View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11745_low_80 (Length: 378)
Name: NF11745_low_80
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11745_low_80 |
 | |
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| [»] scaffold0867 (1 HSPs) |
| | |
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Alignment Details
Target: chr4 (Bit Score: 288; Significance: 1e-161; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 42 - 372
Target Start/End: Complemental strand, 23563399 - 23563069
Alignment:
| Q |
42 |
cactcatgcaacgactaaattttttaacatatatatttgattatttatcctattccatggtnnnnnnnnnctacacatttcttttgaaaatgaaccccaa |
141 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
23563399 |
cactcatgcaacaactaaattttttaacatatatatttgattatttatcctattccatggtaaaaaaaaactacacatttcttttgaaaatgaaccccaa |
23563300 |
T |
|
| Q |
142 |
caatcaaggattttggtccaattatatacaaaatggtggtaatcctctttgtaacccaaaccaacaaaacacctcatattttgaaagtacatctcataac |
241 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| |
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|
| T |
23563299 |
caatcaaggattttggtccaattatatacaaaatggtggtaatcctctttgtaacccaaatcaacaaaacacctcatattttggaagtacatctcataac |
23563200 |
T |
|
| Q |
242 |
ccaaatccacatcataatccaaattttttaaattctccttttattccaattccacaaaataatccaccctttggaaattacccatatcatacttcacctt |
341 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23563199 |
ccaaatccacatcataatccaaattttttaaattctccttttattccaattccacaaaataatccaccctttggaaattacccatatcatacttcacctt |
23563100 |
T |
|
| Q |
342 |
accaatatcaatctcaacaattttcatctca |
372 |
Q |
| |
|
| ||||||||||||||||||||||||||||| |
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|
| T |
23563099 |
atcaatatcaatctcaacaattttcatctca |
23563069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 42 - 372
Target Start/End: Complemental strand, 48265090 - 48264748
Alignment:
| Q |
42 |
cactcatgcaacgactaaatttttt-aacatatatatttgattatttatcctattccatggtnnnnnnnnn-----------ctacacatttcttttgaa |
129 |
Q |
| |
|
||||||||||||| |||| |||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
48265090 |
cactcatgcaacggctaattttttttaacatatatatttgattatttatcctattccatggtaaaaaaaaaaaaaaaaaaaactacacatttcttttgaa |
48264991 |
T |
|
| Q |
130 |
aatgaaccccaacaatcaaggattttggtccaattatatacaaaatggtggtaatcctctttgtaacccaaaccaacaaaacacctcatattttgaaagt |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| |||| |
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|
| T |
48264990 |
aatgaaccccaacaatcaaggattttggtccaattatatacaaaatggtggtaatcctctttgtaacccaaatcaacaaaacaactcatattttggaagt |
48264891 |
T |
|
| Q |
230 |
acatctcataacccaaatccacatcataatccaaattttttaaattctccttttattccaattccacaaaataatccaccctttggaaattacccatatc |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |
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|
| T |
48264890 |
acatctcataacccaaatccacatcataatccaatttttttaaattctccttttattccaattccacaaaataatctaccttttggaaattacccatatc |
48264791 |
T |
|
| Q |
330 |
atacttcaccttaccaatatcaatctcaacaattttcatctca |
372 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48264790 |
atacttcaccttaccaatatcaatctcaacaattttcatctca |
48264748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 312 - 372
Target Start/End: Complemental strand, 32603758 - 32603698
Alignment:
| Q |
312 |
ttggaaattacccatatcatacttcaccttaccaatatcaatctcaacaattttcatctca |
372 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||| |||||| | |||||| ||||||||||| |
|
|
| T |
32603758 |
ttggaaattatccatatcatacaccaccttacccatatcactatcaacatttttcatctca |
32603698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 372
Target Start/End: Original strand, 19991465 - 19991838
Alignment:
| Q |
1 |
tcataaatatttaactcatgcaacggtaatannnnnnnnnncactcatgcaacgactaaattttttaacatatatatttgattatttatcctattccatg |
100 |
Q |
| |
|
||||| ||||||||||||||||||||||||| ||||||||||||| |||| ||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
19991465 |
tcatacatatttaactcatgcaacggtaatatatattttttcactcatgcaacggctaatttttttaacatatatatttaattatttatcctattccatg |
19991564 |
T |
|
| Q |
101 |
gtnnnnnnnnn--ctacacatttcttttgaaaatgaaccccaacaatcaaggattttggtccaattatatacaaaatggtggtaatcctctttgtaaccc |
198 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
19991565 |
gtaaaaaaaaaaactacacatttcttttgaaaatgaaccccaacaatcaagaattttggtccaattatatataaaatggtggtaatcctctttgtaaccc |
19991664 |
T |
|
| Q |
199 |
aaaccaacaaaacacctcatattttgaaagtacatctcataacccaaatccacatcataatccaaattttttaaattctccttttattccaattccacaa |
298 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||| || |||||| ||| ||||||||||||||||||||||||||||||||| |
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|
| T |
19991665 |
aaatcaacaaaacacctcatattttgaaagtacatctcataacccaaatccatattataatcaaaaatttttaaattctccttttattccaattccacaa |
19991764 |
T |
|
| Q |
299 |
aataatccaccctttggaaattacccatatcatacttcaccttaccaatatcaatctcaacaattttcatctca |
372 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
19991765 |
aataatctaccctttggaaattacccatatcatacttcaccttaccaacatcaatctcaataattttcatctca |
19991838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 148; Significance: 5e-78; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 112 - 372
Target Start/End: Original strand, 31071439 - 31071691
Alignment:
| Q |
112 |
ctacacatttcttttgaaaatgaaccccaacaatcaaggattttggtccaattatatacaaaatggtggtaatcctctttgtaacccaaaccaacaaaac |
211 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| |||| |||||||||||||||| | |||||||||| ||| || || || |||||| |||| |
|
|
| T |
31071439 |
ctacacatttctattgaaaatgaaccccaacaatgaaggcttttggtccaattataaataaaatggtggcaattcttcttttatcccaaaacaac----- |
31071533 |
T |
|
| Q |
212 |
acctcatattttgaaagtacatctcataacccaaatccacatcataatccaaattttttaaattctccttttattccaattccacaaaataatccaccct |
311 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||||||| | |||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||| |
|
|
| T |
31071534 |
---tcatattttggaagtacatctcataaccaaaatccaaaccataatccaaatttcttaaattctccttttatcccaattccacaaaataatctaccct |
31071630 |
T |
|
| Q |
312 |
ttggaaattacccatatcatacttcaccttaccaatatcaatctcaacaattttcatctca |
372 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
31071631 |
ttggaaattactcatatcatacttcaccttaccaatatcaatatcaacaattttcatctca |
31071691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 42 - 193
Target Start/End: Complemental strand, 52314336 - 52314183
Alignment:
| Q |
42 |
cactcatgcaacgactaaattttttaacatatatatttgattatttatcctattccatggtnnnnnnnnn-ctacacatttcttttgaaaatgaacccca |
140 |
Q |
| |
|
||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | |
|
|
| T |
52314336 |
cactcatgcaacggctaatttttttaacatatatatttgattatttatcctattccatggtaaaaaaaaaactacacatttcttttgaaaatgaaccc-a |
52314238 |
T |
|
| Q |
141 |
acaatcaaggattttggtccaatta--tatacaaaatggtggtaatcctctttgt |
193 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
52314237 |
acaatcaaggattttggtccaattatatatacaaaatggtggtaatcctctttgt |
52314183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 42 - 193
Target Start/End: Complemental strand, 53464746 - 53464593
Alignment:
| Q |
42 |
cactcatgcaacgactaaattttttaacatatatatttgattatttatcctattccatggtnnnnnnnnn-ctacacatttcttttgaaaatgaacccca |
140 |
Q |
| |
|
||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | |
|
|
| T |
53464746 |
cactcatgcaacggctaatttttttaacatatatatttgattatttatcctattccatggtaaaaaaaaaactacacatttcttttgaaaatgaaccc-a |
53464648 |
T |
|
| Q |
141 |
acaatcaaggattttggtccaatta--tatacaaaatggtggtaatcctctttgt |
193 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
53464647 |
acaatcaaggattttggtccaattatatatacaaaatggtggtaatcctctttgt |
53464593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 96; Significance: 5e-47; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 42 - 193
Target Start/End: Complemental strand, 35205631 - 35205477
Alignment:
| Q |
42 |
cactcatgcaacgactaaattttttaacatatatatttgattatttatcctattccatggtnnnnnnnnn----ctacacatttcttttgaaaatgaacc |
137 |
Q |
| |
|
||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
35205631 |
cactcatgcaacggctaatttttttaacatatatatttgattatttatcctattccatggtaaaaaaaagaaaactacacatttcttttgaaaatgaacc |
35205532 |
T |
|
| Q |
138 |
ccaacaatcaaggattttggtccaattatatacaaaatggtggtaatcctctttgt |
193 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35205531 |
c-aacaatcaaggattttggtccaattatatacaaaatggtggtaatcctctttgt |
35205477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 42 - 193
Target Start/End: Original strand, 35211519 - 35211674
Alignment:
| Q |
42 |
cactcatgcaacgactaaattttttaacatatatatttgattatttatcctattccatggtnnnnnnnnn-----ctacacatttcttttgaaaatgaac |
136 |
Q |
| |
|
||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
35211519 |
cactcatgcaacggctaatttttttaacatatatatttgattatttatcctattccatggtaaaaaaaaagaaaactacacatttcttttgaaaatgaac |
35211618 |
T |
|
| Q |
137 |
cccaacaatcaaggattttggtccaattatatacaaaatggtggtaatcctctttgt |
193 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35211619 |
cc-aacaatcaaggattttggtccaattatatacaaaatggtggtaatcctctttgt |
35211674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 312 - 372
Target Start/End: Complemental strand, 19698179 - 19698119
Alignment:
| Q |
312 |
ttggaaattacccatatcatacttcaccttaccaatatcaatctcaacaattttcatctca |
372 |
Q |
| |
|
|||||||||| ||||||||||| ||||||| | |||||| | |||||| ||||||||||| |
|
|
| T |
19698179 |
ttggaaattatccatatcatacaccaccttatccatatcactatcaacatttttcatctca |
19698119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0867 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0867
Description:
Target: scaffold0867; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 271 - 344
Target Start/End: Original strand, 308 - 381
Alignment:
| Q |
271 |
aaattctccttttattccaattccacaaaataatccaccctttggaaattacccatatcatacttcaccttacc |
344 |
Q |
| |
|
||||||| ||| ||| ||| |||||||||||||| || |||||||||||| |||| |||||| |||||||||| |
|
|
| T |
308 |
aaattctacttctatctcaaatccacaaaataatcaacactttggaaattatccatgtcatacatcaccttacc |
381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 42 - 83
Target Start/End: Original strand, 40278797 - 40278838
Alignment:
| Q |
42 |
cactcatgcaacgactaaattttttaacatatatatttgatt |
83 |
Q |
| |
|
||||||||||||| |||| ||||||||||||||||||||||| |
|
|
| T |
40278797 |
cactcatgcaacggctaatttttttaacatatatatttgatt |
40278838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 271 - 344
Target Start/End: Original strand, 22243670 - 22243743
Alignment:
| Q |
271 |
aaattctccttttattccaattccacaaaataatccaccctttggaaattacccatatcatacttcaccttacc |
344 |
Q |
| |
|
||||||| ||| ||| ||| |||||||||||||| || |||||||||||| |||| |||||| |||||||||| |
|
|
| T |
22243670 |
aaattctacttctatctcaaatccacaaaataatcaacactttggaaattatccatgtcatacatcaccttacc |
22243743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 293 - 344
Target Start/End: Original strand, 8321736 - 8321787
Alignment:
| Q |
293 |
ccacaaaataatccaccctttggaaattacccatatcatacttcaccttacc |
344 |
Q |
| |
|
||||||||||||| || ||||||||||||| ||||||||| |||||||||| |
|
|
| T |
8321736 |
ccacaaaataatcaacactttggaaattactcatatcataaatcaccttacc |
8321787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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