View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11745_low_8 (Length: 682)

Name: NF11745_low_8
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11745_low_8
NF11745_low_8
[»] chr5 (10 HSPs)
chr5 (367-626)||(36882695-36882957)
chr5 (163-242)||(36882476-36882558)
chr5 (12-94)||(36882093-36882170)
chr5 (40-93)||(12521543-12521596)
chr5 (40-93)||(2880549-2880602)
chr5 (285-346)||(36882622-36882683)
chr5 (47-95)||(29588892-29588940)
chr5 (42-76)||(28413288-28413322)
chr5 (42-75)||(11615534-11615567)
chr5 (42-75)||(36638780-36638813)
[»] scaffold0519 (1 HSPs)
scaffold0519 (376-449)||(7450-7521)
[»] chr8 (5 HSPs)
chr8 (376-449)||(11229298-11229369)
chr8 (40-93)||(28769341-28769394)
chr8 (56-93)||(42370379-42370416)
chr8 (47-83)||(29169106-29169142)
chr8 (43-75)||(31751562-31751594)
[»] chr4 (7 HSPs)
chr4 (40-74)||(22662249-22662283)
chr4 (47-92)||(45927365-45927410)
chr4 (40-74)||(22666728-22666762)
chr4 (45-75)||(41603418-41603448)
chr4 (42-75)||(6466050-6466083)
chr4 (46-95)||(37575944-37575993)
chr4 (45-74)||(43886138-43886167)
[»] chr3 (2 HSPs)
chr3 (42-76)||(38318992-38319026)
chr3 (56-93)||(13371132-13371169)
[»] chr7 (2 HSPs)
chr7 (50-93)||(39505971-39506014)
chr7 (41-75)||(2825234-2825268)
[»] chr1 (10 HSPs)
chr1 (42-93)||(35925705-35925756)
chr1 (42-93)||(37593688-37593739)
chr1 (40-83)||(52286703-52286746)
chr1 (47-93)||(3597290-3597336)
chr1 (47-93)||(11893602-11893648)
chr1 (43-81)||(27820201-27820239)
chr1 (43-93)||(27820342-27820392)
chr1 (43-93)||(51695500-51695550)
chr1 (40-93)||(14629968-14630021)
chr1 (45-93)||(5047161-5047209)
[»] scaffold0089 (1 HSPs)
scaffold0089 (56-93)||(33645-33682)
[»] chr6 (2 HSPs)
chr6 (42-75)||(4420676-4420709)
chr6 (56-93)||(20512662-20512699)
[»] chr2 (3 HSPs)
chr2 (44-76)||(3235390-3235422)
chr2 (43-75)||(9174848-9174880)
chr2 (43-75)||(28039337-28039369)


Alignment Details
Target: chr5 (Bit Score: 183; Significance: 1e-98; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 367 - 626
Target Start/End: Original strand, 36882695 - 36882957
Alignment:
Q  367 ggaaggatgaagtagaagaaatcgaggacttttggaggggggagcttcggggaatttatttttctttatgatacaaaatcttcttagtttgggagaactc 466  Q
    |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |||||||||||||||| ||||||||||||     
T  36882695 ggaaggatgaagtagaagaaatcgaggactttgggaggggggagctttggggaatttatttttctttataatacaaaatcttcttaatttgggagaactt 36882794  T
Q  467 aaaagttg-attgaacaaagatttgagagggtttgcagggcttgga-taaattcaaacattaaaaatttaaaatgcctatttactccatta-ttttcagg 563  Q
    |||||||| | |||||||||||||||||||||||||||||||||||  ||||||||| ||||||||||||||||| ||||||||||||||| || | | |    
T  36882795 aaaagttgtactgaacaaagatttgagagggtttgcagggcttggacaaaattcaaagattaaaaatttaaaatgtctatttactccattacttgtaaag 36882894  T
Q  564 tgaagaatatgcatgtagttgattttagaaacttccatgaagcaaaagttttactaaaatgtt 626  Q
    |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||    
T  36882895 tgaagaatatgcatgtagatgatttgagaaacttccatgaagcaaaagttttactaaaatgtt 36882957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 163 - 242
Target Start/End: Original strand, 36882476 - 36882558
Alignment:
Q  163 tattaaattgcttatcaaagtaaaccataagcttacaagcatt---tttgggagtaaatgacactttagtcattgaaatagta 242  Q
    |||||||||| ||||||||| |||||| |||||||||| ||||   ||||||||||||||||| |||||||||||||||||||    
T  36882476 tattaaattggttatcaaagcaaaccacaagcttacaaacattatttttgggagtaaatgacattttagtcattgaaatagta 36882558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 12 - 94
Target Start/End: Original strand, 36882093 - 36882170
Alignment:
Q  12 agaacctgtgaaaacaacatacaacaacatatgttcataagctattttcagcttatttccataaaatcttcataatagcttac 94  Q
    ||||||| ||||||||||||| ||||     ||||||||| ||||||||| ||||||||||||||||||||||||||||||||    
T  36882093 agaacctatgaaaacaacatataaca-----tgttcataacctattttcatcttatttccataaaatcttcataatagcttac 36882170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 40 - 93
Target Start/End: Complemental strand, 12521596 - 12521543
Alignment:
Q  40 atatgttcataagctattttcagcttatttccataaaatcttcataatagctta 93  Q
    ||||||||||||||| ||||||||||||||||||||  |||||| |||||||||    
T  12521596 atatgttcataagctgttttcagcttatttccataagctcttcaaaatagctta 12521543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 93
Target Start/End: Original strand, 2880549 - 2880602
Alignment:
Q  40 atatgttcataagctattttcagcttatttccataaaatcttcataatagctta 93  Q
    ||||||||||||| | ||||||||||||||||||||| |||||  |||||||||    
T  2880549 atatgttcataaggtgttttcagcttatttccataaactcttctgaatagctta 2880602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 285 - 346
Target Start/End: Original strand, 36882622 - 36882683
Alignment:
Q  285 caatttagttatttcatcaaaacaattatttggggtatgtttggaagtttacgagaggaggg 346  Q
    |||||| ||| |||||| |||| | ||||||||||||||||||| |||||| ||||||||||    
T  36882622 caatttggttctttcataaaaatatttatttggggtatgtttgggagtttatgagaggaggg 36882683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 47 - 95
Target Start/End: Complemental strand, 29588940 - 29588892
Alignment:
Q  47 cataagctattttcagcttatttccataaaatcttcataatagcttacg 95  Q
    |||| ||||||||||||||||||||||||| ||||||  ||||||||||    
T  29588940 cataggctattttcagcttatttccataaactcttcaacatagcttacg 29588892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 42 - 76
Target Start/End: Original strand, 28413288 - 28413322
Alignment:
Q  42 atgttcataagctattttcagcttatttccataaa 76  Q
    ||||||||||||| |||||||||||||||||||||    
T  28413288 atgttcataagctgttttcagcttatttccataaa 28413322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 75
Target Start/End: Complemental strand, 11615567 - 11615534
Alignment:
Q  42 atgttcataagctattttcagcttatttccataa 75  Q
    ||||||||||||| ||||||||||||||||||||    
T  11615567 atgttcataagctgttttcagcttatttccataa 11615534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 75
Target Start/End: Complemental strand, 36638813 - 36638780
Alignment:
Q  42 atgttcataagctattttcagcttatttccataa 75  Q
    ||||||||||||| ||||||||||||||||||||    
T  36638813 atgttcataagcttttttcagcttatttccataa 36638780  T

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Target: scaffold0519 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 376 - 449
Target Start/End: Original strand, 7450 - 7521
Alignment:
Q  376 aagtagaagaaatcgaggacttttggaggggggagcttcggggaatttatttttctttatgatacaaaatcttc 449  Q
    |||||||| |||| |||||| ||  ||||||  |||||||||||||||||||||||| || |||||||||||||    
T  7450 aagtagaataaatagaggacatt--gaggggaaagcttcggggaatttatttttcttcataatacaaaatcttc 7521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000003; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 376 - 449
Target Start/End: Complemental strand, 11229369 - 11229298
Alignment:
Q  376 aagtagaagaaatcgaggacttttggaggggggagcttcggggaatttatttttctttatgatacaaaatcttc 449  Q
    |||||||| |||| |||||| ||  ||||||  |||||||||||||||||||||||| || |||||||||||||    
T  11229369 aagtagaataaatagaggacatt--gaggggaaagcttcggggaatttatttttcttcataatacaaaatcttc 11229298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 93
Target Start/End: Original strand, 28769341 - 28769394
Alignment:
Q  40 atatgttcataagctattttcagcttatttccataaaatcttcataatagctta 93  Q
    |||||| |||||| | ||||||||||||||||||||| ||| || |||||||||    
T  28769341 atatgtccataagttgttttcagcttatttccataaactctccaaaatagctta 28769394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 93
Target Start/End: Original strand, 42370379 - 42370416
Alignment:
Q  56 ttttcagcttatttccataaaatcttcataatagctta 93  Q
    ||||||||||||||||||||| ||||||| ||||||||    
T  42370379 ttttcagcttatttccataaactcttcatgatagctta 42370416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 47 - 83
Target Start/End: Original strand, 29169106 - 29169142
Alignment:
Q  47 cataagctattttcagcttatttccataaaatcttca 83  Q
    |||||||||||||| ||||||||||||||| ||||||    
T  29169106 cataagctattttcggcttatttccataaactcttca 29169142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 43 - 75
Target Start/End: Original strand, 31751562 - 31751594
Alignment:
Q  43 tgttcataagctattttcagcttatttccataa 75  Q
    ||||||||||||||||||||||||||| |||||    
T  31751562 tgttcataagctattttcagcttattttcataa 31751594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000003; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 74
Target Start/End: Original strand, 22662249 - 22662283
Alignment:
Q  40 atatgttcataagctattttcagcttatttccata 74  Q
    |||||||||||||||||||||||||||||||||||    
T  22662249 atatgttcataagctattttcagcttatttccata 22662283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 92
Target Start/End: Complemental strand, 45927410 - 45927365
Alignment:
Q  47 cataagctattttcagcttatttccataaaatcttcataatagctt 92  Q
    |||||||| ||||||||||||||||||||| ||| |||||||||||    
T  45927410 cataagctgttttcagcttatttccataaactctccataatagctt 45927365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 40 - 74
Target Start/End: Original strand, 22666728 - 22666762
Alignment:
Q  40 atatgttcataagctattttcagcttatttccata 74  Q
    ||||||||||||||||||||||| |||||||||||    
T  22666728 atatgttcataagctattttcagtttatttccata 22666762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 45 - 75
Target Start/End: Original strand, 41603418 - 41603448
Alignment:
Q  45 ttcataagctattttcagcttatttccataa 75  Q
    |||||||||||||||||||||||||||||||    
T  41603418 ttcataagctattttcagcttatttccataa 41603448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 75
Target Start/End: Original strand, 6466050 - 6466083
Alignment:
Q  42 atgttcataagctattttcagcttatttccataa 75  Q
    |||||||||||||||||||| |||||||||||||    
T  6466050 atgttcataagctattttcaacttatttccataa 6466083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 46 - 95
Target Start/End: Original strand, 37575944 - 37575993
Alignment:
Q  46 tcataagctattttcagcttatttccataaaatcttcataatagcttacg 95  Q
    ||||||| | ||||||||| ||||||||||| ||||||||||| ||||||    
T  37575944 tcataagttgttttcagctcatttccataaactcttcataatatcttacg 37575993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 74
Target Start/End: Original strand, 43886138 - 43886167
Alignment:
Q  45 ttcataagctattttcagcttatttccata 74  Q
    ||||||||||||||||||||||||||||||    
T  43886138 ttcataagctattttcagcttatttccata 43886167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 76
Target Start/End: Complemental strand, 38319026 - 38318992
Alignment:
Q  42 atgttcataagctattttcagcttatttccataaa 76  Q
    |||||||||||||||||||||||||||||||||||    
T  38319026 atgttcataagctattttcagcttatttccataaa 38318992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 93
Target Start/End: Complemental strand, 13371169 - 13371132
Alignment:
Q  56 ttttcagcttatttccataaaatcttcataatagctta 93  Q
    ||||||||||||||||||||  ||||||||||||||||    
T  13371169 ttttcagcttatttccataagctcttcataatagctta 13371132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 93
Target Start/End: Complemental strand, 39506014 - 39505971
Alignment:
Q  50 aagctattttcagcttatttccataaaatcttcataatagctta 93  Q
    ||||||||||||||||||||||||||| ||| || |||||||||    
T  39506014 aagctattttcagcttatttccataaactctccagaatagctta 39505971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 41 - 75
Target Start/End: Original strand, 2825234 - 2825268
Alignment:
Q  41 tatgttcataagctattttcagcttatttccataa 75  Q
    |||||||||||| ||||||||||||||||||||||    
T  2825234 tatgttcataagttattttcagcttatttccataa 2825268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 93
Target Start/End: Complemental strand, 35925756 - 35925705
Alignment:
Q  42 atgttcataagctattttcagcttatttccataaaatcttcataatagctta 93  Q
    ||||||||||||| |||||| |||||||||||||| ||| ||| ||||||||    
T  35925756 atgttcataagctgttttcaacttatttccataaactctccatgatagctta 35925705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 93
Target Start/End: Original strand, 37593688 - 37593739
Alignment:
Q  42 atgttcataagctattttcagcttatttccataaaatcttcataatagctta 93  Q
    ||||||||||||| |||||||||||||| |||||  |||||| |||||||||    
T  37593688 atgttcataagctgttttcagcttattttcataagctcttcaaaatagctta 37593739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 83
Target Start/End: Complemental strand, 52286746 - 52286703
Alignment:
Q  40 atatgttcataagctattttcagcttatttccataaaatcttca 83  Q
    |||||| ||||||||||||| |||||||||||||||| ||||||    
T  52286746 atatgtccataagctatttttagcttatttccataaactcttca 52286703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 47 - 93
Target Start/End: Original strand, 3597290 - 3597336
Alignment:
Q  47 cataagctattttcagcttatttccataaaatcttcataatagctta 93  Q
    |||||||||||||||||||||||||||||| | ||| | ||||||||    
T  3597290 cataagctattttcagcttatttccataaactgttcgtgatagctta 3597336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 47 - 93
Target Start/End: Original strand, 11893602 - 11893648
Alignment:
Q  47 cataagctattttcagcttatttccataaaatcttcataatagctta 93  Q
    |||||| | ||||||||||||||||||||| |||||| |||||||||    
T  11893602 cataagttgttttcagcttatttccataaactcttcaaaatagctta 11893648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 43 - 81
Target Start/End: Original strand, 27820201 - 27820239
Alignment:
Q  43 tgttcataagctattttcagcttatttccataaaatctt 81  Q
    ||||||||||||||||||||||||||| |||||| ||||    
T  27820201 tgttcataagctattttcagcttattttcataaattctt 27820239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 43 - 93
Target Start/End: Original strand, 27820342 - 27820392
Alignment:
Q  43 tgttcataagctattttcagcttatttccataaaatcttcataatagctta 93  Q
    ||||||||||||||||||||||||||| |||||| ||| ||  ||||||||    
T  27820342 tgttcataagctattttcagcttattttcataaattctccaagatagctta 27820392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 43 - 93
Target Start/End: Original strand, 51695500 - 51695550
Alignment:
Q  43 tgttcataagctattttcagcttatttccataaaatcttcataatagctta 93  Q
    ||||||||||||||||||||||||||| |||||| ||| ||  ||||||||    
T  51695500 tgttcataagctattttcagcttattttcataaattctccaagatagctta 51695550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 93
Target Start/End: Original strand, 14629968 - 14630021
Alignment:
Q  40 atatgttcataagctattttcagcttatttccataaaatcttcataatagctta 93  Q
    ||||||||||||| | ||||||||||||||||||||| ||| ||  ||||||||    
T  14629968 atatgttcataagttgttttcagcttatttccataaagtctccaagatagctta 14630021  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 45 - 93
Target Start/End: Complemental strand, 5047209 - 5047161
Alignment:
Q  45 ttcataagctattttcagcttatttccataaaatcttcataatagctta 93  Q
    |||||| ||| ||||||||||||||||||||  ||||||| ||||||||    
T  5047209 ttcatacgctgttttcagcttatttccataagctcttcatgatagctta 5047161  T

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Target: scaffold0089 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0089
Description:

Target: scaffold0089; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 93
Target Start/End: Original strand, 33645 - 33682
Alignment:
Q  56 ttttcagcttatttccataaaatcttcataatagctta 93  Q
    ||||||||||||||||||||  ||||||||||||||||    
T  33645 ttttcagcttatttccataagctcttcataatagctta 33682  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 75
Target Start/End: Complemental strand, 4420709 - 4420676
Alignment:
Q  42 atgttcataagctattttcagcttatttccataa 75  Q
    ||||||||||||| ||||||||||||||||||||    
T  4420709 atgttcataagctgttttcagcttatttccataa 4420676  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 93
Target Start/End: Original strand, 20512662 - 20512699
Alignment:
Q  56 ttttcagcttatttccataaaatcttcataatagctta 93  Q
    ||||||||||||||||||||  ||||||||||||||||    
T  20512662 ttttcagcttatttccataagctcttcataatagctta 20512699  T

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Target: chr2 (Bit Score: 29; Significance: 0.000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 44 - 76
Target Start/End: Original strand, 3235390 - 3235422
Alignment:
Q  44 gttcataagctattttcagcttatttccataaa 76  Q
    ||||||||||| |||||||||||||||||||||    
T  3235390 gttcataagctgttttcagcttatttccataaa 3235422  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 43 - 75
Target Start/End: Complemental strand, 9174880 - 9174848
Alignment:
Q  43 tgttcataagctattttcagcttatttccataa 75  Q
    ||||||||||||||||||||||||||| |||||    
T  9174880 tgttcataagctattttcagcttattttcataa 9174848  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 43 - 75
Target Start/End: Original strand, 28039337 - 28039369
Alignment:
Q  43 tgttcataagctattttcagcttatttccataa 75  Q
    |||||||||||| ||||||||||||||||||||    
T  28039337 tgttcataagctgttttcagcttatttccataa 28039369  T

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