttccatgcgcaaatcgaacagcctggaatttgatactgcttgtctaaacctattgatcactcgacttg |
26216319 |
T |
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| Q |
349 |
gacagtcaacacatcttttc |
368 |
Q |
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|||| | ||||||||||||| |
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| T |
26216318 |
gacaattaacacatcttttc |
26216299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 26216697 - 26216551
Alignment:
| Q |
1 |
aagcacacatgcaaagatgatcaaaaatattacctccatttaagatatgcaaactttgacaaaaaatcctcaaagcctggttttccnnnnnnngcttttc |
100 |
Q |
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|||||||||||| ||| ||||||| ||||||| |||||||| |||||||| ||| ||||| |||||||||||||||||||| | | || ||| |
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| T |
26216697 |
aagcacacatgccaagctgatcaacaatattaactccatttgagatatgccaacattgactcaaaatcctcaaagcctggttctgccaacaaagcatttt |
26216598 |
T |
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| Q |
101 |
aaaatttaaaccgccgcattgaactcatagaagtcctgatcggatca |
147 |
Q |
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| T |
26216597 |
caaacttgaaccgccgcgttgaactcatagaagtactgatgggatca |
26216551 |
T |
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